AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG045871


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045871 MtrunA17_Chr4g0068541 90.047 422 34 4 1 421 5 419 0.0 626
MsaG045871 MtrunA17_Chr2g0294231 39.663 416 163 15 8 410 26 366 2.70e-47 166
MsaG045871 MtrunA17_Chr1g0194481 44.223 251 90 10 38 285 31 234 2.20e-42 152
MsaG045871 MtrunA17_Chr7g0270191 46.471 170 55 4 109 275 74 210 1.88e-38 140
MsaG045871 MtrunA17_Chr5g0418781 58.491 106 41 1 184 289 98 200 2.05e-35 132
MsaG045871 MtrunA17_Chr5g0443131 67.949 78 25 0 197 274 144 221 4.00e-33 126
MsaG045871 MtrunA17_Chr4g0051881 65.385 78 27 0 197 274 165 242 5.10e-31 121
MsaG045871 MtrunA17_Chr8g0335811 62.651 83 31 0 184 266 128 210 3.63e-30 116
MsaG045871 MtrunA17_Chr3g0129321 63.514 74 27 0 197 270 105 178 1.22e-28 111
MsaG045871 MtrunA17_Chr1g0150801 64.474 76 27 0 191 266 83 158 1.46e-28 110
MsaG045871 MtrunA17_Chr3g0129361 64.865 74 26 0 193 266 127 200 1.72e-28 111
MsaG045871 MtrunA17_Chr3g0106491 41.176 136 63 1 144 279 316 434 2.88e-27 113
MsaG045871 MtrunA17_Chr3g0106491 55.738 61 26 1 210 270 198 257 5.05e-15 77.0
MsaG045871 MtrunA17_Chr8g0383351 62.667 75 27 1 193 266 142 216 3.78e-27 108
MsaG045871 MtrunA17_Chr7g0224801 65.672 67 23 0 200 266 83 149 6.62e-27 105
MsaG045871 MtrunA17_Chr4g0042831 44.167 120 60 2 150 269 225 337 2.90e-26 109
MsaG045871 MtrunA17_Chr4g0042831 55.000 60 27 0 210 269 145 204 4.53e-17 82.4
MsaG045871 MtrunA17_Chr8g0383251 35.057 174 107 3 112 280 6 178 4.14e-26 103
MsaG045871 MtrunA17_Chr3g0101131 37.500 168 95 3 145 302 341 508 4.54e-26 110
MsaG045871 MtrunA17_Chr3g0101131 54.930 71 31 1 210 280 243 312 1.07e-15 79.3
MsaG045871 MtrunA17_Chr5g0432161 36.478 159 84 1 112 270 340 481 6.14e-26 110
MsaG045871 MtrunA17_Chr5g0432161 53.333 60 27 1 210 269 244 302 6.77e-14 73.6
MsaG045871 MtrunA17_Chr8g0386241 47.475 99 46 1 174 266 61 159 1.53e-25 102
MsaG045871 MtrunA17_Chr7g0249301 55.000 80 36 0 191 270 273 352 6.20e-25 105
MsaG045871 MtrunA17_Chr7g0249301 54.098 61 27 1 209 269 61 120 2.58e-15 77.0
MsaG045871 MtrunA17_Chr3g0079691 56.250 80 35 0 191 270 476 555 7.02e-25 107
MsaG045871 MtrunA17_Chr3g0079691 50.725 69 33 1 210 278 280 347 5.47e-16 80.1
MsaG045871 MtrunA17_Chr5g0445311 43.548 124 58 2 153 270 307 424 7.18e-25 107
MsaG045871 MtrunA17_Chr5g0445311 60.000 60 23 1 210 269 200 258 1.48e-15 78.6
MsaG045871 MtrunA17_Chr5g0418191 48.837 86 44 0 185 270 295 380 9.67e-25 105
MsaG045871 MtrunA17_Chr5g0418191 61.667 60 22 1 210 269 151 209 1.11e-17 84.7
MsaG045871 MtrunA17_Chr7g0249311 38.000 150 80 3 134 270 303 452 1.33e-24 106
MsaG045871 MtrunA17_Chr7g0249311 43.434 99 51 3 210 308 179 272 7.80e-17 82.8
MsaG045871 MtrunA17_Chr7g0248721 45.038 131 41 5 149 271 102 209 1.56e-24 100
MsaG045871 MtrunA17_Chr7g0218081 56.757 74 32 0 197 270 397 470 1.78e-24 105
MsaG045871 MtrunA17_Chr7g0218081 60.000 60 23 1 210 269 228 286 8.22e-17 82.4
MsaG045871 MtrunA17_Chr4g0004911 37.241 145 84 2 126 270 259 396 7.61e-24 103
MsaG045871 MtrunA17_Chr4g0004911 51.471 68 32 1 210 276 184 251 2.35e-15 77.8
MsaG045871 MtrunA17_Chr7g0243891 48.315 89 46 0 191 279 355 443 1.76e-23 102
MsaG045871 MtrunA17_Chr7g0243891 50.746 67 32 1 210 276 216 281 4.56e-14 73.9
MsaG045871 MtrunA17_Chr7g0263531 41.463 123 63 1 148 270 308 421 4.26e-23 100
MsaG045871 MtrunA17_Chr7g0263531 36.975 119 52 3 211 327 190 287 7.98e-16 79.0
MsaG045871 MtrunA17_Chr2g0322391 48.718 78 39 1 193 269 332 409 2.20e-21 96.7
MsaG045871 MtrunA17_Chr4g0075201 39.098 133 72 5 144 269 197 327 2.23e-21 96.3
MsaG045871 MtrunA17_Chr3g0099641 47.436 78 40 1 193 269 234 311 3.68e-21 95.5
MsaG045871 MtrunA17_Chr2g0288871 48.718 78 39 1 193 269 288 365 1.52e-20 94.0
MsaG045871 MtrunA17_Chr5g0447701 50.667 75 37 0 196 270 238 312 2.67e-20 92.0
MsaG045871 MtrunA17_Chr5g0447701 52.542 59 27 1 211 269 93 150 9.29e-12 66.2
MsaG045871 MtrunA17_Chr4g0060271 40.741 108 50 2 177 270 209 316 3.06e-20 93.2
MsaG045871 MtrunA17_Chr2g0302391 32.663 199 94 9 194 364 195 381 3.52e-20 92.0
MsaG045871 MtrunA17_Chr1g0188941 47.368 76 40 0 194 269 35 110 3.74e-20 85.5
MsaG045871 MtrunA17_Chr7g0270831 36.000 150 68 4 121 269 154 276 5.05e-20 91.7
MsaG045871 MtrunA17_Chr7g0238921 61.017 59 23 0 210 268 124 182 7.54e-20 89.7
MsaG045871 MtrunA17_Chr6g0485431 44.872 78 42 1 197 273 141 218 1.01e-19 90.1
MsaG045871 MtrunA17_Chr7g0216891 40.164 122 57 5 150 266 166 276 1.58e-19 90.9
MsaG045871 MtrunA17_Chr1g0147881 39.583 96 57 1 186 280 238 333 1.60e-19 89.4
MsaG045871 MtrunA17_Chr4g0051181 48.718 78 39 1 194 270 227 304 2.09e-19 90.1
MsaG045871 MtrunA17_Chr2g0333851 49.383 81 38 2 192 269 149 229 2.90e-19 88.2
MsaG045871 MtrunA17_Chr7g0270051 34.667 150 71 5 182 304 16 165 3.33e-19 87.0
MsaG045871 MtrunA17_Chr1g0189391 48.684 76 37 2 197 271 84 158 1.09e-18 86.7
MsaG045871 MtrunA17_Chr4g0074001 40.650 123 54 4 148 270 316 419 2.12e-18 87.4
MsaG045871 MtrunA17_Chr4g0001361 43.820 89 47 3 184 269 134 222 3.69e-18 84.7
MsaG045871 MtrunA17_Chr4g0025051 46.667 75 39 1 196 269 321 395 9.82e-18 85.5
MsaG045871 MtrunA17_Chr4g0025061 47.436 78 40 1 193 269 343 420 2.25e-17 84.3
MsaG045871 MtrunA17_Chr3g0139021 41.379 87 50 1 181 266 285 371 3.07e-17 83.2
MsaG045871 MtrunA17_Chr4g0053281 43.373 83 43 2 188 266 241 323 6.36e-17 81.6
MsaG045871 MtrunA17_Chr3g0136961 48.333 60 30 1 208 266 136 195 8.07e-17 80.5
MsaG045871 MtrunA17_Chr5g0401821 43.011 93 51 2 186 277 175 266 8.70e-17 80.1
MsaG045871 MtrunA17_Chr1g0150281 46.575 73 36 2 197 266 125 197 1.01e-16 80.1
MsaG045871 MtrunA17_Chr4g0071521 38.462 91 55 1 186 275 221 311 1.32e-16 80.1
MsaG045871 MtrunA17_Chr8g0379461 47.541 61 31 1 211 270 77 137 3.63e-16 77.8
MsaG045871 MtrunA17_Chr7g0228941 49.153 59 29 1 211 268 53 111 8.01e-16 73.6
MsaG045871 MtrunA17_Chr8g0387501 48.387 62 31 1 209 269 128 189 9.53e-16 77.0
MsaG045871 MtrunA17_Chr8g0348311 48.333 60 30 1 211 269 156 215 1.16e-15 77.8
MsaG045871 MtrunA17_Chr2g0319961 35.294 102 59 2 176 270 40 141 1.42e-15 76.3
MsaG045871 MtrunA17_Chr1g0150271 41.772 79 43 2 194 269 83 161 1.62e-15 76.3
MsaG045871 MtrunA17_Chr2g0284321 46.667 60 31 1 211 269 36 95 1.87e-15 75.1
MsaG045871 MtrunA17_Chr1g0184691 40.000 80 47 1 188 266 271 350 3.53e-15 76.6
MsaG045871 MtrunA17_Chr1g0202461 33.333 99 64 2 173 269 223 321 5.83e-15 76.3
MsaG045871 MtrunA17_Chr2g0289181 45.000 60 32 1 211 269 15 74 8.67e-15 73.6
MsaG045871 MtrunA17_Chr2g0293481 45.902 61 32 1 211 270 268 328 1.32e-14 75.5
MsaG045871 MtrunA17_Chr7g0248691 37.209 86 48 2 186 270 135 215 1.77e-14 73.9
MsaG045871 MtrunA17_Chr5g0432071 48.333 60 30 1 210 269 104 162 3.09e-13 68.6
MsaG045871 MtrunA17_Chr5g0447711 41.667 72 42 0 198 269 218 289 5.00e-13 69.7
MsaG045871 MtrunA17_Chr4g0024391 40.000 70 41 1 193 261 212 281 6.33e-13 70.5
MsaG045871 MtrunA17_Chr7g0275531 40.000 85 46 2 186 265 92 176 1.16e-12 68.6
MsaG045871 MtrunA17_Chr8g0347251 45.000 60 30 1 209 265 135 194 2.01e-12 68.2
MsaG045871 MtrunA17_Chr2g0315361 39.604 101 51 3 173 265 108 206 2.05e-12 67.8
MsaG045871 MtrunA17_Chr8g0387981 37.234 94 55 2 175 265 98 190 2.18e-12 68.2
MsaG045871 MtrunA17_Chr3g0126391 48.333 60 28 1 209 265 132 191 2.42e-12 67.8
MsaG045871 MtrunA17_Chr2g0315381 46.667 60 29 1 209 265 143 202 4.23e-12 66.6
MsaG045871 MtrunA17_Chr5g0419241 52.174 46 22 0 193 238 60 105 1.22e-11 61.2
MsaG045871 MtrunA17_Chr7g0244981 44.068 59 30 1 210 265 122 180 3.10e-11 63.9
MsaG045871 MtrunA17_Chr8g0334541 31.193 109 71 2 160 265 54 161 7.19e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045871 AT2G47260.1 64.545 110 39 0 176 285 140 249 8.28e-43 153
MsaG045871 AT4G18170.1 48.571 175 76 5 105 274 71 236 2.18e-39 144
MsaG045871 AT1G69310.4 69.048 84 26 0 183 266 120 203 1.83e-35 132
MsaG045871 AT1G69310.2 69.048 84 26 0 183 266 120 203 1.83e-35 132
MsaG045871 AT1G69310.1 69.048 84 26 0 183 266 120 203 1.83e-35 132
MsaG045871 AT5G49520.1 39.914 233 95 6 180 410 191 380 1.85e-35 135
MsaG045871 AT1G29860.1 65.854 82 28 0 194 275 120 201 1.03e-33 127
MsaG045871 AT3G62340.1 65.116 86 29 1 187 272 96 180 1.59e-33 127
MsaG045871 AT5G46350.1 45.139 144 75 1 132 275 109 248 4.15e-32 124
MsaG045871 AT2G44745.1 61.176 85 33 0 183 267 118 202 4.07e-31 119
MsaG045871 AT1G69310.3 64.286 84 26 1 183 266 120 199 5.83e-30 117
MsaG045871 AT2G46130.1 54.945 91 33 1 189 271 9 99 3.19e-29 110
MsaG045871 AT4G39410.1 63.529 85 30 1 183 266 195 279 4.67e-29 115
MsaG045871 AT3G01970.1 63.380 71 26 0 196 266 51 121 5.01e-28 108
MsaG045871 AT5G13080.1 62.857 70 26 0 197 266 54 123 1.70e-27 107
MsaG045871 AT1G64000.1 54.255 94 35 1 186 271 90 183 3.46e-27 107
MsaG045871 AT5G41570.1 50.000 102 50 1 175 276 64 164 1.13e-26 105
MsaG045871 AT5G26170.1 60.274 73 29 0 196 268 99 171 4.04e-26 104
MsaG045871 AT5G07100.2 48.958 96 49 0 188 283 119 214 5.45e-26 105
MsaG045871 AT5G07100.2 50.000 60 30 0 210 269 24 83 8.10e-14 70.9
MsaG045871 AT5G07100.4 48.958 96 49 0 188 283 119 214 5.45e-26 105
MsaG045871 AT5G07100.4 50.000 60 30 0 210 269 24 83 8.10e-14 70.9
MsaG045871 AT5G07100.5 48.958 96 49 0 188 283 119 214 5.45e-26 105
MsaG045871 AT5G07100.5 50.000 60 30 0 210 269 24 83 8.10e-14 70.9
MsaG045871 AT5G07100.3 48.958 96 49 0 188 283 119 214 5.45e-26 105
MsaG045871 AT5G07100.3 50.000 60 30 0 210 269 24 83 8.10e-14 70.9
MsaG045871 AT4G26640.5 52.747 91 43 0 191 281 186 276 7.16e-26 108
MsaG045871 AT4G26640.5 55.714 70 30 1 210 279 35 103 4.21e-16 80.1
MsaG045871 AT4G26640.6 52.747 91 43 0 191 281 186 276 7.16e-26 108
MsaG045871 AT4G26640.6 55.714 70 30 1 210 279 35 103 4.21e-16 80.1
MsaG045871 AT4G26640.4 52.747 91 43 0 191 281 186 276 7.16e-26 108
MsaG045871 AT4G26640.4 55.714 70 30 1 210 279 35 103 4.21e-16 80.1
MsaG045871 AT4G26640.3 52.747 91 43 0 191 281 186 276 7.16e-26 108
MsaG045871 AT4G26640.3 55.714 70 30 1 210 279 35 103 4.21e-16 80.1
MsaG045871 AT2G03340.1 36.686 169 79 3 130 298 353 493 1.32e-25 109
MsaG045871 AT2G03340.1 60.000 60 23 1 210 269 250 308 1.19e-16 82.4
MsaG045871 AT4G26640.1 52.747 91 43 0 191 281 290 380 2.08e-25 108
MsaG045871 AT4G26640.1 55.714 70 30 1 210 279 139 207 7.06e-16 79.7
MsaG045871 AT5G07100.1 48.958 96 49 0 188 283 212 307 2.22e-25 105
MsaG045871 AT5G07100.1 50.000 60 30 0 210 269 117 176 1.37e-13 71.6
MsaG045871 AT4G26640.7 52.747 91 43 0 191 281 322 412 2.39e-25 108
MsaG045871 AT4G26640.7 55.714 70 30 1 210 279 171 239 7.46e-16 79.7
MsaG045871 AT2G21900.1 46.535 101 45 2 175 272 77 171 2.70e-25 102
MsaG045871 AT4G26640.2 52.747 91 43 0 191 281 362 452 3.15e-25 108
MsaG045871 AT4G26640.2 55.714 70 30 1 210 279 211 279 8.22e-16 79.7
MsaG045871 AT1G13960.2 58.904 73 30 0 197 269 243 315 3.23e-25 106
MsaG045871 AT1G13960.2 55.224 67 29 1 210 276 76 141 6.66e-17 82.0
MsaG045871 AT5G56270.1 57.500 80 34 0 191 270 468 547 3.38e-25 108
MsaG045871 AT5G56270.1 50.000 70 34 1 210 279 273 341 6.56e-16 80.5
MsaG045871 AT4G26440.1 55.294 85 38 0 194 278 356 440 3.86e-25 108
MsaG045871 AT4G26440.1 52.174 69 32 1 210 278 178 245 5.02e-16 80.5
MsaG045871 AT1G13960.1 58.904 73 30 0 197 269 396 468 7.75e-25 107
MsaG045871 AT1G13960.1 55.224 67 29 1 210 276 229 294 9.83e-17 82.4
MsaG045871 AT2G38470.1 55.000 80 36 0 191 270 343 422 9.61e-25 106
MsaG045871 AT2G38470.1 53.333 60 27 1 210 269 184 242 2.97e-13 72.0
MsaG045871 AT2G30250.1 56.471 85 37 0 191 275 309 393 9.65e-25 105
MsaG045871 AT2G30250.1 44.444 72 39 1 210 281 166 236 3.18e-12 68.2
MsaG045871 AT3G01080.2 33.113 151 80 2 140 269 253 403 5.55e-24 103
MsaG045871 AT3G01080.2 58.333 60 24 1 210 269 205 263 2.38e-17 84.3
MsaG045871 AT2G46130.2 50.549 91 33 2 189 271 9 95 6.58e-24 95.9
MsaG045871 AT3G01080.1 56.164 73 32 0 197 269 293 365 1.85e-23 102
MsaG045871 AT3G01080.1 58.333 60 24 1 210 269 167 225 2.46e-17 84.0
MsaG045871 AT5G64810.1 52.778 72 34 0 197 268 97 168 3.49e-23 96.7
MsaG045871 AT2G04880.2 54.054 74 34 0 196 269 269 342 4.67e-23 101
MsaG045871 AT2G04880.2 54.839 62 27 1 209 270 110 170 3.98e-15 77.4
MsaG045871 AT2G04880.1 54.054 74 34 0 196 269 293 366 5.33e-23 101
MsaG045871 AT2G04880.1 54.839 62 27 1 209 270 110 170 4.34e-15 77.4
MsaG045871 AT4G04450.2 48.235 85 42 2 193 275 181 265 6.03e-21 94.7
MsaG045871 AT1G55600.1 53.425 73 34 0 197 269 294 366 7.80e-21 94.7
MsaG045871 AT4G04450.1 48.235 85 42 2 193 275 275 359 1.50e-20 94.4
MsaG045871 AT4G22070.4 50.000 78 38 1 193 269 280 357 1.74e-20 94.0
MsaG045871 AT4G22070.3 50.000 78 38 1 193 269 280 357 1.74e-20 94.0
MsaG045871 AT4G22070.2 50.000 78 38 1 193 269 280 357 1.74e-20 94.0
MsaG045871 AT4G22070.1 50.000 78 38 1 193 269 280 357 1.74e-20 94.0
MsaG045871 AT1G62300.1 50.000 78 38 1 193 269 295 372 2.05e-20 94.0
MsaG045871 AT2G37260.2 40.367 109 60 2 164 269 223 329 2.09e-20 92.4
MsaG045871 AT2G37260.2 50.000 80 34 3 211 288 84 159 4.10e-15 76.6
MsaG045871 AT2G37260.3 40.367 109 60 2 164 269 225 331 2.14e-20 92.4
MsaG045871 AT2G37260.3 50.000 80 34 3 211 288 86 161 3.94e-15 76.6
MsaG045871 AT2G37260.1 40.367 109 60 2 164 269 305 411 2.72e-20 92.8
MsaG045871 AT2G37260.1 50.000 80 34 3 211 288 166 241 6.06e-15 76.6
MsaG045871 AT5G15130.2 48.101 79 40 1 193 270 168 246 4.51e-20 92.8
MsaG045871 AT5G15130.1 48.101 79 40 1 193 270 210 288 5.08e-20 92.8
MsaG045871 AT4G01720.1 44.000 100 43 2 171 269 212 299 8.03e-20 92.0
MsaG045871 AT1G68150.1 48.718 78 39 1 194 270 219 296 1.35e-19 90.1
MsaG045871 AT4G30935.1 38.356 146 70 4 126 270 265 391 7.94e-19 88.6
MsaG045871 AT1G18860.1 46.154 78 41 1 193 269 222 299 1.35e-18 88.2
MsaG045871 AT5G43290.1 50.000 78 37 2 197 272 100 177 1.64e-18 85.5
MsaG045871 AT4G31800.2 53.226 62 28 1 209 269 110 171 1.93e-18 84.7
MsaG045871 AT1G80840.1 43.000 100 49 4 175 269 110 206 2.66e-18 85.5
MsaG045871 AT4G31800.1 53.226 62 28 1 209 269 175 236 3.71e-18 85.1
MsaG045871 AT2G23320.1 47.561 82 42 1 186 266 216 297 5.76e-18 84.7
MsaG045871 AT4G31550.2 45.122 82 44 1 186 266 221 302 7.63e-18 84.3
MsaG045871 AT3G01080.3 58.333 60 24 1 210 269 205 263 9.68e-18 84.3
MsaG045871 AT2G24570.1 45.122 82 44 1 186 266 219 300 1.47e-17 83.6
MsaG045871 AT2G25000.2 51.613 62 29 1 209 269 102 163 2.62e-17 81.3
MsaG045871 AT2G25000.4 51.613 62 29 1 209 269 102 163 2.62e-17 81.3
MsaG045871 AT2G30590.1 42.683 82 46 1 186 266 289 370 2.82e-17 83.6
MsaG045871 AT2G25000.3 51.613 62 29 1 209 269 124 185 3.77e-17 81.3
MsaG045871 AT4G31550.1 43.902 82 45 1 186 266 222 303 4.25e-17 82.4
MsaG045871 AT5G28650.1 42.683 82 46 1 186 266 238 319 5.67e-17 82.0
MsaG045871 AT2G25000.1 51.613 62 29 1 209 269 145 206 6.16e-17 80.9
MsaG045871 AT1G69810.2 35.088 114 64 4 167 278 108 213 1.00e-16 81.3
MsaG045871 AT1G69810.1 35.088 114 64 4 167 278 166 271 1.47e-16 81.3
MsaG045871 AT3G04670.1 42.683 82 46 1 186 266 238 319 1.86e-16 80.5
MsaG045871 AT4G24240.1 41.463 82 47 1 186 266 257 338 4.72e-16 79.3
MsaG045871 AT5G52830.1 41.860 86 45 3 186 270 145 226 5.01e-16 79.3
MsaG045871 AT1G30650.1 39.785 93 50 3 183 270 187 278 7.61e-16 79.3
MsaG045871 AT1G29280.1 47.541 61 31 1 211 270 75 135 1.55e-15 76.6
MsaG045871 AT3G58710.2 40.217 92 48 2 185 269 39 130 1.94e-15 76.6
MsaG045871 AT4G01250.1 38.636 88 43 3 187 269 107 188 9.56e-15 75.1
MsaG045871 AT3G58710.1 32.520 123 76 2 154 269 9 131 9.62e-15 74.7
MsaG045871 AT2G34830.1 37.634 93 52 3 183 270 185 276 9.79e-15 76.3
MsaG045871 AT2G34830.2 37.634 93 52 3 183 270 194 285 1.09e-14 75.9
MsaG045871 AT5G45050.4 40.449 89 48 2 184 271 1019 1103 1.29e-14 76.6
MsaG045871 AT5G45050.2 40.449 89 48 2 184 271 1130 1214 1.30e-14 76.6
MsaG045871 AT5G45050.1 40.449 89 48 2 184 271 1158 1242 1.39e-14 76.6
MsaG045871 AT5G24110.1 36.220 127 70 5 174 295 77 197 5.35e-14 72.8
MsaG045871 AT4G23550.1 44.444 63 34 1 209 270 139 201 3.09e-13 70.5
MsaG045871 AT4G11070.2 38.202 89 46 3 180 265 85 167 2.62e-12 67.4
MsaG045871 AT4G23810.1 35.185 108 57 3 165 265 115 216 3.18e-12 67.8
MsaG045871 AT4G11070.1 38.202 89 46 3 180 265 117 199 3.35e-12 67.4
MsaG045871 AT1G66560.1 45.763 59 29 1 210 265 103 161 3.92e-12 66.6
MsaG045871 AT2G46400.1 37.079 89 53 1 180 265 74 162 4.39e-12 67.0
MsaG045871 AT4G12020.1 43.678 87 37 3 148 230 583 661 4.83e-12 68.9
MsaG045871 AT4G12020.1 46.774 62 32 1 208 269 466 526 1.17e-11 67.4
MsaG045871 AT4G12020.9 43.678 87 37 3 148 230 583 661 4.83e-12 68.9
MsaG045871 AT4G12020.9 46.774 62 32 1 208 269 466 526 1.17e-11 67.4
MsaG045871 AT4G12020.3 43.678 87 37 3 148 230 583 661 4.86e-12 68.9
MsaG045871 AT4G12020.3 46.774 62 32 1 208 269 466 526 1.02e-11 67.8
MsaG045871 AT4G12020.6 43.678 87 37 3 148 230 583 661 4.90e-12 68.6
MsaG045871 AT4G12020.6 46.774 62 32 1 208 269 466 526 1.08e-11 67.8
MsaG045871 AT4G12020.8 43.678 87 37 3 148 230 583 661 4.90e-12 68.6
MsaG045871 AT4G12020.8 46.774 62 32 1 208 269 466 526 1.08e-11 67.8
MsaG045871 AT4G12020.2 43.678 87 37 3 148 230 583 661 4.95e-12 68.6
MsaG045871 AT4G12020.2 46.774 62 32 1 208 269 466 526 1.10e-11 67.8
MsaG045871 AT4G12020.7 43.678 87 37 3 148 230 583 661 5.13e-12 68.6
MsaG045871 AT4G12020.7 46.774 62 32 1 208 269 466 526 1.14e-11 67.4
MsaG045871 AT4G12020.10 43.678 87 37 3 148 230 583 661 5.35e-12 68.6
MsaG045871 AT4G12020.10 46.774 62 32 1 208 269 466 526 1.05e-11 67.8
MsaG045871 AT4G12020.11 43.678 87 37 3 148 230 583 661 5.76e-12 68.6
MsaG045871 AT4G12020.11 46.774 62 32 1 208 269 466 526 1.41e-11 67.0
MsaG045871 AT4G12020.4 43.678 87 37 3 148 230 583 661 5.80e-12 68.6
MsaG045871 AT4G12020.4 46.774 62 32 1 208 269 466 526 1.09e-11 67.8
MsaG045871 AT4G12020.5 43.678 87 37 3 148 230 516 594 5.97e-12 68.6
MsaG045871 AT4G12020.5 46.774 62 32 1 208 269 399 459 1.22e-11 67.4
MsaG045871 AT1G66600.1 37.500 88 50 2 183 265 74 161 6.03e-12 65.9
MsaG045871 AT5G45260.1 37.500 96 53 3 179 269 1177 1270 2.47e-11 66.6
MsaG045871 AT5G01900.1 34.234 111 64 3 184 289 82 188 3.20e-11 63.9
MsaG045871 AT3G56400.1 27.322 183 97 4 94 265 21 178 4.47e-11 63.9
MsaG045871 AT2G40750.1 44.068 59 30 1 210 265 152 210 9.32e-11 63.5

Find 105 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTTCATATTCATTATT+TGG 0.142870 8:-77792578 None:intergenic
TTCTTGTTCTTCTTCTTCTT+TGG 0.208653 8:-77791560 None:intergenic
TTTCCCTTGTTCTTCTTGTT+TGG 0.224161 8:-77790707 None:intergenic
GTTCAAAATCAAGACAATTA+TGG 0.244462 8:+77792442 MsaT045871.1:CDS
ATGAACTCTTCAACATCTTT+TGG 0.249819 8:+77792412 MsaT045871.1:CDS
GGGATCATGCCTGATACTTC+TGG 0.288980 8:+77792151 MsaT045871.1:CDS
TCTTCTGCTTCATCTCCTTC+AGG 0.297610 8:-77791124 None:intergenic
CACCCAGCTGCCTCCTTTAC+CGG 0.298102 8:+77790952 MsaT045871.1:CDS
CAACAATCTTCTTCCTTTGC+TGG 0.300661 8:+77790818 MsaT045871.1:CDS
GGTTATAGGTGGCGCAAATA+TGG 0.310546 8:+77791641 MsaT045871.1:CDS
GATGTTGGTGGACCTGTTCT+TGG 0.334569 8:-77792177 None:intergenic
GTCTGCAACAACAGCTTCAT+TGG 0.352883 8:-77791053 None:intergenic
GTATGTATATACCTGGGAAA+TGG 0.359230 8:-77791686 None:intergenic
GAGGAACAATGGACTTCTTC+AGG 0.361888 8:+77792519 MsaT045871.1:CDS
CTTCTTCTACTTTATTCGAT+TGG 0.383790 8:+77790879 MsaT045871.1:CDS
ATCACTTGGATGATGGTTAT+AGG 0.391942 8:+77791627 MsaT045871.1:CDS
TACTTCTGGTTTCCAAGAAC+AGG 0.411828 8:+77792165 MsaT045871.1:CDS
TCTTGGAAACCAGAAGTATC+AGG 0.414512 8:-77792160 None:intergenic
TGTTGAAGGAGTTGTTATAA+TGG 0.415426 8:-77792348 None:intergenic
GATGACAAATACTAATGATA+TGG 0.419528 8:+77792495 MsaT045871.1:CDS
ACAACAATATCAAAGATTTC+AGG 0.427809 8:+77792264 MsaT045871.1:CDS
TTAGCAGCACGCAATAGAAC+CGG 0.432507 8:-77792124 None:intergenic
CCAGCTCCTCCCATCTCCAT+TGG 0.441565 8:-77792553 None:intergenic
CTATTGCGTGCTGCTAACCT+TGG 0.442428 8:+77792130 MsaT045871.1:CDS
TGAAGAAATTGAAGAAGAAA+CGG 0.446413 8:-77791026 None:intergenic
GAAGAGAAAGATGAAGATGA+TGG 0.447085 8:+77791142 MsaT045871.1:CDS
GCCGGGGACTGTACCGGTAA+AGG 0.449845 8:-77790965 None:intergenic
TCAGGATATGATTGCTCCAA+TGG 0.449887 8:+77792537 MsaT045871.1:CDS
AACAAGAAGAACAAGGGAAA+GGG 0.454015 8:+77790710 MsaT045871.1:CDS
TATTGCGTGCTGCTAACCTT+GGG 0.464715 8:+77792131 MsaT045871.1:CDS
GTTGTTGGTAGTTCTGTCCT+TGG 0.468592 8:+77792217 MsaT045871.1:CDS
AGGAGGCAGCTGGGTGGTGA+AGG 0.469762 8:-77790945 None:intergenic
TCCTTTACCGGTACAGTCCC+CGG 0.470396 8:+77790964 MsaT045871.1:CDS
CCAATGGAGATGGGAGGAGC+TGG 0.477280 8:+77792553 MsaT045871.1:CDS
GAAGAAGCGTATTGAGCGTT+CGG 0.479281 8:+77792045 MsaT045871.1:CDS
CAGCTGGGTGGTGAAGGTGG+TGG 0.481535 8:-77790939 None:intergenic
GATGGTAAAGCAGGTGAGAA+AGG 0.482180 8:-77790752 None:intergenic
ATTGAAGAAGAAACGGAGAC+AGG 0.485157 8:-77791019 None:intergenic
TGGGTGGTGAAGGTGGTGGA+AGG 0.485262 8:-77790935 None:intergenic
AACACAACTAGCGGTGTTGT+TGG 0.487241 8:+77792202 MsaT045871.1:CDS
GTCTTGAAAGTAACTCTGGC+TGG 0.489085 8:-77791590 None:intergenic
AGGCAGCTGGGTGGTGAAGG+TGG 0.493908 8:-77790942 None:intergenic
TATGTATATACCTGGGAAAT+GGG 0.497210 8:-77791685 None:intergenic
GTGGTGAAGGTGGTGGAAGG+TGG 0.497652 8:-77790932 None:intergenic
GCAATAGAACCGGGGATAGG+TGG 0.499548 8:-77792114 None:intergenic
CGCTAGTTGTGTTGTGATGT+TGG 0.499668 8:-77792192 None:intergenic
TCAAGACCTCAGACGCGGCC+GGG 0.504762 8:-77790982 None:intergenic
CAAAAGTGGAGAAATGTTGA+AGG 0.511250 8:-77792362 None:intergenic
GACGCGGCCGGGGACTGTAC+CGG 0.513396 8:-77790971 None:intergenic
GAAACGGAGACAGGGGTGGC+CGG 0.514502 8:-77791010 None:intergenic
TTCAAGACCTCAGACGCGGC+CGG 0.517112 8:-77790983 None:intergenic
TGCTGACATGTCAGTATCAA+TGG 0.518443 8:-77790909 None:intergenic
TATGATTGCTCCAATGGAGA+TGG 0.522436 8:+77792543 MsaT045871.1:CDS
GTCTGAGGTCTTGAATAATC+CGG 0.530333 8:+77790991 MsaT045871.1:CDS
GTACCGGTAAAGGAGGCAGC+TGG 0.531164 8:-77790955 None:intergenic
GGTGTGTTGACCTTCATAGC+TGG 0.534430 8:-77792092 None:intergenic
TAGCAGCACGCAATAGAACC+GGG 0.537381 8:-77792123 None:intergenic
ATCGTGCTAACCAGCTATGA+AGG 0.539477 8:+77792082 MsaT045871.1:CDS
AAACAGCGATGTTGATCACT+TGG 0.539987 8:+77791613 MsaT045871.1:CDS
TGGCTATTATATAACAAAGA+TGG 0.540939 8:-77792328 None:intergenic
CAAGACCTCAGACGCGGCCG+GGG 0.541690 8:-77790981 None:intergenic
GTTTGTCTTGAAAGTAACTC+TGG 0.542910 8:-77791594 None:intergenic
TTGAAGAAGAAACGGAGACA+GGG 0.550922 8:-77791018 None:intergenic
CACAGCTCGCGGCGGTGCAA+CGG 0.551216 8:-77792018 None:intergenic
AATCAAGACAATTATGGTGG+AGG 0.551997 8:+77792448 MsaT045871.1:CDS
GAGTTAACAACATTCAAAAG+TGG 0.557077 8:-77792376 None:intergenic
ACAGTCCCCGGCCGCGTCTG+AGG 0.558088 8:+77790976 MsaT045871.1:CDS
ACATCGCAAATTCGTTTCCA+AGG 0.558936 8:-77792234 None:intergenic
GATGTTGATCACTTGGATGA+TGG 0.561173 8:+77791620 MsaT045871.1:CDS
ATGGTAAAGCAGGTGAGAAA+GGG 0.570989 8:-77790751 None:intergenic
AATGATATGGTGAGGAACAA+TGG 0.574084 8:+77792508 MsaT045871.1:CDS
TACCGGTAAAGGAGGCAGCT+GGG 0.581455 8:-77790954 None:intergenic
ATGATTGCTCCAATGGAGAT+GGG 0.584840 8:+77792544 MsaT045871.1:CDS
AAACAAGAAGAACAAGGGAA+AGG 0.586833 8:+77790709 MsaT045871.1:CDS
CAAATCGATGTAACCAGCAA+AGG 0.591633 8:-77790831 None:intergenic
TGATCATCAGATTGTGATGG+TGG 0.592260 8:-77790797 None:intergenic
TCAACACACCCACCTATCCC+CGG 0.597983 8:+77792105 MsaT045871.1:CDS
AAGTATCAGGCATGATCCCA+AGG 0.599595 8:-77792147 None:intergenic
GGGGACTGTACCGGTAAAGG+AGG 0.603300 8:-77790962 None:intergenic
ATGCTGCATGATGGTAAAGC+AGG 0.604164 8:-77790761 None:intergenic
CAATAGAACCGGGGATAGGT+GGG 0.604794 8:-77792113 None:intergenic
CAAAATCAAGACAATTATGG+TGG 0.615149 8:+77792445 MsaT045871.1:CDS
CACGCAATAGAACCGGGGAT+AGG 0.618953 8:-77792117 None:intergenic
GATTCCAAACAAGAAGAACA+AGG 0.625236 8:+77790703 MsaT045871.1:CDS
TTGCACCGCCGCGAGCTGTG+AGG 0.633888 8:+77792021 MsaT045871.1:CDS
CTTCTTCACCTCACAGCTCG+CGG 0.648825 8:-77792029 None:intergenic
TAGTTGTGTTGTGATGTTGG+TGG 0.651734 8:-77792189 None:intergenic
ATGTCAAAGATGCTGCATGA+TGG 0.652263 8:-77790770 None:intergenic
CTTCACCTCACAGCTCGCGG+CGG 0.653337 8:-77792026 None:intergenic
TGTTGATCATCAGATTGTGA+TGG 0.660250 8:-77790800 None:intergenic
ATTCCAAACAAGAAGAACAA+GGG 0.661863 8:+77790704 MsaT045871.1:CDS
CAACATCACAACACAACTAG+CGG 0.662877 8:+77792193 MsaT045871.1:CDS
ATAGCTGGTTAGCACGATCG+AGG 0.663350 8:-77792077 None:intergenic
GAACATGAAGAAGAACCTGA+AGG 0.667636 8:+77791109 MsaT045871.1:CDS
CAAATACTAATGATATGGTG+AGG 0.667790 8:+77792500 MsaT045871.1:CDS
GACATGTCAGTATCAATGGT+GGG 0.669023 8:-77790905 None:intergenic
TGAAGAAGAAACGGAGACAG+GGG 0.670576 8:-77791017 None:intergenic
ACTTGGATGATGGTTATAGG+TGG 0.678436 8:+77791630 MsaT045871.1:CDS
GATCATCAGATTGTGATGGT+GGG 0.680288 8:-77790796 None:intergenic
AGAAGAAACGGAGACAGGGG+TGG 0.684451 8:-77791014 None:intergenic
ATTGCTCCAATGGAGATGGG+AGG 0.700394 8:+77792547 MsaT045871.1:CDS
TGACATGTCAGTATCAATGG+TGG 0.704204 8:-77790906 None:intergenic
CGGTAAAGGAGGCAGCTGGG+TGG 0.705876 8:-77790951 None:intergenic
ATTATTCAAGACCTCAGACG+CGG 0.727700 8:-77790987 None:intergenic
AGCAGCACGCAATAGAACCG+GGG 0.748027 8:-77792122 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 77790668 77792585 77790668 ID=MsaG045871
Chr8 mRNA 77790668 77792585 77790668 ID=MsaT045871.1;Parent=MsaG045871
Chr8 exon 77790668 77791212 77790668 ID=MsaT045871.1.exon1;Parent=MsaT045871.1
Chr8 CDS 77790668 77791212 77790668 ID=cds.MsaT045871.1;Parent=MsaT045871.1
Chr8 exon 77791553 77791696 77791553 ID=MsaT045871.1.exon2;Parent=MsaT045871.1
Chr8 CDS 77791553 77791696 77791553 ID=cds.MsaT045871.1;Parent=MsaT045871.1
Chr8 exon 77792009 77792585 77792009 ID=MsaT045871.1.exon3;Parent=MsaT045871.1
Chr8 CDS 77792009 77792585 77792009 ID=cds.MsaT045871.1;Parent=MsaT045871.1
Gene Sequence

>MsaT045871.1

ATGGCGAATTCTTCAACAACAGCATTTTCAGGTGAGATTCCAAACAAGAAGAACAAGGGAAAGGGAAGTTGTGTAATCAATTTCCCTTTCTCACCTGCTTTACCATCATGCAGCATCTTTGACATGATCCCACCATCACAATCTGATGATCAACAATCTTCTTCCTTTGCTGGTTACATCGATTTGTTGAGTACAAATGATTTCACTTCTTCTTCTTCTACTTTATTCGATTGGTTTCCCACCATTGATACTGACATGTCAGCACCACCTTCCACCACCTTCACCACCCAGCTGCCTCCTTTACCGGTACAGTCCCCGGCCGCGTCTGAGGTCTTGAATAATCCGGCCACCCCTGTCTCCGTTTCTTCTTCAATTTCTTCATCTTCCAATGAAGCTGTTGTTGCAGACAAAGTAACAGTAGCAGAGAATGAACATGAACATGAACATGAAGAAGAACCTGAAGGAGATGAAGCAGAAGAGAAAGATGAAGATGATGGAATCAGACTTGTAGAGAATCAAAATGATCAAGATCAGATGAAGAAACAGTTGAAGCCAAAGAAGAAGAAGAACAAGAAGCTAAGACCAGCCAGAGTTACTTTCAAGACAAACAGCGATGTTGATCACTTGGATGATGGTTATAGGTGGCGCAAATATGGCCAAAAACCAGTCAAAAACAGCCCATTTCCCAGGAGCTATTACCGTTGCACCGCCGCGAGCTGTGAGGTGAAGAAGCGTATTGAGCGTTCGGCTGCAGACTCCTCGATCGTGCTAACCAGCTATGAAGGTCAACACACCCACCTATCCCCGGTTCTATTGCGTGCTGCTAACCTTGGGATCATGCCTGATACTTCTGGTTTCCAAGAACAGGTCCACCAACATCACAACACAACTAGCGGTGTTGTTGGTAGTTCTGTCCTTGGAAACGAATTTGCGATGTCTCAATCACAACAATATCAAAGATTTCAGGATCAGAATCAGAATGTGCTTCATCAGCAGCGTCAAGCAGTGCCATCTTTGTTATATAATAGCCATTATAACAACTCCTTCAACATTTCTCCACTTTTGAATGTTGTTAACTCTGCTGATAATTTGATGAACTCTTCAACATCTTTTGGTGGATTTGTTCAAAATCAAGACAATTATGGTGGAGGTAATTCTTCTGTGTCTGCTTCTATGATGACAAATACTAATGATATGGTGAGGAACAATGGACTTCTTCAGGATATGATTGCTCCAATGGAGATGGGAGGAGCTGGAGCCAAATAA

Protein sequence

>MsaT045871.1

MANSSTTAFSGEIPNKKNKGKGSCVINFPFSPALPSCSIFDMIPPSQSDDQQSSSFAGYIDLLSTNDFTSSSSTLFDWFPTIDTDMSAPPSTTFTTQLPPLPVQSPAASEVLNNPATPVSVSSSISSSSNEAVVADKVTVAENEHEHEHEEEPEGDEAEEKDEDDGIRLVENQNDQDQMKKQLKPKKKKNKKLRPARVTFKTNSDVDHLDDGYRWRKYGQKPVKNSPFPRSYYRCTAASCEVKKRIERSAADSSIVLTSYEGQHTHLSPVLLRAANLGIMPDTSGFQEQVHQHHNTTSGVVGSSVLGNEFAMSQSQQYQRFQDQNQNVLHQQRQAVPSLLYNSHYNNSFNISPLLNVVNSADNLMNSSTSFGGFVQNQDNYGGGNSSVSASMMTNTNDMVRNNGLLQDMIAPMEMGGAGAK*