AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG045760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045760 MtrunA17_Chr4g0067141 93.351 376 24 1 1 375 1 376 0.0 687
MsaG045760 MtrunA17_Chr4g0067671 69.697 363 97 3 1 356 1 357 3.43e-178 499
MsaG045760 MtrunA17_Chr4g0067121 49.541 327 164 1 44 369 52 378 5.63e-111 330
MsaG045760 MtrunA17_Chr2g0295761 48.795 332 169 1 38 368 55 386 7.89e-109 324
MsaG045760 MtrunA17_Chr2g0296301 46.471 340 179 2 32 369 26 364 7.23e-108 322
MsaG045760 MtrunA17_Chr2g0296221 47.429 350 177 3 27 369 63 412 1.99e-102 309
MsaG045760 MtrunA17_Chr2g0296151 46.041 341 180 2 31 369 30 368 2.50e-102 307
MsaG045760 MtrunA17_Chr2g0296171 48.795 332 163 3 45 369 62 393 3.62e-101 305
MsaG045760 MtrunA17_Chr2g0296111 47.384 344 172 5 31 369 29 368 3.88e-101 304
MsaG045760 MtrunA17_Chr2g0296711 47.273 330 169 3 45 369 55 384 5.68e-101 305
MsaG045760 MtrunA17_Chr2g0296121 47.507 341 175 2 33 371 118 456 1.43e-100 305
MsaG045760 MtrunA17_Chr2g0296251 43.883 376 172 3 32 369 22 396 2.56e-100 303
MsaG045760 MtrunA17_Chr2g0295731 42.507 367 208 2 5 369 10 375 1.77e-99 300
MsaG045760 MtrunA17_Chr2g0295741 45.614 342 182 2 30 369 35 374 8.80e-99 298
MsaG045760 MtrunA17_Chr2g0296291 43.536 379 172 3 32 372 25 399 4.25e-98 297
MsaG045760 MtrunA17_Chr2g0296741 45.161 341 182 2 34 369 61 401 2.08e-97 296
MsaG045760 MtrunA17_Chr2g0296191 46.705 349 179 3 27 368 646 994 6.44e-96 308
MsaG045760 MtrunA17_Chr2g0296191 44.904 363 196 2 10 369 147 508 2.55e-95 306
MsaG045760 MtrunA17_Chr2g0296721 44.543 339 184 2 34 368 41 379 1.21e-94 288
MsaG045760 MtrunA17_Chr2g0315731 43.314 344 182 3 34 368 61 400 1.77e-93 286
MsaG045760 MtrunA17_Chr2g0296231 44.985 329 174 3 45 368 51 377 2.02e-91 280
MsaG045760 MtrunA17_Chr2g0296181 42.609 345 158 5 34 369 42 355 8.21e-84 260
MsaG045760 MtrunA17_Chr2g0286191 42.042 333 179 4 44 369 32 357 2.32e-80 250
MsaG045760 MtrunA17_Chr2g0296131 53.846 156 72 0 214 369 5 160 2.89e-57 184
MsaG045760 MtrunA17_Chr4g0001831 32.773 357 227 5 25 369 13 368 1.16e-55 187
MsaG045760 MtrunA17_Chr2g0296161 53.947 152 70 0 218 369 5 156 2.55e-53 174
MsaG045760 MtrunA17_Chr2g0296551 47.253 182 96 0 188 369 1 182 2.64e-52 172
MsaG045760 MtrunA17_Chr2g0296211 48.824 170 87 0 200 369 187 356 3.14e-50 172
MsaG045760 MtrunA17_Chr2g0296211 47.126 87 44 1 35 119 109 195 7.28e-16 78.2
MsaG045760 MtrunA17_Chr2g0296701 49.020 153 78 0 217 369 2 154 7.24e-48 160
MsaG045760 MtrunA17_Chr2g0286221 47.436 156 80 2 214 369 14 167 5.79e-40 140
MsaG045760 MtrunA17_Chr8g0377781 29.032 341 232 4 38 371 37 374 1.70e-38 141
MsaG045760 MtrunA17_Chr8g0377801 27.485 342 244 3 38 375 50 391 4.92e-38 140
MsaG045760 MtrunA17_Chr2g0296751 49.606 127 64 0 243 369 1 127 2.04e-37 132
MsaG045760 MtrunA17_Chr4g0067131 70.588 85 25 0 287 371 1 85 6.45e-35 123
MsaG045760 MtrunA17_Chr2g0295711 39.535 172 100 2 23 190 24 195 6.46e-32 119
MsaG045760 MtrunA17_Chr2g0295721 46.154 117 63 0 216 332 3 119 2.91e-31 115
MsaG045760 MtrunA17_Chr2g0296561 43.382 136 75 1 16 149 7 142 2.55e-27 105
MsaG045760 MtrunA17_Chr2g0295751 43.165 139 75 2 30 166 36 172 2.66e-25 107
MsaG045760 MtrunA17_Chr4g0067681 72.131 61 17 0 276 336 1 61 2.36e-24 94.7
MsaG045760 MtrunA17_Chr2g0294671 27.273 275 176 7 80 340 215 479 3.03e-16 80.1
MsaG045760 MtrunA17_Chr3g0127891 24.409 254 171 6 89 322 217 469 2.87e-14 73.9
MsaG045760 MtrunA17_Chr8g0339041 22.789 294 208 8 87 369 63 348 4.47e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045760 AT5G07900.1 33.728 338 208 5 44 370 69 401 2.90e-61 202
MsaG045760 AT1G21150.1 31.212 330 219 4 44 366 56 384 1.71e-46 163
MsaG045760 AT1G21150.2 31.212 330 219 4 44 366 120 448 5.22e-46 164
MsaG045760 AT1G21150.3 30.030 333 225 4 41 366 17 348 8.77e-45 158
MsaG045760 AT1G61980.3 28.338 367 222 7 44 370 52 417 9.87e-43 154
MsaG045760 AT1G61980.2 28.338 367 222 7 44 370 52 417 9.87e-43 154
MsaG045760 AT1G61980.1 28.338 367 222 7 44 370 52 417 9.87e-43 154
MsaG045760 AT1G61970.2 26.750 400 242 10 1 354 5 399 1.09e-36 138
MsaG045760 AT1G61970.7 26.750 400 242 10 1 354 5 399 1.09e-36 138
MsaG045760 AT1G61970.6 26.750 400 242 10 1 354 5 399 1.09e-36 138
MsaG045760 AT1G61970.3 26.750 400 242 10 1 354 5 399 1.09e-36 138
MsaG045760 AT1G61970.5 26.750 400 242 10 1 354 5 399 1.09e-36 138
MsaG045760 AT1G61970.4 26.750 400 242 10 1 354 5 399 1.09e-36 138
MsaG045760 AT1G61970.1 26.750 400 242 10 1 354 5 399 1.09e-36 138
MsaG045760 AT1G62120.1 27.318 399 238 10 23 371 28 424 1.65e-36 137
MsaG045760 AT1G61990.2 27.518 407 242 9 8 368 9 408 4.07e-35 133
MsaG045760 AT1G61990.1 27.518 407 242 9 8 368 9 408 4.07e-35 133
MsaG045760 AT1G61960.1 24.890 454 255 10 5 374 6 457 6.84e-32 125
MsaG045760 AT1G62150.1 25.255 392 217 8 44 360 58 448 8.37e-30 119
MsaG045760 AT5G64950.1 28.739 341 228 7 42 369 38 376 8.69e-30 118
MsaG045760 AT3G46950.1 30.196 255 170 5 33 283 38 288 8.58e-27 111
MsaG045760 AT1G62110.1 28.745 247 173 2 44 287 52 298 2.23e-25 107
MsaG045760 AT1G62110.1 32.000 100 64 1 259 354 340 439 6.31e-11 63.9
MsaG045760 AT1G62085.1 30.453 243 166 2 44 283 55 297 3.19e-25 106
MsaG045760 AT1G62085.2 30.453 243 166 2 44 283 55 297 3.19e-25 106
MsaG045760 AT1G62010.1 24.024 333 212 6 77 370 71 401 7.79e-25 105
MsaG045760 AT1G56380.1 24.658 365 225 9 42 360 14 374 3.94e-24 102
MsaG045760 AT1G56380.2 24.658 365 225 9 42 360 25 385 4.62e-24 102
MsaG045760 AT5G23930.1 28.369 282 189 7 39 314 50 324 5.09e-21 94.7
MsaG045760 AT4G14605.2 31.928 166 103 6 171 330 222 383 2.35e-12 68.6
MsaG045760 AT4G14605.1 31.928 166 103 6 171 330 222 383 2.35e-12 68.6
MsaG045760 AT1G79220.1 24.232 293 206 7 87 369 91 377 5.11e-11 64.3

Find 82 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAGGAGATTAAGGAATT+AGG 0.197682 8:-76707739 MsaT045760.1:CDS
TGAAGGAGGGAACTACATTT+TGG 0.216480 8:+76708351 None:intergenic
ATCAAGCAAGAATTTCAAAT+TGG 0.217026 8:+76707843 None:intergenic
GGAGGCTGTGGAGGAGATTA+AGG 0.222304 8:-76707746 MsaT045760.1:CDS
AAATTGAAGCTTTGGCAAAA+TGG 0.249268 8:+76708059 None:intergenic
AACTCATCCTTCAAATAAAA+TGG 0.264656 8:+76707370 None:intergenic
TTGGCTATTAAAGTTATATC+AGG 0.283508 8:-76707305 MsaT045760.1:CDS
TGGAGGAGATTAAGGAATTA+GGG 0.290150 8:-76707738 MsaT045760.1:CDS
AACGATTCACATACCTTTGC+AGG 0.292723 8:+76707344 None:intergenic
TGTAGCATTGTTGGCCAAAA+AGG 0.301284 8:-76707689 MsaT045760.1:CDS
TCCTACCTCACTAACAATTT+CGG 0.319551 8:-76708249 MsaT045760.1:CDS
ACGAAGGAAACGAGGGTTTC+TGG 0.321312 8:+76707990 None:intergenic
AAGTTGATGCCTTGAAGAAC+TGG 0.332328 8:-76707639 MsaT045760.1:CDS
CTTTGGCAAAATGGATTTGA+TGG 0.343012 8:+76708068 None:intergenic
ACGGTGATGATTATGTCTTC+TGG 0.353018 8:+76708015 None:intergenic
ATCCTTCTTCATCAAACCTT+TGG 0.363759 8:+76707408 None:intergenic
GGTGCTGCCAGGAGCAATAA+AGG 0.392734 8:+76707499 None:intergenic
TTGGGATCCTTTATTGCTCC+TGG 0.395686 8:-76707506 MsaT045760.1:CDS
TCAAGCAAGAATTTCAAATT+GGG 0.406507 8:+76707844 None:intergenic
CTTCTTACCAATTCAAAAGT+AGG 0.408654 8:+76707943 None:intergenic
TTGGATCCAACAACTTGGTT+GGG 0.412366 8:-76707524 MsaT045760.1:CDS
TTCGAATGATGGATTGTATC+TGG 0.421038 8:+76708118 None:intergenic
TTGAAATTCTTGCTTGATGC+TGG 0.424349 8:-76707838 MsaT045760.1:CDS
TAACCTTATGCTACGGTCTT+CGG 0.426601 8:-76707572 MsaT045760.1:CDS
AACCTTTGGAAAGAAGATAC+TGG 0.430985 8:+76707422 None:intergenic
AAGGATCCCAACCAAGTTGT+TGG 0.437597 8:+76707518 None:intergenic
GACGGGATCCCTTCGAATGA+TGG 0.441893 8:+76708107 None:intergenic
ATCAACTTTGGCATCCCATT+GGG 0.443217 8:+76707654 None:intergenic
GTTCTTCAAGGCATCAACTT+TGG 0.447538 8:+76707642 None:intergenic
TTCCAAAGGTTTGATGAAGA+AGG 0.448858 8:-76707410 MsaT045760.1:CDS
GAAACGAGGGTTTCTGGTTA+CGG 0.455889 8:+76707996 None:intergenic
AGAATAACCCCAGTTCTTCA+AGG 0.473452 8:+76707630 None:intergenic
CGAAAAGCTCTGGTGCTGCC+AGG 0.473564 8:+76707488 None:intergenic
ATAACAGTATCGGGTTTCTC+CGG 0.477621 8:+76708174 None:intergenic
GGCTATCACTAAATCCCAAT+GGG 0.478420 8:-76707668 MsaT045760.1:CDS
CATCAACTTTGGCATCCCAT+TGG 0.482441 8:+76707653 None:intergenic
TCGGACTTAGTATAGAGAAA+AGG 0.483597 8:-76707468 MsaT045760.1:CDS
TGTCCGAAGACCGTAGCATA+AGG 0.485794 8:+76707569 None:intergenic
TTTGGATCCAACAACTTGGT+TGG 0.491206 8:-76707525 MsaT045760.1:CDS
AGCGGTGTGGTTGCAGATGA+AGG 0.493188 8:+76708334 None:intergenic
TGAGAAGAGCTCTGAGACGG+TGG 0.502155 8:+76708379 None:intergenic
TTCTTACCAATTCAAAAGTA+GGG 0.509482 8:+76707944 None:intergenic
TGGCTATTAAAGTTATATCA+GGG 0.511825 8:-76707304 MsaT045760.1:CDS
ATCCAGTATCTTCTTTCCAA+AGG 0.514435 8:-76707424 MsaT045760.1:CDS
TTTGGCAAAATGGATTTGAT+GGG 0.517742 8:+76708069 None:intergenic
ATACTAAGTCCGAAAAGCTC+TGG 0.524827 8:+76707478 None:intergenic
GAAGACCGTAGCATAAGGTT+AGG 0.532188 8:+76707574 None:intergenic
CGACCATCACTAATTGTAGC+AGG 0.532661 8:+76707874 None:intergenic
TGGTTGATCTGAATCTGAAA+TGG 0.533288 8:+76708284 None:intergenic
TAGAGAAAAGGCTTAGTCCA+AGG 0.534773 8:-76707456 MsaT045760.1:CDS
GATGGATTGTATCTGGTCAA+TGG 0.537796 8:+76708125 None:intergenic
AAGGTCTGCTTGTAAGCAAA+CGG 0.538087 8:+76707794 None:intergenic
TACTGGATAACTGAAGCCCT+TGG 0.548630 8:+76707439 None:intergenic
AGTTGATGCCTTGAAGAACT+GGG 0.549779 8:-76707638 MsaT045760.1:CDS
GCCGAAATTGTTAGTGAGGT+AGG 0.554634 8:+76708248 None:intergenic
TAGGGATAATGTGTTTGTTG+AGG 0.555795 8:+76707962 None:intergenic
AGGCTATCACTAAATCCCAA+TGG 0.578405 8:-76707669 MsaT045760.1:CDS
GGGTTTGAGACGAAAACGAC+GGG 0.584914 8:+76708090 None:intergenic
TTTCCTGCTACAATTAGTGA+TGG 0.596714 8:-76707877 MsaT045760.1:CDS
AGATACAATCCATCATTCGA+AGG 0.598072 8:-76708116 MsaT045760.1:CDS
TCTGGTCAATGGAGAAACCA+TGG 0.599326 8:+76708136 None:intergenic
AGGATGAGTTGTTCCTGCAA+AGG 0.601687 8:-76707357 MsaT045760.1:CDS
CTGGTCAATGGAGAAACCAT+GGG 0.604216 8:+76708137 None:intergenic
AGAGAAAAGGCTTAGTCCAA+GGG 0.604964 8:-76707455 MsaT045760.1:CDS
AGAACAAGTTGTTGAGAGAG+CGG 0.608804 8:+76708316 None:intergenic
GCTATTAAAGTTATATCAGG+GGG 0.615187 8:-76707302 MsaT045760.1:CDS
TTGGCAAAATGGATTTGATG+GGG 0.615509 8:+76708070 None:intergenic
GTGTGGTTGCAGATGAAGGA+GGG 0.616712 8:+76708338 None:intergenic
ATAAGCCGAAATTGTTAGTG+AGG 0.618337 8:+76708244 None:intergenic
GAGGGCCTAACCTTATGCTA+CGG 0.624819 8:-76707579 MsaT045760.1:CDS
AGGTAGGAAACTGTGAAAGA+TGG 0.624924 8:+76708264 None:intergenic
GGCTATTAAAGTTATATCAG+GGG 0.627367 8:-76707303 MsaT045760.1:CDS
AGTTGAGAAGAGCTCTGAGA+CGG 0.630444 8:+76708376 None:intergenic
AGGCTTACACGAAGGAAACG+AGG 0.635953 8:+76707982 None:intergenic
GATACAATCCATCATTCGAA+GGG 0.637159 8:-76708115 MsaT045760.1:CDS
GGCTTACACGAAGGAAACGA+GGG 0.649598 8:+76707983 None:intergenic
GTTGATGCCTTGAAGAACTG+GGG 0.672967 8:-76707637 MsaT045760.1:CDS
GTTTGTTGAGGCTTACACGA+AGG 0.677380 8:+76707974 None:intergenic
GGTGTGGTTGCAGATGAAGG+AGG 0.681954 8:+76708337 None:intergenic
GGGGTTTGAGACGAAAACGA+CGG 0.698254 8:+76708089 None:intergenic
TTGATCTGAATCTGAAATGG+CGG 0.739869 8:+76708287 None:intergenic
AAGTTGTTGAGAGAGCGGTG+TGG 0.835738 8:+76708321 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 76707282 76708412 76707282 ID=MsaG045760
Chr8 mRNA 76707282 76708412 76707282 ID=MsaT045760.1;Parent=MsaG045760
Chr8 exon 76707282 76708412 76707282 ID=MsaT045760.1.exon1;Parent=MsaT045760.1
Chr8 CDS 76707282 76708412 76707282 ID=cds.MsaT045760.1;Parent=MsaT045760.1
Gene Sequence

>MsaT045760.1

ATGATTCACTGCCACCGTCTCAGAGCTCTTCTCAACTTCCCAAAATGTAGTTCCCTCCTTCATCTGCAACCACACCGCTCTCTCAACAACTTGTTCTTCTCTACCGCCATTTCAGATTCAGATCAACCATCTTTCACAGTTTCCTACCTCACTAACAATTTCGGCTTATCTTCACAAGATGCTCTCAAAGCGTCTAAACGACTTCGTTTTAATACTCCGGAGAAACCCGATACTGTTATCGCCTTTTTCAAAACCCATGGTTTCTCCATTGACCAGATACAATCCATCATTCGAAGGGATCCCGTCGTTTTCGTCTCAAACCCCATCAAATCCATTTTGCCAAAGCTTCAATTTTTAGCTTCTAAAGGCGTTTCTCCAGAAGACATAATCATCACCGTAACCAGAAACCCTCGTTTCCTTCGTGTAAGCCTCAACAAACACATTATCCCTACTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTGATAAAAAAGCTATTGATTGTGTAATTGCATTTCCTGCTACAATTAGTGATGGTCGCATGAAACCCAATTTGAAATTCTTGCTTGATGCTGGTGTCACTCGTTCAAGTATTTACCGTTTGCTTACAAGCAGACCTTCTGTAATTTTTTCATCTGTTTTGAGGGAGGCTGTGGAGGAGATTAAGGAATTAGGGTTTCATCCTTCTAGTTACAATTTTTGTGTAGCATTGTTGGCCAAAAAGGCTATCACTAAATCCCAATGGGATGCCAAAGTTGATGCCTTGAAGAACTGGGGTTATTCTGAAGATGCAATTTTAACTGCATTTAAAAGAGGGCCTAACCTTATGCTACGGTCTTCGGACAAACTCAATGCAGTGATGCGTTTTTGGATCCAACAACTTGGTTGGGATCCTTTATTGCTCCTGGCAGCACCAGAGCTTTTCGGACTTAGTATAGAGAAAAGGCTTAGTCCAAGGGCTTCAGTTATCCAGTATCTTCTTTCCAAAGGTTTGATGAAGAAGGATGCTAGCTTAACTGCACCATTTTATTTGAAGGATGAGTTGTTCCTGCAAAGGTATGTGAATCGTTTTGAGGAGGAAGCATCTTGGCTATTAAAGTTATATCAGGGGGAGGGTGCTCGCATTCGCTGA

Protein sequence

>MsaT045760.1

MIHCHRLRALLNFPKCSSLLHLQPHRSLNNLFFSTAISDSDQPSFTVSYLTNNFGLSSQDALKASKRLRFNTPEKPDTVIAFFKTHGFSIDQIQSIIRRDPVVFVSNPIKSILPKLQFLASKGVSPEDIIITVTRNPRFLRVSLNKHIIPTFELVRSFCPSDKKAIDCVIAFPATISDGRMKPNLKFLLDAGVTRSSIYRLLTSRPSVIFSSVLREAVEEIKELGFHPSSYNFCVALLAKKAITKSQWDAKVDALKNWGYSEDAILTAFKRGPNLMLRSSDKLNAVMRFWIQQLGWDPLLLLAAPELFGLSIEKRLSPRASVIQYLLSKGLMKKDASLTAPFYLKDELFLQRYVNRFEEEASWLLKLYQGEGARIR*