AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG045757


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045757 MtrunA17_Chr4g0067091 100.000 113 0 0 1 113 1 113 4.97e-82 239
MsaG045757 MtrunA17_Chr2g0296321 86.614 127 12 4 2 128 49 170 4.23e-71 213
MsaG045757 MtrunA17_Chr1g0195851 74.107 112 29 0 5 116 19 130 2.17e-61 186
MsaG045757 MtrunA17_Chr4g0076321 67.273 110 31 1 12 116 4 113 4.37e-51 158
MsaG045757 MtrunA17_Chr2g0290491 61.157 121 44 1 12 129 4 124 1.40e-50 158
MsaG045757 MtrunA17_Chr7g0263601 62.162 111 40 1 7 115 9 119 7.70e-49 154
MsaG045757 MtrunA17_Chr3g0102351 59.322 118 45 1 3 117 5 122 2.96e-48 153
MsaG045757 MtrunA17_Chr1g0185911 71.429 91 26 0 21 111 28 118 3.81e-48 152
MsaG045757 MtrunA17_Chr5g0446491 67.010 97 32 0 21 117 22 118 6.19e-48 152
MsaG045757 MtrunA17_Chr1g0191981 72.632 95 26 0 22 116 4 98 1.01e-47 149
MsaG045757 MtrunA17_Chr8g0382931 62.617 107 40 0 21 127 27 133 1.20e-47 152
MsaG045757 MtrunA17_Chr8g0384451 69.892 93 28 0 21 113 39 131 2.03e-47 152
MsaG045757 MtrunA17_Chr4g0076381 60.000 110 44 0 19 128 55 164 2.16e-47 152
MsaG045757 MtrunA17_Chr1g0165041 63.830 94 34 0 20 113 4 97 2.32e-42 138
MsaG045757 MtrunA17_Chr5g0446601 47.253 91 48 0 21 111 23 113 4.13e-25 94.4
MsaG045757 MtrunA17_Chr1g0159271 48.101 79 41 0 36 114 1 79 5.07e-22 84.0
MsaG045757 MtrunA17_Chr1g0158951 48.529 68 35 0 47 114 14 81 9.28e-19 75.9
MsaG045757 MtrunA17_Chr1g0159291 36.250 80 51 0 27 106 7 86 3.49e-17 71.2
MsaG045757 MtrunA17_Chr2g0307551 32.955 88 59 0 23 110 12 99 1.90e-16 70.9
MsaG045757 MtrunA17_Chr4g0062271 30.682 88 61 0 23 110 12 99 3.32e-15 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045757 AT2G47810.1 77.551 98 22 0 19 116 48 145 7.90e-56 171
MsaG045757 AT2G38880.3 69.307 101 31 0 15 115 14 114 1.98e-51 159
MsaG045757 AT2G38880.2 69.307 101 31 0 15 115 14 114 2.38e-51 159
MsaG045757 AT2G38880.1 69.307 101 31 0 15 115 14 114 2.38e-51 159
MsaG045757 AT2G38880.5 69.307 101 31 0 15 115 14 114 2.38e-51 159
MsaG045757 AT4G14540.1 60.504 119 44 1 3 121 5 120 1.07e-50 159
MsaG045757 AT1G09030.1 71.429 98 28 0 20 117 1 98 6.59e-50 155
MsaG045757 AT5G47640.1 66.667 108 32 1 21 124 26 133 7.62e-50 157
MsaG045757 AT2G38880.4 68.367 98 31 0 15 112 14 111 1.14e-49 154
MsaG045757 AT2G38880.7 69.072 97 30 0 15 111 14 110 1.82e-49 154
MsaG045757 AT2G38880.11 68.367 98 31 0 15 112 14 111 3.54e-49 155
MsaG045757 AT2G38880.8 68.367 98 31 0 15 112 14 111 3.54e-49 155
MsaG045757 AT2G38880.9 68.367 98 31 0 15 112 14 111 4.81e-49 154
MsaG045757 AT2G38880.10 68.367 98 31 0 15 112 14 111 4.81e-49 154
MsaG045757 AT2G38880.6 68.367 98 31 0 15 112 14 111 4.81e-49 154
MsaG045757 AT3G53340.3 66.337 101 34 0 20 120 27 127 4.88e-49 154
MsaG045757 AT3G53340.2 66.337 101 34 0 20 120 27 127 4.88e-49 154
MsaG045757 AT3G53340.5 68.750 96 30 0 20 115 27 122 1.35e-48 154
MsaG045757 AT3G53340.1 68.750 96 30 0 20 115 27 122 1.35e-48 154
MsaG045757 AT2G37060.2 67.708 96 31 0 20 115 28 123 8.42e-48 151
MsaG045757 AT2G37060.3 67.708 96 31 0 20 115 28 123 8.42e-48 151
MsaG045757 AT2G37060.1 67.708 96 31 0 20 115 28 123 8.42e-48 151
MsaG045757 AT3G53340.4 68.817 93 29 0 20 112 27 119 2.03e-47 149
MsaG045757 AT2G13570.1 60.345 116 46 0 1 116 15 130 2.22e-47 152
MsaG045757 AT5G47670.2 61.905 105 36 1 16 116 19 123 4.94e-45 145
MsaG045757 AT5G47670.1 61.905 105 36 1 16 116 48 152 7.73e-45 146
MsaG045757 AT5G47670.3 61.905 105 36 1 16 116 48 152 7.73e-45 146
MsaG045757 AT1G21970.1 52.632 114 45 1 12 116 40 153 1.11e-40 135
MsaG045757 AT5G08190.2 30.612 98 66 1 22 117 11 108 1.14e-15 69.3
MsaG045757 AT5G08190.1 30.851 94 63 1 22 113 11 104 3.35e-15 68.2
MsaG045757 AT5G23090.4 30.928 97 65 1 23 117 12 108 4.39e-15 67.8
MsaG045757 AT5G23090.5 31.183 93 62 1 23 113 12 104 2.68e-14 65.9
MsaG045757 AT5G23090.2 31.183 93 62 1 23 113 12 104 2.68e-14 65.9
MsaG045757 AT5G23090.1 31.183 93 62 1 23 113 12 104 2.68e-14 65.9

Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATATCTGTTGGGCTTT+GGG 0.254012 8:-76689778 MsaT045757.1:CDS
TGATGATATCTGTTGGGCTT+TGG 0.268785 8:-76689779 MsaT045757.1:CDS
GCATAGATATAGAGAATTAG+AGG 0.332962 8:-76689710 MsaT045757.1:CDS
ATCCTCCCAACATTTGCTAT+TGG 0.373158 8:+76689946 None:intergenic
TGAATATTATTAGCAGTAGT+TGG 0.384741 8:+76689676 None:intergenic
TGTTGGGCTTTGGGGACACT+TGG 0.405725 8:-76689769 MsaT045757.1:CDS
CTATGCAAATACCTTCTCAT+TGG 0.433135 8:+76689727 None:intergenic
GCTAATAATATTCAAGATAG+AGG 0.434183 8:-76689667 MsaT045757.1:CDS
TGAAAACGGAGGCATAATAA+AGG 0.463124 8:-76689986 MsaT045757.1:CDS
GCATAATAAAGGAACAAGAT+AGG 0.472463 8:-76689975 MsaT045757.1:CDS
TTGCTACCAATAGCAAATGT+TGG 0.481402 8:-76689952 MsaT045757.1:CDS
TGCTACCAATAGCAAATGTT+GGG 0.486912 8:-76689951 MsaT045757.1:CDS
GTGAAGCATCAGAGAAATGC+AGG 0.487879 8:-76689828 MsaT045757.1:CDS
GAAAGGAGAAAGACAGTGAA+TGG 0.488041 8:-76689802 MsaT045757.1:CDS
ATGATATCTGTTGGGCTTTG+GGG 0.489965 8:-76689777 MsaT045757.1:CDS
TCCTTTAGTAATGATGAAAA+CGG 0.512602 8:-76690000 MsaT045757.1:CDS
CAGAGAAATGCAGGAAGGAA+AGG 0.518431 8:-76689819 MsaT045757.1:CDS
GAATGGTGATGATATCTGTT+GGG 0.569420 8:-76689785 MsaT045757.1:CDS
ATGATGGATAACAACGTTGG+AGG 0.607529 8:-76690027 MsaT045757.1:CDS
TGAATGGTGATGATATCTGT+TGG 0.622578 8:-76689786 MsaT045757.1:CDS
GAAATGATGGATAACAACGT+TGG 0.629287 8:-76690030 MsaT045757.1:CDS
TTTAGTAATGATGAAAACGG+AGG 0.646824 8:-76689997 MsaT045757.1:CDS
ATTACGCAGAACCAATGAGA+AGG 0.655098 8:-76689738 MsaT045757.1:CDS
TACCAATAGCAAATGTTGGG+AGG 0.664077 8:-76689948 MsaT045757.1:CDS
AGCATCAGAGAAATGCAGGA+AGG 0.676487 8:-76689824 MsaT045757.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 76689660 76690049 76689660 ID=MsaG045757
Chr8 mRNA 76689660 76690049 76689660 ID=MsaT045757.1;Parent=MsaG045757
Chr8 exon 76689660 76690049 76689660 ID=MsaT045757.1.exon1;Parent=MsaT045757.1
Chr8 CDS 76689660 76690049 76689660 ID=cds.MsaT045757.1;Parent=MsaT045757.1
Gene Sequence

>MsaT045757.1

ATGATGGATAACAACGTTGGAGGAAGTTCCTTTAGTAATGATGAAAACGGAGGCATAATAAAGGAACAAGATAGGTTGCTACCAATAGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTTTCAGAGTTTATAAGCTTTGTGACAAGTGAAGCATCAGAGAAATGCAGGAAGGAAAGGAGAAAGACAGTGAATGGTGATGATATCTGTTGGGCTTTGGGGACACTTGGTTTTGATGATTACGCAGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGGTAGATAGAACACCAACTACTGCTAATAATATTCAAGATAGAGGAAATTAA

Protein sequence

>MsaT045757.1

MMDNNVGGSSFSNDENGGIIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEVDRTPTTANNIQDRGN*