AlfalfaGEDB | MsaG045757

M. sativa ssp. caerulea / MsaG045757

KEGG: K08065 K14799
GO: GO:0000976 GO:0000981 GO:0001067 GO:0001654 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0007423 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010720 GO:0010941 GO:0016070 GO:0016602 GO:0018130 GO:0019216 GO:0019218 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0022008 GO:0022603 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043408 GO:0043410 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0044877 GO:0045540 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045676 GO:0045678 GO:0045893 GO:0045935 GO:0045937 GO:0046483 GO:0046532 GO:0046534 GO:0046890 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048699 GO:0048731 GO:0048749 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050810 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0060548 GO:0062012 GO:0065007 GO:0070013 GO:0070491 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090181 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0106118 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1990823 GO:1990830 GO:1990837 GO:2000026 GO:2000027 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045757	AES91843.2	99.225	129	1	0	1	129	1	129	8.00e-91	268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045757	sp\|O82248\|NFYB5_ARATH	77.551	98	22	0	19	116	48	145	7.78e-55	171

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045757	tr\|G7JKC3\|G7JKC3_MEDTR	99.225	129	1	0	1	129	1	129	3.82e-91	268

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TFs/TRs:

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Gene ID	Type	Classification
MsaG045757	TF	NF-YB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000260	MsaG045757	0.800668	2.164347e-48	2.970921e-46
MsaG000276	MsaG045757	0.800713	2.119509e-48	2.912310e-46
MsaG000367	MsaG045757	0.828230	1.805356e-54	4.968885e-52
MsaG000761	MsaG045757	0.826347	5.075949e-54	1.325409e-51
MsaG001516	MsaG045757	0.818470	3.363556e-52	7.106205e-50
MsaG001682	MsaG045757	0.827639	2.500385e-54	6.768777e-52
MsaG003406	MsaG045757	0.831233	3.379974e-55	1.013366e-52
MsaG003751	MsaG045757	0.800764	2.069435e-48	2.846764e-46
MsaG004099	MsaG045757	0.806409	1.413955e-49	2.215717e-47
MsaG005349	MsaG045757	0.811043	1.461433e-50	2.560048e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045757	MtrunA17_Chr4g0067091	100.000	113	0	0	1	113	1	113	4.97e-82	239
MsaG045757	MtrunA17_Chr2g0296321	86.614	127	12	4	2	128	49	170	4.23e-71	213
MsaG045757	MtrunA17_Chr1g0195851	74.107	112	29	0	5	116	19	130	2.17e-61	186
MsaG045757	MtrunA17_Chr4g0076321	67.273	110	31	1	12	116	4	113	4.37e-51	158
MsaG045757	MtrunA17_Chr2g0290491	61.157	121	44	1	12	129	4	124	1.40e-50	158
MsaG045757	MtrunA17_Chr7g0263601	62.162	111	40	1	7	115	9	119	7.70e-49	154
MsaG045757	MtrunA17_Chr3g0102351	59.322	118	45	1	3	117	5	122	2.96e-48	153
MsaG045757	MtrunA17_Chr1g0185911	71.429	91	26	0	21	111	28	118	3.81e-48	152
MsaG045757	MtrunA17_Chr5g0446491	67.010	97	32	0	21	117	22	118	6.19e-48	152
MsaG045757	MtrunA17_Chr1g0191981	72.632	95	26	0	22	116	4	98	1.01e-47	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045757	AT2G47810.1	77.551	98	22	0	19	116	48	145	7.90e-56	171
MsaG045757	AT2G38880.3	69.307	101	31	0	15	115	14	114	1.98e-51	159
MsaG045757	AT2G38880.2	69.307	101	31	0	15	115	14	114	2.38e-51	159
MsaG045757	AT2G38880.1	69.307	101	31	0	15	115	14	114	2.38e-51	159
MsaG045757	AT2G38880.5	69.307	101	31	0	15	115	14	114	2.38e-51	159
MsaG045757	AT4G14540.1	60.504	119	44	1	3	121	5	120	1.07e-50	159
MsaG045757	AT1G09030.1	71.429	98	28	0	20	117	1	98	6.59e-50	155
MsaG045757	AT5G47640.1	66.667	108	32	1	21	124	26	133	7.62e-50	157
MsaG045757	AT2G38880.4	68.367	98	31	0	15	112	14	111	1.14e-49	154
MsaG045757	AT2G38880.7	69.072	97	30	0	15	111	14	110	1.82e-49	154

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Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCATCAGAGAAATGCAGGA+AGG	0.676487	8:-76689824	MsaT045757.1:CDS
ATCCTCCCAACATTTGCTAT+TGG	0.373158	8:+76689946	None:intergenic
ATGATATCTGTTGGGCTTTG+GGG	0.489965	8:-76689777	MsaT045757.1:CDS
ATGATGGATAACAACGTTGG+AGG	0.607529	8:-76690027	MsaT045757.1:CDS
ATTACGCAGAACCAATGAGA+AGG	0.655098	8:-76689738	MsaT045757.1:CDS
CAGAGAAATGCAGGAAGGAA+AGG	0.518431	8:-76689819	MsaT045757.1:CDS
CTATGCAAATACCTTCTCAT+TGG	0.433135	8:+76689727	None:intergenic
GAAAGGAGAAAGACAGTGAA+TGG	0.488041	8:-76689802	MsaT045757.1:CDS
GAAATGATGGATAACAACGT+TGG	0.629287	8:-76690030	MsaT045757.1:CDS
GAATGGTGATGATATCTGTT+GGG	0.569420	8:-76689785	MsaT045757.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	76689660	76690049	76689660	ID=MsaG045757
Chr8	mRNA	76689660	76690049	76689660	ID=MsaT045757.1;Parent=MsaG045757
Chr8	exon	76689660	76690049	76689660	ID=MsaT045757.1.exon1;Parent=MsaT045757.1
Chr8	CDS	76689660	76690049	76689660	ID=cds.MsaT045757.1;Parent=MsaT045757.1

Gene Sequence

>MsaT045757.1

ATGATGGATAACAACGTTGGAGGAAGTTCCTTTAGTAATGATGAAAACGGAGGCATAATAAAGGAACAAGATAGGTTGCTACCAATAGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTTTCAGAGTTTATAAGCTTTGTGACAAGTGAAGCATCAGAGAAATGCAGGAAGGAAAGGAGAAAGACAGTGAATGGTGATGATATCTGTTGGGCTTTGGGGACACTTGGTTTTGATGATTACGCAGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGGTAGATAGAACACCAACTACTGCTAATAATATTCAAGATAGAGGAAATTAA

Protein sequence

>MsaT045757.1

MMDNNVGGSSFSNDENGGIIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEVDRTPTTANNIQDRGN*