AlfalfaGEDB | MsaG045829

M. sativa ssp. caerulea / MsaG045829

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045829	XP_013458302.1	97.222	144	1	1	1	141	1	144	2.46e-94	278

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045829	sp\|Q9FJ10\|GAT16_ARATH	54.362	149	49	6	2	141	1	139	1.77e-40	135

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045829	tr\|A0A072UTE2\|A0A072UTE2_MEDTR	97.222	144	1	1	1	141	1	144	1.18e-94	278

TFs/TRs:

Gene ID	Type	Classification
MsaG045829	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001907	MsaG045829	0.818132	4.007035e-52	8.392167e-50
MsaG007649	MsaG045829	0.839059	3.662158e-57	1.388200e-54
MsaG045829	MsaG012743	0.812418	7.361005e-51	1.333804e-48
MsaG045829	MsaG016342	0.825115	9.916353e-54	2.502337e-51
MsaG045829	MsaG022890	0.801473	1.484511e-48	2.075035e-46
MsaG012717	MsaG045829	0.825298	8.981910e-54	2.277928e-51
MsaG018356	MsaG045829	0.848936	8.460045e-60	4.421756e-57

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045829	MtrunA17_Chr4g0068031	97.222	144	1	1	1	141	1	144	2.26e-98	278
MsaG045829	MtrunA17_Chr7g0271861	50.877	114	50	3	29	141	21	129	1.02e-30	107
MsaG045829	MtrunA17_Chr1g0151461	63.265	49	18	0	26	74	183	231	4.31e-17	75.9
MsaG045829	MtrunA17_Chr5g0404131	58.000	50	18	1	20	66	179	228	1.71e-13	65.9
MsaG045829	MtrunA17_Chr4g0071301	68.421	38	12	0	22	59	184	221	4.91e-13	64.7
MsaG045829	MtrunA17_Chr2g0299081	76.667	30	7	0	30	59	169	198	3.71e-12	62.0
MsaG045829	MtrunA17_Chr8g0373231	64.865	37	13	0	30	66	125	161	3.93e-12	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045829	AT5G49300.1	54.362	149	49	6	2	141	1	139	1.80e-41	135
MsaG045829	AT3G06740.1	56.028	141	43	6	7	141	22	149	3.71e-40	132
MsaG045829	AT3G16870.1	42.675	157	43	5	27	141	39	190	1.61e-28	103
MsaG045829	AT4G16141.1	45.062	162	36	7	29	137	36	197	1.21e-26	99.0
MsaG045829	AT5G26930.1	67.442	43	13	1	30	71	26	68	1.86e-16	70.9
MsaG045829	AT5G56860.1	70.732	41	12	0	23	63	223	263	4.42e-15	71.2
MsaG045829	AT2G18380.1	50.000	66	29	1	30	91	92	157	1.22e-13	65.5
MsaG045829	AT4G36620.1	46.970	66	23	1	30	95	75	128	3.94e-13	64.3
MsaG045829	AT4G26150.1	77.419	31	7	0	30	60	199	229	5.32e-13	65.1
MsaG045829	AT3G50870.1	67.568	37	12	0	30	66	152	188	2.91e-12	62.8

Find 33 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCAGAGATTATTGAATTT+AGG	0.186034	8:-77348955	MsaT045829.1:CDS
TTGTTGATGTCTCTTTCTTA+TGG	0.189410	8:-77348868	MsaT045829.1:CDS
TCGATCACATTGGAAGAAAT+TGG	0.220158	8:-77348914	MsaT045829.1:CDS
AGCAGAGATTATTGAATTTA+GGG	0.227823	8:-77348954	MsaT045829.1:CDS
AAGAAGAAGAGAGCGATATT+AGG	0.241089	8:-77349069	MsaT045829.1:CDS
ACCACGCCATAGAGGAGTTT+TGG	0.324967	8:+77349228	None:intergenic
TCTGATGAAACGGCGGCGTT+AGG	0.333300	8:+77349292	None:intergenic
AGAAGAAGAGAGCGATATTA+GGG	0.353234	8:-77349068	MsaT045829.1:CDS
CTGATGAAACGGCGGCGTTA+GGG	0.382761	8:+77349293	None:intergenic
AACGAAGAAGGAACAAGAAA+GGG	0.398579	8:-77349030	MsaT045829.1:CDS
GAACTTCCAAAACTCCTCTA+TGG	0.415227	8:-77349234	MsaT045829.1:CDS
TGTGCAATGCTTGCGGGATC+AGG	0.415666	8:-77349098	MsaT045829.1:CDS
CGATCACATTGGAAGAAATT+GGG	0.429367	8:-77348913	MsaT045829.1:CDS
CTATGGCGTGGTGGTCCTGC+AGG	0.434557	8:-77349217	MsaT045829.1:CDS
CAACGAAGAAGGAACAAGAA+AGG	0.448446	8:-77349031	MsaT045829.1:CDS
TTAATTACCTTTGGTCCTGC+AGG	0.462097	8:+77349202	None:intergenic
AGTCACTGTGCAATGCTTGC+GGG	0.486682	8:-77349104	MsaT045829.1:CDS
ATGCTTGCGGGATCAGGAGC+AGG	0.490836	8:-77349092	MsaT045829.1:CDS
AGTGGCGGTGGAAGCAAAGT+TGG	0.516175	8:-77348994	MsaT045829.1:CDS
GGTGGTTGATCACAGTGATA+AGG	0.521811	8:-77349455	MsaT045829.1:intron
AGCAAAGGAAACAACGAAGA+AGG	0.525059	8:-77349042	MsaT045829.1:CDS
ATTGTTGTTATCTGATGAAA+CGG	0.531824	8:+77349282	None:intergenic
TTTCATATTCAGGTATCAGA+AGG	0.541216	8:-77349328	MsaT045829.1:intron
CAGTCACTGTGCAATGCTTG+CGG	0.579698	8:-77349105	MsaT045829.1:CDS
TGGTGGTCCTGCAGGACCAA+AGG	0.593805	8:-77349209	MsaT045829.1:intron
AAGAAAACATGTGCTGATTG+CGG	0.603128	8:-77349256	MsaT045829.1:CDS
TGTTTATGAATCGATCACAT+TGG	0.615171	8:-77348924	MsaT045829.1:CDS
GCAGGACCACCACGCCATAG+AGG	0.620645	8:+77349220	None:intergenic
ACGAAGAAGGAACAAGAAAG+GGG	0.621165	8:-77349029	MsaT045829.1:CDS
TCCAAAACTCCTCTATGGCG+TGG	0.637585	8:-77349229	MsaT045829.1:CDS
GCGATATTAGGGATAAGCAA+AGG	0.653138	8:-77349057	MsaT045829.1:CDS
AAAACTCCTCTATGGCGTGG+TGG	0.657560	8:-77349226	MsaT045829.1:CDS
GTTGTTATCTGATGAAACGG+CGG	0.695776	8:+77349285	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	77348852	77349479	77348852	ID=MsaG045829
Chr8	mRNA	77348852	77349479	77348852	ID=MsaT045829.1;Parent=MsaG045829
Chr8	exon	77348852	77349124	77348852	ID=MsaT045829.1.exon3;Parent=MsaT045829.1
Chr8	CDS	77348852	77349124	77348852	ID=cds.MsaT045829.1;Parent=MsaT045829.1
Chr8	exon	77349210	77349338	77349210	ID=MsaT045829.1.exon2;Parent=MsaT045829.1
Chr8	CDS	77349210	77349338	77349210	ID=cds.MsaT045829.1;Parent=MsaT045829.1
Chr8	exon	77349456	77349479	77349456	ID=MsaT045829.1.exon1;Parent=MsaT045829.1
Chr8	CDS	77349456	77349479	77349456	ID=cds.MsaT045829.1;Parent=MsaT045829.1

Gene Sequence

>MsaT045829.1

ATGGTGGTTGATCACAGTGATAAGGTATCAGAAGGTGAAGATTCAAACCCTAACGCCGCCGTTTCATCAGATAACAACAATCCAAAGAAAACATGTGCTGATTGCGGAACTTCCAAAACTCCTCTATGGCGTGGTGGTCCTGCAGGACCAAAGTCACTGTGCAATGCTTGCGGGATCAGGAGCAGGAAGAAGAAGAGAGCGATATTAGGGATAAGCAAAGGAAACAACGAAGAAGGAACAAGAAAGGGGAAAAAGAGTAACAGTGGCGGTGGAAGCAAAGTTGGTGATAATTTGAACATGAAGCAGAGATTATTGAATTTAGGGAAAGAAGTGTTTATGAATCGATCACATTGGAAGAAATTGGGAGAAGATGAACAAGCTGCTGTGTTGTTGATGTCTCTTTCTTATGGATCTGTTTATGCCTAA

Protein sequence

>MsaT045829.1

MVVDHSDKVSEGEDSNPNAAVSSDNNNPKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEEGTRKGKKSNSGGGSKVGDNLNMKQRLLNLGKEVFMNRSHWKKLGEDEQAAVLLMSLSYGSVYA*