AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG045744


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045744 MtrunA17_Chr4g0066971 96.561 1163 40 0 1 1163 1 1163 0.0 2339
MsaG045744 MtrunA17_Chr1g0191931 43.651 1205 554 36 1 1163 1 1122 0.0 798
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045744 AT3G21430.2 47.049 1169 531 23 28 1163 19 1132 0.0 924
MsaG045744 AT3G21430.4 47.210 1165 531 23 28 1163 19 1128 0.0 922
MsaG045744 AT3G21430.3 47.210 1165 531 23 28 1163 19 1128 0.0 922
MsaG045744 AT3G05380.4 38.149 983 463 31 1 914 1 907 3.35e-156 494
MsaG045744 AT3G05380.4 41.573 178 93 4 988 1163 884 1052 1.24e-29 128
MsaG045744 AT3G05380.2 38.149 983 463 31 1 914 1 907 3.35e-156 494
MsaG045744 AT3G05380.2 41.573 178 93 4 988 1163 884 1052 1.24e-29 128
MsaG045744 AT3G05380.5 38.149 983 463 31 1 914 1 907 3.35e-156 494
MsaG045744 AT3G05380.5 41.573 178 93 4 988 1163 884 1052 1.24e-29 128
MsaG045744 AT3G05380.1 38.047 983 463 31 1 914 1 906 3.51e-156 494
MsaG045744 AT3G05380.1 41.573 178 93 4 988 1163 883 1051 1.24e-29 128
MsaG045744 AT3G05380.3 37.025 894 430 28 89 914 1 829 9.78e-130 421
MsaG045744 AT3G05380.3 41.573 178 93 4 988 1163 806 974 1.21e-29 128
MsaG045744 AT5G27610.1 40.878 433 212 11 386 784 288 710 3.68e-71 258
MsaG045744 AT5G27610.1 47.893 261 99 9 1 257 1 228 1.12e-53 204
MsaG045744 AT5G27610.1 34.831 178 104 3 988 1163 803 970 8.52e-23 106

Find 247 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTGTCAGGGTTTGTTTC+TGG 0.086747 8:-76554256 None:intergenic
CCGAGTTATCTCCGTATTTC+TGG 0.088103 8:-76560918 None:intergenic
TTTCACCATATTTAGGTTTC+TGG 0.112732 8:-76557554 None:intergenic
TGCAAAATCTGTGTCAAAAT+TGG 0.152697 8:-76552912 None:intergenic
TATGAAGCTTACCGTGAATA+TGG 0.199391 8:+76546814 MsaT045744.1:CDS
CTAGGGATTTCACCATATTT+AGG 0.204552 8:-76557561 None:intergenic
CACCTTGACAAAATGTTTAA+TGG 0.218918 8:-76562313 None:intergenic
TTGCCAATAGAATATGAAAT+AGG 0.224344 8:-76552327 None:intergenic
ACACGCTGCCCAACAATTAA+TGG 0.227330 8:-76558914 None:intergenic
GGTAGATTCTTTGAACAAAA+TGG 0.238242 8:-76563717 None:intergenic
TCATGAATCTCCCTTGTCTT+TGG 0.253815 8:-76558950 None:intergenic
CAAGCATTTGAATGACTTAA+AGG 0.264328 8:+76552841 MsaT045744.1:CDS
TGGTACACAGCGACCTTTAA+TGG 0.271033 8:-76559879 None:intergenic
AAACCTTGATGAGTCTAAAA+TGG 0.290911 8:+76555802 MsaT045744.1:CDS
CTGGTATGCTCCCTCTGCTT+TGG 0.301751 8:-76555891 None:intergenic
GGCCTCATGCTGTTCGAAAA+AGG 0.303491 8:+76552292 MsaT045744.1:CDS
TTCTGTATCTCACCATATAT+TGG 0.303861 8:-76563738 None:intergenic
GGCCATAGATTCTATTACTT+TGG 0.309553 8:+76562261 MsaT045744.1:CDS
GTCCCTATTTCATATTCTAT+TGG 0.311459 8:+76552324 MsaT045744.1:CDS
TCTACTGCTTTGTTGTCATT+TGG 0.311783 8:-76549990 None:intergenic
AGCTACACTGCTCATGATTC+AGG 0.314415 8:+76562417 MsaT045744.1:CDS
GGTGATAATGCAGATTATTC+TGG 0.316155 8:+76552713 MsaT045744.1:CDS
AGCCAAAGTAATAGAATCTA+TGG 0.320570 8:-76562263 None:intergenic
GACAGACCATTATAGTATTA+TGG 0.321669 8:+76548973 MsaT045744.1:CDS
TGGTATGCTCCCTCTGCTTT+GGG 0.323032 8:-76555890 None:intergenic
CAGTTTGACCAGCATGAACT+TGG 0.326153 8:+76559013 MsaT045744.1:CDS
GAAGCCCATTGCAAATTTAG+AGG 0.326174 8:+76561195 MsaT045744.1:CDS
GTGACATCATACCAGGAATT+AGG 0.327363 8:+76552271 MsaT045744.1:intron
ATCAAAAGAAGCTGATATAT+TGG 0.334194 8:+76560679 MsaT045744.1:CDS
ACCTTGACAAAATGTTTAAT+GGG 0.335302 8:-76562312 None:intergenic
GGAAGGCATACCTGCTGATT+TGG 0.335570 8:+76558886 MsaT045744.1:CDS
TCTTGTTGTATCATTGGTTT+TGG 0.337366 8:-76557712 None:intergenic
CGGAAACAGTTCAAGAAAAT+CGG 0.338674 8:+76555835 MsaT045744.1:CDS
GAGGGCACTGCTTCTGTGGT+TGG 0.350015 8:+76548935 MsaT045744.1:CDS
TTGCTCTTGCAGTACGTAAT+AGG 0.355212 8:+76547090 MsaT045744.1:CDS
CATTGTGCATAAGCTCTCTA+AGG 0.355553 8:-76559793 None:intergenic
GGTAGTTCTGAGTTGAGTTT+AGG 0.359133 8:+76552680 MsaT045744.1:CDS
AGCTTGAACAACCATGGTTC+GGG 0.363741 8:-76561323 None:intergenic
CCACTCAATACGAGTCAATC+TGG 0.366185 8:-76558049 None:intergenic
TCATTCCAGAAACCTAAATA+TGG 0.366857 8:+76557549 MsaT045744.1:CDS
GAGAAGTCAGATGCCATTAA+AGG 0.366873 8:+76559866 MsaT045744.1:CDS
GACTTTGAGATATAGATTCT+TGG 0.367314 8:-76561264 None:intergenic
TCAAAGAATCTACCAATATA+TGG 0.367899 8:+76563726 MsaT045744.1:CDS
TTCTTACCATAATACTATAA+TGG 0.367930 8:-76548979 None:intergenic
TGCTATGCAGAAGAGAAAAT+TGG 0.368184 8:+76546744 MsaT045744.1:intron
AGTTGTATCAACCATTTGTT+TGG 0.371204 8:-76552391 None:intergenic
TCATTCTAGCAGGAGTAATA+TGG 0.372331 8:-76559763 None:intergenic
AGGGCACTGCTTCTGTGGTT+GGG 0.372492 8:+76548936 MsaT045744.1:CDS
GTGAAGAAGTCCACGGTTAA+AGG 0.375088 8:+76557502 MsaT045744.1:CDS
TTGTTGAAGAAAAGGCATTC+TGG 0.378476 8:+76550074 MsaT045744.1:CDS
AGAAAATTGGCCGATATGTT+AGG 0.389878 8:+76546757 MsaT045744.1:CDS
TGCCAATAGAATATGAAATA+GGG 0.392930 8:-76552326 None:intergenic
GTATGATCTTGTTGTATCAT+TGG 0.395885 8:-76557718 None:intergenic
AGCCTTCTGCCTATTCTTGC+CGG 0.398604 8:-76546435 None:intergenic
TATCATAAGAAATCAGATAT+TGG 0.401370 8:+76563770 MsaT045744.1:CDS
TCCAATCTTTCCCATATTCA+CGG 0.405262 8:-76546825 None:intergenic
TGTGTCAAAATTGGATTTGA+AGG 0.405494 8:-76552903 None:intergenic
CATTATGCTGAAGTTCTTGC+TGG 0.413232 8:+76558857 MsaT045744.1:CDS
AATACCTGTGCAACATCAGC+TGG 0.413425 8:-76563669 None:intergenic
GCCTGTCATTGTTGAAGAAA+AGG 0.415958 8:+76550066 MsaT045744.1:CDS
CATGTTAAATCAGGAATAGT+TGG 0.422787 8:+76552626 MsaT045744.1:CDS
CTCTGTTTATTTGACCGACT+TGG 0.423203 8:-76557663 None:intergenic
GAGATAATATTGGAAGAGTA+AGG 0.427648 8:+76552759 MsaT045744.1:CDS
AATGACAACAAAGCAGTAGA+TGG 0.428914 8:+76549993 MsaT045744.1:CDS
CAGCAAATACCGGCAAGAAT+AGG 0.429426 8:+76546426 MsaT045744.1:CDS
CTACTCTTATGCAGTTCTCT+TGG 0.430013 8:+76558755 MsaT045744.1:intron
AAGCCTTGTACACTAAGAAC+AGG 0.430030 8:+76547129 MsaT045744.1:CDS
CGGAACAGTAGAGATAATAT+TGG 0.430192 8:+76552749 MsaT045744.1:CDS
ATAAATGCCTTACCAGTGTC+AGG 0.432931 8:-76554268 None:intergenic
TGGCCCAGCCATTAATTGTT+GGG 0.439743 8:+76558906 MsaT045744.1:CDS
CTTCTAGGAACTTGTGTTGT+CGG 0.445079 8:+76560861 MsaT045744.1:intron
TAGCTTGAACAACCATGGTT+CGG 0.445922 8:-76561324 None:intergenic
ATAAATCCATCGCATCATAC+TGG 0.446266 8:+76557773 MsaT045744.1:CDS
AATCTAGAAGTGTAAATAAG+AGG 0.448249 8:+76546360 MsaT045744.1:CDS
AAATCACAAGCAAAAGTTGC+GGG 0.448716 8:+76560593 MsaT045744.1:CDS
TTTAGAGGATCCCGGTGGTC+AGG 0.449914 8:+76561210 MsaT045744.1:CDS
CATACTGGTTCTCATTTAAG+TGG 0.450622 8:+76556095 MsaT045744.1:CDS
TTGGCCCAGCCATTAATTGT+TGG 0.451045 8:+76558905 MsaT045744.1:CDS
TATTTGAAGACATATTTCCT+AGG 0.454212 8:-76557579 None:intergenic
GCCTCCAGTGGAACCGATGA+TGG 0.455246 8:+76552866 MsaT045744.1:CDS
AACATAAACTTAATCAGTAC+CGG 0.455370 8:+76558819 MsaT045744.1:CDS
TGAACAAAATGGCTGCAAAC+TGG 0.455570 8:-76563706 None:intergenic
GAATAGTACGGAACGTCATA+AGG 0.457036 8:+76557798 MsaT045744.1:CDS
TACCCTGTTCTTAGTGTACA+AGG 0.457694 8:-76547132 None:intergenic
ATTAACTGAAGCAAATGAAC+AGG 0.462633 8:+76560990 MsaT045744.1:CDS
GAACTGAAGCACATGAATGA+TGG 0.462918 8:+76560883 MsaT045744.1:CDS
AAGAGTAAGGAATCAGGAAA+AGG 0.465011 8:+76552772 MsaT045744.1:CDS
TATTGGAAGAGTAAGGAATC+AGG 0.465078 8:+76552766 MsaT045744.1:CDS
TTAGAGAGCTTATGCACAAT+GGG 0.466746 8:+76559795 MsaT045744.1:CDS
AATGTGATCTGACAGATTCC+CGG 0.468252 8:-76558838 None:intergenic
AAGTGTGAGGTCTTCTTACA+AGG 0.469533 8:+76552943 MsaT045744.1:CDS
CTGTTGACCATTGTAGATAC+CGG 0.470249 8:+76558987 MsaT045744.1:CDS
TATCGTTGACAAAGCAGAAA+GGG 0.470257 8:+76557600 MsaT045744.1:CDS
ATGAAGCTTACCGTGAATAT+GGG 0.470402 8:+76546815 MsaT045744.1:CDS
ACCGTGAATATGGGAAAGAT+TGG 0.471794 8:+76546824 MsaT045744.1:CDS
ATCTATGGCCAGAAAATTTG+TGG 0.473141 8:-76562248 None:intergenic
AGAGTAAGGAATCAGGAAAA+GGG 0.476289 8:+76552773 MsaT045744.1:CDS
CATTCCGTTGCATCAGATGA+TGG 0.476385 8:+76550041 MsaT045744.1:CDS
AATTGGATTTGAAGGAACTC+TGG 0.478314 8:-76552895 None:intergenic
TCCAGAGGGCACTGCTTCTG+TGG 0.478808 8:+76548931 MsaT045744.1:CDS
ACCACAGAAGCAGTGCCCTC+TGG 0.479339 8:-76548932 None:intergenic
ACGTAATAGGACCATGGAAA+TGG 0.480725 8:+76547103 MsaT045744.1:CDS
CCATTGTGGTCCTAACATAT+CGG 0.481285 8:-76546767 None:intergenic
GTTGTGGCAAGCTGAGCAAT+TGG 0.482009 8:-76561242 None:intergenic
TTTCCATCTTTCTTCTAGGT+CGG 0.482426 8:-76557687 None:intergenic
TTGAGTGGGGAGTCATTAGA+AGG 0.484128 8:+76558064 MsaT045744.1:CDS
ATTCTGGAAAATTAATTCAT+CGG 0.486527 8:+76552729 MsaT045744.1:CDS
CAATGAGATATGAGTTCTGA+GGG 0.491306 8:-76562391 None:intergenic
TTCTATTGGCAAAGATAATG+AGG 0.491767 8:+76552338 MsaT045744.1:CDS
TCCTGCTTACAGCACTAAGC+TGG 0.492772 8:-76555910 None:intergenic
AGGTTCTCATTCATTCTAGC+AGG 0.493474 8:-76559773 None:intergenic
CGCAAATCTGACATGGATGA+AGG 0.495520 8:+76552659 MsaT045744.1:CDS
ATCAGCAGGTATGCCTTCCT+TGG 0.495822 8:-76558882 None:intergenic
GGATCCTCTAAATTTGCAAT+GGG 0.496083 8:-76561199 None:intergenic
CCATCACCCAATCTGAAAAG+TGG 0.497047 8:+76552507 MsaT045744.1:CDS
ATGGCATCTGACTTCTCACT+TGG 0.499265 8:-76559860 None:intergenic
AATTGCTCTGAAAATCTTCG+TGG 0.500777 8:-76558782 None:intergenic
AGTTTGACCAGCATGAACTT+GGG 0.504601 8:+76559014 MsaT045744.1:CDS
AACTGAAGCACATGAATGAT+GGG 0.505603 8:+76560884 MsaT045744.1:CDS
GACTCGTGCTCTAGAAAAGA+AGG 0.506028 8:+76560715 MsaT045744.1:CDS
GTTAGGACCACAATGGAGTA+AGG 0.506745 8:+76546774 MsaT045744.1:CDS
CTAAATATGGTGAAATCCCT+AGG 0.507305 8:+76557562 MsaT045744.1:CDS
GATAAAGATGCAGCAAATAC+CGG 0.508252 8:+76546416 MsaT045744.1:CDS
GCTGCCCAACAATTAATGGC+TGG 0.508774 8:-76558910 None:intergenic
AAGTGGTTCCCAGAAAATCA+AGG 0.509560 8:+76556112 MsaT045744.1:CDS
AATGGCTGGGCCAAATCAGC+AGG 0.510693 8:-76558896 None:intergenic
GGAAACAGTTCAAGAAAATC+GGG 0.510715 8:+76555836 MsaT045744.1:CDS
GAGATATAGATTCTTGGTTG+TGG 0.512907 8:-76561258 None:intergenic
GCGGGCAGTGAGATTTGTAA+TGG 0.514341 8:+76560611 MsaT045744.1:CDS
TTAAGTTCATCATCTTGTAC+AGG 0.517590 8:-76562337 None:intergenic
AATGAGAACTTGATGCTGAT+TGG 0.518355 8:-76560634 None:intergenic
TTTCAGAAAGACAGAAAGCA+AGG 0.519639 8:+76562156 MsaT045744.1:CDS
CTGCCCAACAATTAATGGCT+GGG 0.521000 8:-76558909 None:intergenic
TCCATCATCGGTTCCACTGG+AGG 0.521031 8:-76552867 None:intergenic
TCTAAAATGGAAACAGATAA+CGG 0.522858 8:+76555815 MsaT045744.1:CDS
ACCAGCTTAGTGCTGTAAGC+AGG 0.523976 8:+76555909 MsaT045744.1:CDS
CAATCTGAAAAGTGGGAAGA+AGG 0.524576 8:+76552515 MsaT045744.1:CDS
CAGAATGATGAAACACATAC+TGG 0.524927 8:+76556080 MsaT045744.1:intron
GGCGATGGTGCACCTCTGAA+TGG 0.528930 8:+76557944 MsaT045744.1:CDS
ATACTTAGAACATGTTGGAC+TGG 0.530255 8:+76558017 MsaT045744.1:CDS
AGGCCGACCTAGAAGAAAGA+TGG 0.530402 8:+76557684 MsaT045744.1:CDS
TGGGGACAATATTGTGTGCT+CGG 0.531755 8:-76559840 None:intergenic
TGATTGGAGTCGCTCAAGAA+AGG 0.533822 8:-76560660 None:intergenic
GTACTGCTTACATGCATAGC+AGG 0.536620 8:-76559902 None:intergenic
CAGATTGACTCGTATTGAGT+GGG 0.537564 8:+76558050 MsaT045744.1:CDS
ATAGTGCTATTGATTATCCA+TGG 0.540206 8:+76557971 MsaT045744.1:CDS
ATTTGAAGACATATTTCCTA+GGG 0.540728 8:-76557578 None:intergenic
TTGAGTTTAGGAAGTACAGA+AGG 0.542444 8:+76552692 MsaT045744.1:CDS
GTTTGACCAGCATGAACTTG+GGG 0.546671 8:+76559015 MsaT045744.1:CDS
CTTCACATCAAACGCGGCGA+TGG 0.547360 8:+76557929 MsaT045744.1:CDS
CACTCAATACGAGTCAATCT+GGG 0.548436 8:-76558048 None:intergenic
CATGGTTGTTCAAGCTACTC+AGG 0.549504 8:+76561330 MsaT045744.1:CDS
GTATCAGAAAGCCAGAAATA+CGG 0.550244 8:+76560907 MsaT045744.1:CDS
TAGGCAGGACTCCAAACAAA+TGG 0.551437 8:+76552380 MsaT045744.1:CDS
AGAATATGAAATAGGGACAC+GGG 0.551820 8:-76552319 None:intergenic
GTTCTTGCTGGTACCAAGGA+AGG 0.552113 8:+76558869 MsaT045744.1:CDS
ATACCTGTGCAACATCAGCT+GGG 0.552409 8:-76563668 None:intergenic
CAAGGCTTCTACCATTTCCA+TGG 0.555139 8:-76547114 None:intergenic
GGGATCCTCTAAATTTGCAA+TGG 0.556861 8:-76561200 None:intergenic
AAACAAAATGCAGAAGTGTA+CGG 0.559214 8:+76563632 MsaT045744.1:intron
CCAGAAATACGGAGATAACT+CGG 0.563831 8:+76560918 MsaT045744.1:CDS
GGAAGAGCTAGCCTGACCAC+CGG 0.565756 8:-76561221 None:intergenic
AACTCTCTCTTTGAAAACCA+TGG 0.566023 8:-76557988 None:intergenic
GTAGAATACTTAGAACATGT+TGG 0.571317 8:+76558012 MsaT045744.1:CDS
CTTAGAGAGCTTATGCACAA+TGG 0.573435 8:+76559794 MsaT045744.1:CDS
TGGTGAGATACAGAAATGCA+TGG 0.576778 8:+76563746 MsaT045744.1:CDS
GACTTAAAGGAGGCCTCCAG+TGG 0.577399 8:+76552854 MsaT045744.1:CDS
TGAAGGAGTCTGAGCTAGGT+AGG 0.577749 8:-76563801 None:intergenic
TGACCGCTTGCCTTTAACCG+TGG 0.577890 8:-76557512 None:intergenic
TCATTTGTGCAGTTCAGTGA+AGG 0.577897 8:+76555779 MsaT045744.1:CDS
AAATTCACCTTCTGAATACC+AGG 0.578589 8:-76546461 None:intergenic
CATCACCCAATCTGAAAAGT+GGG 0.578815 8:+76552508 MsaT045744.1:CDS
ATTGCAAATTTAGAGGATCC+CGG 0.580743 8:+76561202 MsaT045744.1:CDS
TAGAGTCATCGACTGAAAGC+CGG 0.581077 8:-76562216 None:intergenic
CATGCTGGTCAAACTGAACC+CGG 0.582887 8:-76559006 None:intergenic
TGGCATCTGACTTCTCACTT+GGG 0.583323 8:-76559859 None:intergenic
CCAGATTGACTCGTATTGAG+TGG 0.583650 8:+76558049 MsaT045744.1:CDS
AAGACAAGGGAGATTCATGA+TGG 0.583960 8:+76558953 MsaT045744.1:CDS
TGAAGTTCTTGCTGGTACCA+AGG 0.587865 8:+76558865 MsaT045744.1:CDS
ACAATGAGATATGAGTTCTG+AGG 0.588292 8:-76562392 None:intergenic
TACTTAGAACATGTTGGACT+GGG 0.589292 8:+76558018 MsaT045744.1:CDS
TTGTCATTTGGCTTTCCCCG+TGG 0.590049 8:-76549978 None:intergenic
GGCATACTTGTCTCTTCCAG+AGG 0.594396 8:+76548916 MsaT045744.1:intron
GAAGAGCTAGCCTGACCACC+GGG 0.595145 8:-76561220 None:intergenic
AATAGGCAGAAGGCTAGTCC+TGG 0.595746 8:+76546443 MsaT045744.1:CDS
ATATCGTTGACAAAGCAGAA+AGG 0.598224 8:+76557599 MsaT045744.1:CDS
ATTCCTCCAGTATGATGCGA+TGG 0.600268 8:-76557779 None:intergenic
ATGGTGTCTTATCAGAGACA+TGG 0.600547 8:-76559744 None:intergenic
TGTTGACCATTGTAGATACC+GGG 0.601453 8:+76558988 MsaT045744.1:CDS
GGCTAGTCCTGGTATTCAGA+AGG 0.601808 8:+76546454 MsaT045744.1:CDS
AAGCAAGGTTGAAAGAGTTG+AGG 0.603856 8:+76562171 MsaT045744.1:CDS
TCATCTGATGCAACGGAATG+TGG 0.605010 8:-76550038 None:intergenic
GCAACCATCATCTGATGCAA+CGG 0.606972 8:-76550045 None:intergenic
ATCATACTGGAGGAATAGTA+CGG 0.608135 8:+76557786 MsaT045744.1:CDS
TTGCTATTCATCCAAAGACA+AGG 0.608201 8:+76558939 MsaT045744.1:CDS
TGCTATTCATCCAAAGACAA+GGG 0.608809 8:+76558940 MsaT045744.1:CDS
CAGTTCAAGAAAATCGGGCA+AGG 0.610014 8:+76555841 MsaT045744.1:CDS
ATTCAACCCCAAGTTCATGC+TGG 0.612807 8:-76559021 None:intergenic
CCAGAAACAAACCCTGACAC+TGG 0.613482 8:+76554256 MsaT045744.1:CDS
TACCTGTGCAACATCAGCTG+GGG 0.616593 8:-76563667 None:intergenic
AATTGCATTAGCATTATCAG+AGG 0.618027 8:+76552428 MsaT045744.1:CDS
TAGAATATGAAATAGGGACA+CGG 0.618389 8:-76552320 None:intergenic
GGCATCTGACTTCTCACTTG+GGG 0.618633 8:-76559858 None:intergenic
CAAATCACAAGCAAAAGTTG+CGG 0.619381 8:+76560592 MsaT045744.1:CDS
TCTATTGGCAAAGATAATGA+GGG 0.622126 8:+76552339 MsaT045744.1:CDS
TGGTGTCTTATCAGAGACAT+GGG 0.624605 8:-76559743 None:intergenic
TACCGGCAAGAATAGGCAGA+AGG 0.627607 8:+76546433 MsaT045744.1:CDS
GGTGAGATACAGAAATGCAT+GGG 0.628850 8:+76563747 MsaT045744.1:CDS
ACTTGGGGTTGAATTTGTCA+TGG 0.632591 8:+76559030 MsaT045744.1:CDS
TAAATGCCTTACCAGTGTCA+GGG 0.634335 8:-76554267 None:intergenic
ATATGGGAAAGATTGGAAGA+AGG 0.634909 8:+76546831 MsaT045744.1:CDS
AGATACTGCTCCCAAAGCAG+AGG 0.637946 8:+76555880 MsaT045744.1:CDS
TGGCTGCAAACTGGTGACAG+CGG 0.639746 8:-76563697 None:intergenic
GATACTGCTCCCAAAGCAGA+GGG 0.640638 8:+76555881 MsaT045744.1:CDS
TACATCGTAGGTTACTGATG+AGG 0.643727 8:+76557480 MsaT045744.1:intron
ATCGTTGACAAAGCAGAAAG+GGG 0.645016 8:+76557601 MsaT045744.1:CDS
TCAGAGGCTTCACAGAGAGG+TGG 0.645463 8:+76552444 MsaT045744.1:CDS
CTGAGTAGCTTGAACAACCA+TGG 0.645469 8:-76561329 None:intergenic
TAGAAGAAAAGCCCGAACCA+TGG 0.646018 8:+76561312 MsaT045744.1:CDS
AATCCATCGCATCATACTGG+AGG 0.648435 8:+76557776 MsaT045744.1:CDS
ACATAAACTTAATCAGTACC+GGG 0.650723 8:+76558820 MsaT045744.1:CDS
ACTGAACCCGGTATCTACAA+TGG 0.651577 8:-76558994 None:intergenic
ACCTGTGCAACATCAGCTGG+GGG 0.653849 8:-76563666 None:intergenic
TGCAGTACGTAATAGGACCA+TGG 0.653882 8:+76547097 MsaT045744.1:CDS
AGTGTGAGGTCTTCTTACAA+GGG 0.653978 8:+76552944 MsaT045744.1:CDS
TGGCAGGGAGGAAGTGACAG+TGG 0.654632 8:+76549906 MsaT045744.1:intron
GCATTTGAATGACTTAAAGG+AGG 0.659228 8:+76552844 MsaT045744.1:CDS
GAAGTTTCGCAAATCTGACA+TGG 0.660309 8:+76552652 MsaT045744.1:CDS
GAGGTTCTCTAATATTCGTG+AGG 0.661488 8:+76546379 MsaT045744.1:CDS
AGTCCACGGTTAAAGGCAAG+CGG 0.668120 8:+76557509 MsaT045744.1:CDS
GCATACTTGTCTCTTCCAGA+GGG 0.673500 8:+76548917 MsaT045744.1:CDS
AGCACTATAAAACCATTCAG+AGG 0.676314 8:-76557956 None:intergenic
TTATCAGAGGCTTCACAGAG+AGG 0.676499 8:+76552441 MsaT045744.1:CDS
AGCCTTGTACACTAAGAACA+GGG 0.682265 8:+76547130 MsaT045744.1:CDS
CCGATATGTTAGGACCACAA+TGG 0.682677 8:+76546767 MsaT045744.1:CDS
AGCTCCGCCTTACTCCATTG+TGG 0.688593 8:-76546781 None:intergenic
CTGCTTACATGCATAGCAGG+TGG 0.693143 8:-76559899 None:intergenic
TGATGAGGTGAAGAAGTCCA+CGG 0.695386 8:+76557495 MsaT045744.1:CDS
GTCTGTCTTCACATCAAACG+CGG 0.697708 8:+76557923 MsaT045744.1:CDS
AGATTGACTCGTATTGAGTG+GGG 0.698291 8:+76558051 MsaT045744.1:CDS
AGGACCACAATGGAGTAAGG+CGG 0.703268 8:+76546777 MsaT045744.1:CDS
ACTGAAGCACATGAATGATG+GGG 0.703661 8:+76560885 MsaT045744.1:CDS
GGGCTTCAATGACAAAACTG+AGG 0.705815 8:-76561179 None:intergenic
GAATATGAAATAGGGACACG+GGG 0.712256 8:-76552318 None:intergenic
CAAGTCGGTCAAATAAACAG+AGG 0.727061 8:+76557664 MsaT045744.1:CDS
AATGAGATATGAGTTCTGAG+GGG 0.770793 8:-76562390 None:intergenic
GCAAATTTAGAGGATCCCGG+TGG 0.773825 8:+76561205 MsaT045744.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 76546344 76563809 76546344 ID=MsaG045744
Chr8 mRNA 76546344 76563809 76546344 ID=MsaT045744.1;Parent=MsaG045744
Chr8 exon 76546344 76546475 76546344 ID=MsaT045744.1.exon1;Parent=MsaT045744.1
Chr8 CDS 76546344 76546475 76546344 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76546754 76546852 76546754 ID=MsaT045744.1.exon2;Parent=MsaT045744.1
Chr8 CDS 76546754 76546852 76546754 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76547089 76547151 76547089 ID=MsaT045744.1.exon3;Parent=MsaT045744.1
Chr8 CDS 76547089 76547151 76547089 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76548917 76548994 76548917 ID=MsaT045744.1.exon4;Parent=MsaT045744.1
Chr8 CDS 76548917 76548994 76548917 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76549912 76550095 76549912 ID=MsaT045744.1.exon5;Parent=MsaT045744.1
Chr8 CDS 76549912 76550095 76549912 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76552286 76552536 76552286 ID=MsaT045744.1.exon6;Parent=MsaT045744.1
Chr8 CDS 76552286 76552536 76552286 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76552626 76553004 76552626 ID=MsaT045744.1.exon7;Parent=MsaT045744.1
Chr8 CDS 76552626 76553004 76552626 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76554200 76554277 76554200 ID=MsaT045744.1.exon8;Parent=MsaT045744.1
Chr8 CDS 76554200 76554277 76554200 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76555777 76555961 76555777 ID=MsaT045744.1.exon9;Parent=MsaT045744.1
Chr8 CDS 76555777 76555961 76555777 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76556083 76556133 76556083 ID=MsaT045744.1.exon10;Parent=MsaT045744.1
Chr8 CDS 76556083 76556133 76556083 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76557490 76557819 76557490 ID=MsaT045744.1.exon11;Parent=MsaT045744.1
Chr8 CDS 76557490 76557819 76557490 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76557907 76558085 76557907 ID=MsaT045744.1.exon12;Parent=MsaT045744.1
Chr8 CDS 76557907 76558085 76557907 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76558769 76559051 76558769 ID=MsaT045744.1.exon13;Parent=MsaT045744.1
Chr8 CDS 76558769 76559051 76558769 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76559704 76559913 76559704 ID=MsaT045744.1.exon14;Parent=MsaT045744.1
Chr8 CDS 76559704 76559913 76559704 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76560575 76560736 76560575 ID=MsaT045744.1.exon15;Parent=MsaT045744.1
Chr8 CDS 76560575 76560736 76560575 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76560868 76561011 76560868 ID=MsaT045744.1.exon16;Parent=MsaT045744.1
Chr8 CDS 76560868 76561011 76560868 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76561127 76561351 76561127 ID=MsaT045744.1.exon17;Parent=MsaT045744.1
Chr8 CDS 76561127 76561351 76561127 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76562145 76562438 76562145 ID=MsaT045744.1.exon18;Parent=MsaT045744.1
Chr8 CDS 76562145 76562438 76562145 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Chr8 exon 76563645 76563809 76563645 ID=MsaT045744.1.exon19;Parent=MsaT045744.1
Chr8 CDS 76563645 76563809 76563645 ID=cds.MsaT045744.1;Parent=MsaT045744.1
Gene Sequence

>MsaT045744.1

ATGGGCCCTACCAGAAAATCTAGAAGTGTAAATAAGAGGTTCTCTAATATTCGTGAGGCTGCAGCTAGTAAAGATAAAGATGCAGCAAATACCGGCAAGAATAGGCAGAAGGCTAGTCCTGGTATTCAGAAGAAGAGAAAATTGGCCGATATGTTAGGACCACAATGGAGTAAGGCGGAGCTTGAGCGTTTCTATGAAGCTTACCGTGAATATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATAGGACCATGGAAATGGTAGAAGCCTTGTACACTAAGAACAGGGCATACTTGTCTCTTCCAGAGGGCACTGCTTCTGTGGTTGGGCTGATAGCAATGATGACAGACCATTATAGTATTATGGGAGGAAGTGACAGTGGAAAAGAAAGCAATGAAGATTCAGAAATAATGAAAAAGTCTAAAAAACGTCCACGGGGAAAGCCAAATGACAACAAAGCAGTAGATGGACAATTTTCTGATCATTCTCAGCCACATTCCGTTGCATCAGATGATGGTTGCCTGTCATTGTTGAAGAAAAGGCATTCTGGAATTAGGCCTCATGCTGTTCGAAAAAGGACTCCCCGTGTCCCTATTTCATATTCTATTGGCAAAGATAATGAGGGAAAGTTTTTTTCATCTGCTAGGCAGGACTCCAAACAAATGGTTGATACAACTGATGTCACTCATAAAATTGCATTAGCATTATCAGAGGCTTCACAGAGAGGTGGTTCTTCAAAAAAAGTTGGATCGCCAAACAAGAAAAACATGCCATCACCCAATCTGAAAAGTGGGAAGAAGCATGTTAAATCAGGAATAGTTGGAGCGAAGTTTCGCAAATCTGACATGGATGAAGGTAGTTCTGAGTTGAGTTTAGGAAGTACAGAAGGTGATAATGCAGATTATTCTGGAAAATTAATTCATCGGAACAGTAGAGATAATATTGGAAGAGTAAGGAATCAGGAAAAGGGAATAAAACACTACAGAAAGAGTTTAGAACCCCAGAAAAATACAAACAAGCATTTGAATGACTTAAAGGAGGCCTCCAGTGGAACCGATGATGGAAAAAACCAGAGTTCCTTCAAATCCAATTTTGACACAGATTTTGCAAATGCAAAAAGTGTGAGGTCTTCTTACAAGGGTCCCAGAAAGAAAAGTAAAAAACTACATTTTGAGGAAGATGAAGGTTCTGCTTTTGATGCTCTGAAAACTTTGGCTGATCTATCTTTGATGATGCCAGAAACAAACCCTGACACTGAATCATTTGTGCAGTTCAGTGAAGGAAACCTTGATGAGTCTAAAATGGAAACAGATAACGGAAACAGTTCAAGAAAATCGGGCAAGGTTTTTTCTGATAAAGGAGATACTGCTCCCAAAGCAGAGGGAGCATACCAGCTTAGTGCTGTAAGCAGGAAAAGAAAACAAAAATCTTTTACTTTAAATAATGATGAAACACATACTGGTTCTCATTTAAGTGGTTCCCAGAAAATCAAGGTTACTGATGAGGTGAAGAAGTCCACGGTTAAAGGCAAGCGGTCATCTGTTAGTACTGCTCATTCCAGAAACCTAAATATGGTGAAATCCCTAGGAAATATGTCTTCAAATATCGTTGACAAAGCAGAAAGGGGTGATTCATCATTTTCTCCCATAAAAGTTTTGTCTACTAACCAAGTCGGTCAAATAAACAGAGGCCGACCTAGAAGAAAGATGGAAAAACCAAAACCAATGATACAACAAGATCATACAATGTCTGAAAATAATTTTAGTGGTCAACATGATAAATCCATCGCATCATACTGGAGGAATAGTACGGAACGTCATAAGGGAATGCTTATTAATTGTCTGTCTTCACATCAAACGCGGCGATGGTGCACCTCTGAATGGTTTTATAGTGCTATTGATTATCCATGGTTTTCAAAGAGAGAGTTTGTAGAATACTTAGAACATGTTGGACTGGGTCATGTTCCCAGATTGACTCGTATTGAGTGGGGAGTCATTAGAAGTTCTCTTGGTAGACCACGAAGATTTTCAGAGCAATTTTTGACAGAAGAAAAACATAAACTTAATCAGTACCGGGAATCTGTCAGATCACATTATGCTGAAGTTCTTGCTGGTACCAAGGAAGGCATACCTGCTGATTTGGCCCAGCCATTAATTGTTGGGCAGCGTGTTATTGCTATTCATCCAAAGACAAGGGAGATTCATGATGGAAGTATACTGACTGTTGACCATTGTAGATACCGGGTTCAGTTTGACCAGCATGAACTTGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTTTGTATCCATCTGAAAATATGCCCATGTCTCTGATAAGACACCATATTACTCCTGCTAGAATGAATGAGAACCTTAGAGAGCTTATGCACAATGGGAAACTAACACAAAGAAAGATCTCCGAGCACACAATATTGTCCCCAAGTGAGAAGTCAGATGCCATTAAAGGTCGCTGTGTACCACCTGCTATGCATGGGTTTTCTTCAAGCTGCAAATCACAAGCAAAAGTTGCGGGCAGTGAGATTTGTAATGGCCAATCAGCATCAAGTTCTCATTCTTCCTTTCTTGAGCGACTCCAATCAAAAGAAGCTGATATATTGGCTATTTCAGAATTGACTCGTGCTCTAGAAAAGAAGGAACTTGTGTTGTCGGAACTGAAGCACATGAATGATGGGGTATCAGAAAGCCAGAAATACGGAGATAACTCGGTGAAAGATTCAGAACCTTTTAAAAGGAATTATGCTTCAGTACTAATGCAATTAACTGAAGCAAATGAACAGGTTTCTTCTAGCTTATTTTGCTTGAGGCAACGCAATGCATATCAAGCAAGCTCCTCAGTTTTGTCATTGAAGCCCATTGCAAATTTAGAGGATCCCGGTGGTCAGGCTAGCTCTTCCAATTGCTCAGCTTGCCACAACCAAGAATCTATATCTCAAAGTCACATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGAACCATGGTTGTTCAAGCTACTCAGGCAATGTTAGTTTTCAGAAAGACAGAAAGCAAGGTTGAAAGAGTTGAGGATGCAATAAATTTTATCAATAACCGGCTTTCAGTCGATGACTCTACTGCTTCAGCCACAAATTTTCTGGCCATAGATTCTATTACTTTGGCTTCTCGTGATCAATTGACTGCTAGCAGCCCATTAAACATTTTGTCAAGGTGTCCTGTACAAGATGATGAACTTAACAGTTCGTCTGACCAAAATGAAATGAAAATCCCCTCAGAACTCATATCTCATTGTCTAGCTACACTGCTCATGATTCAGAAGTGTACGGAAAGACAATTTCCCCCAGCTGATGTTGCACAGGTATTAGATTCCGCTGTCACCAGTTTGCAGCCATTTTGTTCAAAGAATCTACCAATATATGGTGAGATACAGAAATGCATGGGTATCATAAGAAATCAGATATTGGCACTCGTACCTACCTAG

Protein sequence

>MsaT045744.1

MGPTRKSRSVNKRFSNIREAAASKDKDAANTGKNRQKASPGIQKKRKLADMLGPQWSKAELERFYEAYREYGKDWKKVALAVRNRTMEMVEALYTKNRAYLSLPEGTASVVGLIAMMTDHYSIMGGSDSGKESNEDSEIMKKSKKRPRGKPNDNKAVDGQFSDHSQPHSVASDDGCLSLLKKRHSGIRPHAVRKRTPRVPISYSIGKDNEGKFFSSARQDSKQMVDTTDVTHKIALALSEASQRGGSSKKVGSPNKKNMPSPNLKSGKKHVKSGIVGAKFRKSDMDEGSSELSLGSTEGDNADYSGKLIHRNSRDNIGRVRNQEKGIKHYRKSLEPQKNTNKHLNDLKEASSGTDDGKNQSSFKSNFDTDFANAKSVRSSYKGPRKKSKKLHFEEDEGSAFDALKTLADLSLMMPETNPDTESFVQFSEGNLDESKMETDNGNSSRKSGKVFSDKGDTAPKAEGAYQLSAVSRKRKQKSFTLNNDETHTGSHLSGSQKIKVTDEVKKSTVKGKRSSVSTAHSRNLNMVKSLGNMSSNIVDKAERGDSSFSPIKVLSTNQVGQINRGRPRRKMEKPKPMIQQDHTMSENNFSGQHDKSIASYWRNSTERHKGMLINCLSSHQTRRWCTSEWFYSAIDYPWFSKREFVEYLEHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLTEEKHKLNQYRESVRSHYAEVLAGTKEGIPADLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDQHELGVEFVMDIDCMPLYPSENMPMSLIRHHITPARMNENLRELMHNGKLTQRKISEHTILSPSEKSDAIKGRCVPPAMHGFSSSCKSQAKVAGSEICNGQSASSSHSSFLERLQSKEADILAISELTRALEKKELVLSELKHMNDGVSESQKYGDNSVKDSEPFKRNYASVLMQLTEANEQVSSSLFCLRQRNAYQASSSVLSLKPIANLEDPGGQASSSNCSACHNQESISQSHIAEIVESSRRKARTMVVQATQAMLVFRKTESKVERVEDAINFINNRLSVDDSTASATNFLAIDSITLASRDQLTASSPLNILSRCPVQDDELNSSSDQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVTSLQPFCSKNLPIYGEIQKCMGIIRNQILALVPT*