AlfalfaGEDB | MsaG045723

M. sativa ssp. caerulea / MsaG045723

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045723	AES91783.1	91.713	181	15	0	1	181	1	181	3.22e-113	329

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045723	tr\|G7JJ33\|G7JJ33_MEDTR	91.713	181	15	0	1	181	1	181	1.54e-113	329

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TFs/TRs:

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Gene ID	Type	Classification
MsaG045723	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG019435	MsaG045723	0.809534	3.081378e-50	5.203337e-48
MsaG042721	MsaG045723	0.808541	5.014948e-50	8.268084e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045723	MtrunA17_Chr4g0066461	45.946	111	41	3	77	181	1	98	3.68e-21	83.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 32 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACAGTAATCAAACC+AGG	0.647796	8:-76298169	None:intergenic
AAATCAAAGAAACCTGTTGA+AGG	0.526426	8:+76298040	MsaT045723.1:CDS
AACAAATCAGTTTCTGAAAT+GGG	0.410347	8:+76297665	MsaT045723.1:CDS
AATCAAAGAAACCTGTTGAA+GGG	0.548949	8:+76298041	MsaT045723.1:CDS
AATTGCTCTGTTACGGTTAC+TGG	0.180827	8:+76298103	MsaT045723.1:CDS
AGAAAAGAAGAAAATGTTGG+AGG	0.526690	8:+76298003	MsaT045723.1:CDS
ATCAAAGAAACCTGTTGAAG+GGG	0.470795	8:+76298042	MsaT045723.1:CDS
ATCACTGCTTTGGTTCAAAA+TGG	0.315294	8:+76298268	MsaT045723.1:CDS
ATTGAATCTGTGGCTAAACC+TGG	0.515198	8:+76298151	MsaT045723.1:CDS
CAAGCAATGTGGCTTTCTTT+GGG	0.307847	8:+76298128	MsaT045723.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	76297650	76298333	76297650	ID=MsaG045723
Chr8	mRNA	76297650	76298333	76297650	ID=MsaT045723.1;Parent=MsaG045723
Chr8	exon	76297650	76297811	76297650	ID=MsaT045723.1.exon1;Parent=MsaT045723.1
Chr8	CDS	76297650	76297811	76297650	ID=cds.MsaT045723.1;Parent=MsaT045723.1
Chr8	exon	76297950	76298333	76297950	ID=MsaT045723.1.exon2;Parent=MsaT045723.1
Chr8	CDS	76297950	76298333	76297950	ID=cds.MsaT045723.1;Parent=MsaT045723.1

Gene Sequence

>MsaT045723.1

ATGGAAGAGTACAGTAACAAATCAGTTTCTGAAATGGGTAACAGAAAACGTGGCACTGCTACTAAAACCGAAGAGGTTCTAAACGTTGAACGTGAAAGAAGGATGAAAATGAAGCAAATGTTCACTCACCTCACTACCACTGTCCCAACTCTCTACCCCAATGCTACACAGGAAGTGATTGTGAACGAAACAATCGAGTACATTAAGAAACTTGAAGAAAAGAAGAAAATGTTGGAGGAGATGAAGGAATCAAAATCAAAGAAACCTGTTGAAGGGGGTTTTAATTTGTTGGTTCCGTGTCGTAATAGGAATCTCAATTGCTCTGTTACGGTTACTGGTTCAAGCAATGTGGCTTTCTTTGGGATTGAATCTGTGGCTAAACCTGGTTTGATTACTGTGATTTTGAAGGTGTTTTTGAAGAATGAAGCTGAGGTTTTAGCTGCTAATGTTTCTGTTAATGATGGTAATTTGATCTTGGCGATCACTGCTTTGGTTCAAAATGGTGCTGCTATTGAGAAGATTAAGAGAGAGATTATGAGTTTGTAG

Protein sequence

>MsaT045723.1

MEEYSNKSVSEMGNRKRGTATKTEEVLNVERERRMKMKQMFTHLTTTVPTLYPNATQEVIVNETIEYIKKLEEKKKMLEEMKESKSKKPVEGGFNLLVPCRNRNLNCSVTVTGSSNVAFFGIESVAKPGLITVILKVFLKNEAEVLAANVSVNDGNLILAITALVQNGAAIEKIKREIMSL*