AlfalfaGEDB | MsaG045863

M. sativa ssp. caerulea / MsaG045863

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF00989.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045863	XP_003609781.1	97.948	731	14	1	1	730	1	731	0.0	1491

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045863	sp\|Q9FPR3\|EDR1_ARATH	61.255	271	105	0	446	716	656	926	3.64e-111	362

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045863	tr\|G7JNX1\|G7JNX1_MEDTR	97.948	731	14	1	1	730	1	731	0.0	1491

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004037	MsaG045863	0.808642	4.773280e-50	7.888815e-48
MsaG004958	MsaG045863	0.806894	1.118036e-49	1.772058e-47
MsaG005050	MsaG045863	0.851124	2.078350e-60	1.170933e-57
MsaG006023	MsaG045863	0.845949	5.546866e-59	2.622547e-56
MsaG006203	MsaG045863	0.831276	3.299098e-55	9.903421e-53
MsaG007183	MsaG045863	0.822623	3.783046e-53	8.921223e-51
MsaG007328	MsaG045863	0.810075	2.359368e-50	4.036516e-48
MsaG007744	MsaG045863	0.840947	1.185152e-57	4.766183e-55
MsaG009081	MsaG045863	0.857584	2.879045e-62	2.044078e-59
MsaG010102	MsaG045863	0.837021	1.217395e-56	4.333099e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045863	MtrunA17_Chr4g0068411	97.948	731	14	1	1	730	1	731	0.0	1491
MsaG045863	MtrunA17_Chr2g0294351	66.846	745	223	8	2	730	1	737	0.0	961
MsaG045863	MtrunA17_Chr5g0397931	63.707	259	94	0	453	711	417	675	8.00e-118	370
MsaG045863	MtrunA17_Chr5g0397931	36.364	176	93	4	86	254	65	228	7.15e-25	110
MsaG045863	MtrunA17_Chr1g0191171	59.712	278	112	0	446	723	676	953	3.16e-110	358
MsaG045863	MtrunA17_Chr6g0482711	57.432	296	121	1	424	719	630	920	6.74e-110	356
MsaG045863	MtrunA17_Chr1g0151541	60.377	265	105	0	452	716	656	920	3.00e-109	354
MsaG045863	MtrunA17_Chr8g0392871	57.586	290	121	2	440	728	719	1007	6.11e-108	353
MsaG045863	MtrunA17_Chr1g0179331	59.410	271	108	1	448	716	544	814	3.38e-105	341
MsaG045863	MtrunA17_Chr3g0132791	60.526	266	103	1	453	716	647	912	1.52e-104	342

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG045863	AT5G49470.3	58.940	755	264	11	13	728	13	760	861
MsaG045863	AT3G06620.1	56.494	770	284	12	13	738	11	773	843
MsaG045863	AT1G67890.1	57.483	755	270	12	13	728	13	755	825
MsaG045863	AT5G49470.4	57.641	746	262	13	13	728	13	734	803
MsaG045863	AT3G06630.2	57.123	723	273	11	8	721	2	696	794
MsaG045863	AT3G06640.2	53.815	747	274	9	9	728	13	715	776
MsaG045863	AT3G06640.3	53.815	747	274	9	9	728	13	715	776
MsaG045863	AT1G67890.3	57.064	722	259	12	13	695	13	722	776
MsaG045863	AT1G67890.2	57.064	722	259	12	13	695	13	722	776
MsaG045863	AT3G06640.1	53.826	745	273	9	9	726	13	713	773

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Find 169 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGTTGATCCAGGGT+GGG	0.605465	8:-77679224	MsaT045863.1:CDS
AAACTTCCATCATCATAAAA+AGG	0.326517	8:+77683807	None:intergenic
AAAGCATACCTCTTGTCTGA+AGG	0.590727	8:+77682149	None:intergenic
AAAGTATGTCATTCAGTTCC+AGG	0.390028	8:-77678587	MsaT045863.1:CDS
AAATCTCTATGGACAATCGG+CGG	0.621318	8:+77680139	None:intergenic
AAATGATCGAGAAGAATCAG+AGG	0.604547	8:-77683195	MsaT045863.1:CDS
AACATCATCATCATCGTCAA+AGG	0.562509	8:-77684789	MsaT045863.1:CDS
AACATTATAGGAGGAAGAAC+GGG	0.491819	8:+77683028	None:intergenic
AACCAGAAGATTATTTCTTC+TGG	0.294407	8:-77683113	MsaT045863.1:CDS
AACCTCATGACAGTTCTGGT+TGG	0.557884	8:-77673093	MsaT045863.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	77673032	77684929	77673032	ID=MsaG045863
Chr8	mRNA	77673032	77684929	77673032	ID=MsaT045863.1;Parent=MsaG045863
Chr8	exon	77673032	77673141	77673032	ID=MsaT045863.1.exon14;Parent=MsaT045863.1
Chr8	CDS	77673032	77673141	77673032	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77678572	77678669	77678572	ID=MsaT045863.1.exon13;Parent=MsaT045863.1
Chr8	CDS	77678572	77678669	77678572	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77679196	77679290	77679196	ID=MsaT045863.1.exon12;Parent=MsaT045863.1
Chr8	CDS	77679196	77679290	77679196	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77679538	77679619	77679538	ID=MsaT045863.1.exon11;Parent=MsaT045863.1
Chr8	CDS	77679538	77679619	77679538	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77679721	77679770	77679721	ID=MsaT045863.1.exon10;Parent=MsaT045863.1
Chr8	CDS	77679721	77679770	77679721	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77679896	77679964	77679896	ID=MsaT045863.1.exon9;Parent=MsaT045863.1
Chr8	CDS	77679896	77679964	77679896	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77680096	77680194	77680096	ID=MsaT045863.1.exon8;Parent=MsaT045863.1
Chr8	CDS	77680096	77680194	77680096	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77680364	77680442	77680364	ID=MsaT045863.1.exon7;Parent=MsaT045863.1
Chr8	CDS	77680364	77680442	77680364	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77680578	77680678	77680578	ID=MsaT045863.1.exon6;Parent=MsaT045863.1
Chr8	CDS	77680578	77680678	77680578	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77682158	77682226	77682158	ID=MsaT045863.1.exon5;Parent=MsaT045863.1
Chr8	CDS	77682158	77682226	77682158	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77682593	77682633	77682593	ID=MsaT045863.1.exon4;Parent=MsaT045863.1
Chr8	CDS	77682593	77682633	77682593	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77682892	77683543	77682892	ID=MsaT045863.1.exon3;Parent=MsaT045863.1
Chr8	CDS	77682892	77683543	77682892	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77683623	77684031	77683623	ID=MsaT045863.1.exon2;Parent=MsaT045863.1
Chr8	CDS	77683623	77684031	77683623	ID=cds.MsaT045863.1;Parent=MsaT045863.1
Chr8	exon	77684589	77684929	77684589	ID=MsaT045863.1.exon1;Parent=MsaT045863.1
Chr8	CDS	77684589	77684929	77684589	ID=cds.MsaT045863.1;Parent=MsaT045863.1

Gene Sequence

>MsaT045863.1

ATGATGGGAAGTGAAGAAAGAGAGAAAGCAGTTGAGAAGAAGATCCAAGAGTTAGAAGAAGGACATGCTTACATGAAACAAGAAATGTCAAAGCTTAAACTTAGTGATGGAAGACAACAACATCATCATCATCGTCAAAGGTCTCACTCTGTGTCACCTCAACGTTCTAGATTAGGTTCTTGGAACAAAGGTTCTTGTTCTTTCAAACACTCTTCACCTCTCAGAAAGGAAACTCATGCTCACGCGCTTGTTAATTTCACTGAAAAACATTATCTCAATATTTTACATTCTTTGGGACATTCTCTTCATATTTTGGATCTTAATTCTCGTATCATTTACTGGAACCGTAGTGCTGAAAATCTATACGGTTATGCAGCAGATGAAGTTTTGGGACAGGATGGGATTGATTTGCTTGTGGACTCTAGGGATTGGGAATTAGCTTGTGATACAGTGAATTGTGTTATGAAGGGAGAGAGATGGAGTGGTCAATTCCTAGTCAAGAACAAGAAAGGAGAAAGGTTTTTAGCTGTAACAACTAATACTCCTTTTTATGATGATGGAAGTTTAGTTGGGATTATCTGTGTGTCGAGTGATTCGCGGCCGTTTCTTGAAATGAGAGCTCCATTCTTTGGTGTAAAGAATGCTGAATCGGATTATGGTATTCGTCGTAGCAGCAGTGTTTCAAATAAACTTGGCTTTGACTCTCAGCAGCCACTACAAACTGCTCTAGCATCTAAAATTTCAAATTTGGCGTCGAAGATGGGTAACAAAGTTAAGTCGAAGATCTGGACGGGAGAAAATAACATGGACCGTGAAGGTGGGAATGGAGAAAGTAAACATTCTGAACTTGGTTTCTCAGAACACAGAGAAGATGCTAATTCAAGCGGAGCTAGCACGCCTAAAGGTGATTTGCCACAGTCCCCTGTTGGTGTATTTTATCGTGTTGAGGAAAAGTTTGAAGCAAAAACTTTGAGAGACTCTGCTGATGAGAGTGAAGGAAAACCTGTTAACAAAAGTTTACCTACTAAGCCTGAAACCTGGATTCAAAAGAAAACATCAACATGGCCATGGAGAACAAATGATCGAGAAGAATCAGAGGCAAGGAACGTTCGTGCTGCTGAGCCGTGGAGGCAGAATGATCAAGAAAATGAGTCAGTTAACCAGAAGATTATTTCTTCTGGCTTGAAGCACGAAAAGCAGGCTGGTGAAAGTAATCGCCCTACTAATAATGAGGCTTCATTATCCCGTTCTTCCTCCTATAATGTTAACAGCACAAGTAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTGGTGCTGTCAGCAGTAAAGTGGACGCAGACAATGATTGCTTTGATTATGAAATTTTGTGGGAGGATTTGACAATTCGAGAACAAATTGGACAGGGTTGTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAGTATTCAGATGATTTGATACTATCCTTCAGACAAGAGGTATCTGTCATGAAAAGACTTCGGCACCCAAATATTCTTCTCTTTATGGGAGCAGTGACTTCACCCCAACGTCTCTGCATTGTGACAGAGTTTCTCCCGCGTGGAAGCTTGTGTCGCTTGTTACACCGAAACACGCCCAAACTTGACTGGAGACGACGAGTTCAGATGGCCTTGGATATTGCGCGAGGCATAAATTATCTTCATCATTATAACCCGCCGATTGTCCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATATCTCACAACTAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCGTCAGATGAGAAGTCTGATGTGTACAGCTTTGGGGTGATATTATGGGAACTCGCGACTGAAAAGATTCCTTGGGATAATCTCAACCCAATGCAGGTAATTGGAGCTGTAGGGTTCATGAATCAGCGTCCAGAAATTCCAAAAGATGTTGATCCAGGGTGGGCTTCTTTAATTGAGATCTGTTGGCACAGTGATCCAACTCGTCGACCAACTTTTCTGGAACTGCTTGAAAGGCTTAGAGAGTTGCAAAAAAAGTATGTCATTCAGTTCCAGGCAGCCCGGTCTGCTAGAGGATACGAGGACGTTATCCGAGATAACCTCATGACAGTTCTGGTTGGGGGTGGTTCCCCATTTTGCATAGAAGGAGGACTTGGCCTCAAACAAGATGACTTTTTGTAA

Protein sequence

>MsaT045863.1

MMGSEEREKAVEKKIQELEEGHAYMKQEMSKLKLSDGRQQHHHHRQRSHSVSPQRSRLGSWNKGSCSFKHSSPLRKETHAHALVNFTEKHYLNILHSLGHSLHILDLNSRIIYWNRSAENLYGYAADEVLGQDGIDLLVDSRDWELACDTVNCVMKGERWSGQFLVKNKKGERFLAVTTNTPFYDDGSLVGIICVSSDSRPFLEMRAPFFGVKNAESDYGIRRSSSVSNKLGFDSQQPLQTALASKISNLASKMGNKVKSKIWTGENNMDREGGNGESKHSELGFSEHREDANSSGASTPKGDLPQSPVGVFYRVEEKFEAKTLRDSADESEGKPVNKSLPTKPETWIQKKTSTWPWRTNDREESEARNVRAAEPWRQNDQENESVNQKIISSGLKHEKQAGESNRPTNNEASLSRSSSYNVNSTSSASSCGSAGSGAVSSKVDADNDCFDYEILWEDLTIREQIGQGCCGTVYHALWYGSDVAVKVFSKQEYSDDLILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVQMALDIARGINYLHHYNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNPMQVIGAVGFMNQRPEIPKDVDPGWASLIEICWHSDPTRRPTFLELLERLRELQKKYVIQFQAARSARGYEDVIRDNLMTVLVGGGSPFCIEGGLGLKQDDFL*