AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG045939


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045939 MtrunA17_Chr4g0069451 97.037 675 9 3 1 671 1 668 0.0 1338
MsaG045939 MtrunA17_Chr3g0086111 36.996 273 145 6 168 426 178 437 1.54e-45 175
MsaG045939 MtrunA17_Chr3g0086111 40.559 143 85 0 487 629 548 690 3.30e-27 118
MsaG045939 MtrunA17_Chr5g0394201 26.296 540 330 19 157 658 342 851 6.33e-35 142
MsaG045939 MtrunA17_Chr4g0017211 26.439 556 290 16 168 629 1441 1971 8.66e-35 142
MsaG045939 MtrunA17_Chr5g0442141 25.155 485 292 13 176 614 616 1075 4.81e-33 136
MsaG045939 MtrunA17_Chr3g0095091 26.195 481 292 16 176 614 570 1029 5.80e-33 136
MsaG045939 MtrunA17_Chr4g0066741 23.718 468 317 11 170 614 181 631 1.29e-32 135
MsaG045939 MtrunA17_Chr3g0137091 25.572 481 299 13 177 614 289 753 1.62e-32 135
MsaG045939 MtrunA17_Chr2g0286291 24.204 471 311 14 170 614 184 634 1.22e-31 132
MsaG045939 MtrunA17_Chr1g0205891 26.369 493 309 16 157 614 355 828 6.13e-31 129
MsaG045939 MtrunA17_Chr4g0052341 25.051 495 315 13 177 633 745 1221 1.48e-29 125
MsaG045939 MtrunA17_Chr5g0403921 24.521 522 329 17 136 615 151 649 3.05e-29 124
MsaG045939 MtrunA17_Chr4g0066651 25.667 487 290 15 176 614 988 1450 8.40e-28 120
MsaG045939 MtrunA17_Chr8g0384531 24.335 526 311 11 155 607 363 874 5.35e-27 117
MsaG045939 MtrunA17_Chr1g0183681 23.577 492 320 11 168 607 382 869 1.93e-26 115
MsaG045939 MtrunA17_Chr7g0257101 38.462 143 84 2 465 606 1186 1325 5.08e-22 102
MsaG045939 MtrunA17_Chr7g0257101 25.316 316 203 11 122 424 535 830 2.68e-15 80.1
MsaG045939 MtrunA17_Chr7g0232121 25.149 505 312 17 167 615 25 519 6.21e-22 101
MsaG045939 MtrunA17_Chr8g0348721 25.330 454 279 13 195 605 1008 1444 7.80e-21 98.2
MsaG045939 MtrunA17_Chr1g0175191 27.881 269 169 11 168 424 512 767 2.79e-20 96.3
MsaG045939 MtrunA17_Chr1g0175191 36.000 125 80 0 489 613 1078 1202 1.74e-17 87.4
MsaG045939 MtrunA17_Chr1g0163011 36.620 142 90 0 473 614 570 711 8.48e-20 94.4
MsaG045939 MtrunA17_Chr1g0163011 30.597 268 146 12 171 417 189 437 6.31e-18 88.2
MsaG045939 MtrunA17_Chr4g0040301 31.111 135 93 0 473 607 380 514 1.26e-18 90.5
MsaG045939 MtrunA17_Chr1g0168031 31.944 144 95 2 491 632 1005 1147 9.15e-16 81.6
MsaG045939 MtrunA17_Chr1g0190381 32.886 149 86 2 473 607 188 336 2.83e-15 79.3
MsaG045939 MtrunA17_Chr2g0320751 28.387 155 108 2 463 617 842 993 5.05e-15 79.3
MsaG045939 MtrunA17_Chr4g0024921 28.571 154 106 2 457 606 746 899 9.08e-15 78.2
MsaG045939 MtrunA17_Chr1g0212331 35.345 116 75 0 491 606 887 1002 9.70e-14 75.1
MsaG045939 MtrunA17_Chr2g0281601 32.090 134 88 1 480 613 1142 1272 9.64e-13 72.0
MsaG045939 MtrunA17_Chr7g0231521 33.813 139 80 2 489 615 302 440 3.54e-12 69.7
MsaG045939 MtrunA17_Chr7g0255821 33.898 118 76 1 491 606 668 785 3.56e-12 69.7
MsaG045939 MtrunA17_Chr7g0233021 22.976 531 305 19 166 601 645 1166 5.13e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG045939 AT1G48310.1 68.741 675 196 6 6 671 5 673 0.0 937
MsaG045939 AT1G48310.2 68.289 678 199 6 6 671 5 678 0.0 936
MsaG045939 AT1G48310.3 70.894 615 175 3 6 620 5 615 0.0 897
MsaG045939 AT1G48310.4 68.254 504 156 3 6 509 5 504 0.0 705
MsaG045939 AT5G07810.1 35.363 509 263 11 167 623 194 688 1.29e-81 281
MsaG045939 AT5G19310.2 27.291 491 304 16 158 614 102 573 4.66e-35 142
MsaG045939 AT5G19310.1 27.586 493 300 17 158 614 366 837 4.94e-35 143
MsaG045939 AT3G06010.1 25.885 537 337 17 157 658 382 892 7.09e-35 142
MsaG045939 AT2G13370.1 26.327 471 300 12 177 614 625 1081 1.85e-34 141
MsaG045939 AT2G13370.2 26.327 471 300 12 177 614 625 1081 1.85e-34 141
MsaG045939 AT2G13370.3 26.327 471 300 12 177 614 625 1081 1.85e-34 141
MsaG045939 AT2G25170.3 25.714 490 311 11 165 614 287 763 7.13e-34 139
MsaG045939 AT2G25170.1 25.714 490 311 11 165 614 261 737 7.45e-34 139
MsaG045939 AT2G25170.4 25.714 490 311 11 165 614 261 737 7.45e-34 139
MsaG045939 AT2G25170.2 25.714 490 311 11 165 614 278 754 8.05e-34 139
MsaG045939 AT3G06400.1 23.355 471 315 14 170 614 182 632 2.50e-30 128
MsaG045939 AT3G06400.2 23.355 471 315 14 170 614 182 632 2.54e-30 128
MsaG045939 AT3G06400.3 23.368 475 310 15 170 614 182 632 2.71e-30 128
MsaG045939 AT5G18620.1 23.679 473 311 14 170 614 187 637 3.09e-30 128
MsaG045939 AT5G18620.2 23.679 473 311 14 170 614 187 637 3.97e-30 127
MsaG045939 AT4G31900.1 26.216 473 307 12 165 614 213 666 7.07e-30 127
MsaG045939 AT4G31900.3 26.216 473 307 12 165 614 213 666 1.07e-29 126
MsaG045939 AT4G31900.2 26.216 473 307 12 165 614 172 625 1.38e-29 126
MsaG045939 AT2G18760.3 24.490 490 314 12 169 607 436 920 1.97e-29 125
MsaG045939 AT2G18760.4 24.490 490 314 12 169 607 377 861 2.45e-29 125
MsaG045939 AT2G18760.1 24.490 490 314 12 169 607 377 861 2.45e-29 125
MsaG045939 AT2G18760.2 24.490 490 314 12 169 607 377 861 2.45e-29 125
MsaG045939 AT2G18760.7 24.490 490 314 12 169 607 377 861 2.45e-29 125
MsaG045939 AT2G18760.5 24.490 490 314 12 169 607 377 861 2.45e-29 125
MsaG045939 AT2G18760.6 24.490 490 314 12 169 607 377 861 2.45e-29 125
MsaG045939 AT5G63950.1 25.146 513 295 15 169 607 369 866 3.71e-28 121
MsaG045939 AT5G44800.1 25.902 471 296 11 185 622 700 1150 1.53e-27 120
MsaG045939 AT5G63950.2 24.900 498 298 12 169 607 369 849 2.48e-27 119
MsaG045939 AT5G66750.1 24.845 483 304 15 176 615 201 667 2.84e-26 115
MsaG045939 AT2G28290.3 24.899 494 314 16 162 614 738 1215 4.23e-25 112
MsaG045939 AT2G28290.4 24.899 494 314 16 162 614 738 1215 4.23e-25 112
MsaG045939 AT2G28290.6 24.899 494 314 16 162 614 739 1216 4.30e-25 112
MsaG045939 AT2G28290.2 25.253 495 311 17 162 614 738 1215 4.77e-25 112
MsaG045939 AT2G28290.1 24.899 494 314 16 162 614 738 1215 5.35e-25 112
MsaG045939 AT2G28290.5 24.899 494 314 16 162 614 739 1216 5.40e-25 112
MsaG045939 AT2G44980.3 25.000 536 307 17 150 615 19 529 1.55e-23 106
MsaG045939 AT2G46020.5 25.934 455 263 14 195 598 1002 1433 1.69e-22 103
MsaG045939 AT2G46020.1 25.934 455 263 14 195 598 1002 1433 1.69e-22 103
MsaG045939 AT2G46020.6 25.934 455 263 14 195 598 1002 1433 1.69e-22 103
MsaG045939 AT2G46020.2 25.490 459 261 14 195 598 1002 1434 3.99e-22 102
MsaG045939 AT2G46020.3 25.490 459 261 14 195 598 1002 1434 3.99e-22 102
MsaG045939 AT2G46020.4 25.490 459 261 14 195 598 1002 1434 3.99e-22 102
MsaG045939 AT3G57300.1 37.762 143 85 2 465 606 1200 1339 1.04e-21 101
MsaG045939 AT3G57300.1 26.959 319 196 12 122 424 541 838 5.63e-17 86.3
MsaG045939 AT3G57300.4 37.762 143 85 2 465 606 1200 1339 1.04e-21 101
MsaG045939 AT3G57300.4 26.959 319 196 12 122 424 541 838 5.63e-17 86.3
MsaG045939 AT3G57300.2 37.762 143 85 2 465 606 1233 1372 1.08e-21 101
MsaG045939 AT2G44980.2 24.767 537 308 18 150 615 19 530 1.50e-21 100
MsaG045939 AT3G54280.1 29.897 291 158 9 164 427 1439 1710 5.13e-21 99.4
MsaG045939 AT3G54280.1 31.333 150 100 1 483 629 1824 1973 1.68e-16 84.7
MsaG045939 AT3G54280.2 29.897 291 158 9 164 427 1470 1741 5.60e-21 99.0
MsaG045939 AT3G54280.2 31.333 150 100 1 483 629 1855 2004 2.05e-16 84.3
MsaG045939 AT2G44980.1 24.038 520 314 16 150 615 19 511 6.68e-21 98.2
MsaG045939 AT3G12810.2 29.151 271 163 12 168 424 523 778 1.63e-20 97.8
MsaG045939 AT3G12810.2 37.324 142 86 2 488 627 1086 1226 1.40e-19 94.7
MsaG045939 AT3G12810.1 29.151 271 163 12 168 424 527 782 1.69e-20 97.4
MsaG045939 AT3G12810.1 37.324 142 86 2 488 627 1090 1230 1.40e-19 94.7
MsaG045939 AT1G03750.1 32.593 135 91 0 473 607 528 662 3.22e-20 96.3
MsaG045939 AT1G03750.1 28.417 278 152 11 169 417 131 390 5.51e-17 85.9
MsaG045939 AT2G02090.1 38.028 142 88 0 473 614 588 729 1.37e-19 94.0
MsaG045939 AT2G02090.1 27.035 344 209 12 133 455 169 491 6.07e-15 79.0
MsaG045939 AT3G57300.3 26.959 319 196 12 122 424 541 838 5.29e-17 86.3
MsaG045939 AT1G02670.6 29.444 180 121 4 443 617 459 637 3.70e-16 82.8
MsaG045939 AT1G02670.3 29.444 180 121 4 443 617 486 664 3.78e-16 82.8
MsaG045939 AT3G20010.3 35.833 120 77 0 487 606 624 743 5.49e-16 82.4
MsaG045939 AT1G08600.4 34.899 149 83 2 473 607 1115 1263 5.83e-16 82.8
MsaG045939 AT1G08600.3 34.899 149 83 2 473 607 1115 1263 5.83e-16 82.8
MsaG045939 AT1G08600.2 34.899 149 83 2 473 607 1115 1263 5.83e-16 82.8
MsaG045939 AT3G20010.2 35.833 120 77 0 487 606 599 718 6.10e-16 82.4
MsaG045939 AT1G02670.1 29.444 180 121 4 443 617 474 652 6.77e-16 82.0
MsaG045939 AT1G02670.7 29.444 180 121 4 443 617 463 641 6.90e-16 82.0
MsaG045939 AT1G08600.1 34.899 149 83 2 473 607 1094 1242 6.95e-16 82.4
MsaG045939 AT3G20010.1 35.833 120 77 0 487 606 890 1009 8.16e-16 82.0
MsaG045939 AT3G20010.5 35.833 120 77 0 487 606 890 1009 8.16e-16 82.0
MsaG045939 AT3G20010.7 35.833 120 77 0 487 606 890 1009 8.16e-16 82.0
MsaG045939 AT5G22750.1 31.724 145 98 1 473 617 863 1006 9.45e-16 82.0
MsaG045939 AT1G05120.2 29.221 154 105 2 457 606 687 840 1.01e-15 81.6
MsaG045939 AT1G05120.1 29.221 154 105 2 457 606 644 797 1.12e-15 81.6
MsaG045939 AT1G02670.5 29.114 158 107 3 443 595 459 616 3.43e-15 79.7
MsaG045939 AT1G02670.2 29.114 158 107 3 443 595 486 643 4.46e-15 79.3
MsaG045939 AT1G61140.3 25.197 254 175 4 367 613 844 1089 6.44e-15 79.3
MsaG045939 AT1G61140.1 25.197 254 175 4 367 613 1002 1247 8.45e-15 79.0
MsaG045939 AT1G11100.3 32.450 151 102 0 476 626 959 1109 1.63e-14 78.2
MsaG045939 AT1G11100.5 32.450 151 102 0 476 626 915 1065 1.86e-14 77.8
MsaG045939 AT1G11100.2 32.450 151 102 0 476 626 1101 1251 2.16e-14 77.8
MsaG045939 AT1G11100.4 32.450 151 102 0 476 626 1102 1252 2.20e-14 77.8
MsaG045939 AT1G11100.1 32.450 151 102 0 476 626 1058 1208 2.27e-14 77.8
MsaG045939 AT5G43530.1 32.090 134 89 1 473 604 1109 1242 3.92e-14 77.0
MsaG045939 AT1G50410.2 35.345 116 75 0 491 606 828 943 5.68e-14 76.3
MsaG045939 AT1G50410.1 35.345 116 75 0 491 606 828 943 5.68e-14 76.3
MsaG045939 AT1G50410.3 35.345 116 75 0 491 606 828 943 5.68e-14 76.3
MsaG045939 AT5G05130.1 31.538 130 86 2 491 618 727 855 8.16e-12 69.3
MsaG045939 AT3G19210.2 30.216 139 92 4 491 627 551 686 2.04e-11 67.8
MsaG045939 AT3G19210.1 30.216 139 92 4 491 627 553 688 2.07e-11 67.8
MsaG045939 AT3G19210.3 30.216 139 92 4 491 627 553 688 2.10e-11 67.8

Find 145 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGCAAACTGGAAAATT+TGG 0.138072 8:-78732599 MsaT045939.1:CDS
ACTCATGGAGTCTGACTTTA+AGG 0.140657 8:-78737750 MsaT045939.1:intron
TGACTTAGCTGCCTTAATTT+TGG 0.169117 8:+78734797 None:intergenic
ACAATTGGTTACAGAGTTTC+AGG 0.193655 8:-78733350 MsaT045939.1:CDS
ATGAGTGTACTTTGCATCTT+TGG 0.225250 8:+78737767 None:intergenic
CTGATCATCTGAGACCTTTA+AGG 0.228476 8:+78732418 None:intergenic
ACTTGTTGCCTACGCTTTAC+AGG 0.279473 8:+78735650 None:intergenic
TGCTTCTCTTCCGGTTATAA+AGG 0.283170 8:-78736524 MsaT045939.1:intron
TATAAGAATGTTCATGAATA+TGG 0.303993 8:-78735902 MsaT045939.1:CDS
CAAAGCAAACTGGAAAATTT+GGG 0.305183 8:-78732598 MsaT045939.1:CDS
CCAGCTGTTCTTGATTATCT+TGG 0.306687 8:-78734490 MsaT045939.1:CDS
GAGTCAGTACCGGGGACGTT+TGG 0.318051 8:+78732301 None:intergenic
ATTGATGGAGGCACACCTTC+TGG 0.318560 8:-78733382 MsaT045939.1:CDS
CCGCTCAAATCCCAGTCTTC+TGG 0.327290 8:+78741931 None:intergenic
AAGTGCTCTAGCAGCTGCTT+GGG 0.327593 8:+78741717 None:intergenic
CATTTCAGCGAGACGGTATA+AGG 0.331209 8:-78739688 MsaT045939.1:intron
GGGGAGGAGGGTTTGAAGGG+TGG 0.337690 8:+78741851 None:intergenic
GAGGGTTTGAAGGGTGGGAG+CGG 0.340125 8:+78741857 None:intergenic
TGCTGTAGCTGCATGCGTTC+GGG 0.347595 8:-78738256 MsaT045939.1:CDS
TTGCTGTAGCTGCATGCGTT+CGG 0.347916 8:-78738257 MsaT045939.1:CDS
TAAAGAATTGACTAAAGTTT+CGG 0.354859 8:-78741644 MsaT045939.1:CDS
AAGAAATTAGTTACTCTTTG+AGG 0.355154 8:+78741820 None:intergenic
GGAATGCCAAAGAACGCTTA+TGG 0.355556 8:-78741424 MsaT045939.1:CDS
GATGATTCGGAGGCTTAAAA+AGG 0.356401 8:-78735690 MsaT045939.1:CDS
TAGGTTGTCTTATCTCAAAT+TGG 0.358678 8:-78737887 MsaT045939.1:CDS
GAACAACCATAAGCGTTCTT+TGG 0.360264 8:+78741418 None:intergenic
GAGAACAACTGCTTCTCTTC+CGG 0.362729 8:-78736533 MsaT045939.1:CDS
TGGATCCTCCAGGGAATGTT+TGG 0.365360 8:-78735770 MsaT045939.1:intron
AAGCAGTTGTTCTCTTTGCC+TGG 0.369977 8:+78736542 None:intergenic
TGGCCATGAGAACACCTTAA+AGG 0.373696 8:-78732432 MsaT045939.1:CDS
CATATCTGGTTATAATGTTC+AGG 0.376340 8:-78741354 MsaT045939.1:intron
GTTGCTTGCATCCGGATTGA+TGG 0.386327 8:-78733397 MsaT045939.1:CDS
GAGGGTAAAGGCCAAAATTA+AGG 0.386823 8:-78734808 MsaT045939.1:CDS
TGCTTTGCAGGGCTACTCAA+TGG 0.388724 8:+78732392 None:intergenic
GAAGTGCTCTAGCAGCTGCT+TGG 0.392231 8:+78741716 None:intergenic
GACTCCTGGTGATCTAATTC+AGG 0.394051 8:-78733083 MsaT045939.1:CDS
ATCAAGAACAGCTGGAATCT+TGG 0.396243 8:+78734498 None:intergenic
CTTATACCGTCTCGCTGAAA+TGG 0.396539 8:+78739689 None:intergenic
GATATCATCAACTGTGTCAT+TGG 0.397023 8:+78732734 None:intergenic
GCAGAATTGTCTTGGACTCC+TGG 0.398660 8:-78733097 MsaT045939.1:CDS
AAGGTTCTTAAAGACATATC+TGG 0.399289 8:-78741368 MsaT045939.1:CDS
TGTCGCATCTTCTGACAAAA+TGG 0.408653 8:+78732357 None:intergenic
AATTTGCTTCATGTCCTTGT+CGG 0.410046 8:+78735523 None:intergenic
GGGAGGAGGGTTTGAAGGGT+GGG 0.410241 8:+78741852 None:intergenic
CTCTTTGTCAGAAGCCGAAA+AGG 0.416883 8:-78741387 MsaT045939.1:CDS
GGGACTGGGGAAAACGTTGC+AGG 0.416967 8:-78739500 MsaT045939.1:intron
TTCTGGATCAAGGCAACAAT+TGG 0.416992 8:-78733365 MsaT045939.1:CDS
TGCCAAAAGCAAAATTCATC+TGG 0.418829 8:-78737825 MsaT045939.1:CDS
ATCTGCATTACGATTGCAAT+GGG 0.423097 8:-78738205 MsaT045939.1:CDS
AGAACTAGTACCTTTATAAC+CGG 0.430596 8:+78736514 None:intergenic
TCATCTTTGCAGAATTGTCT+TGG 0.432588 8:-78733105 MsaT045939.1:CDS
GAAGACCGCGTTCATAGAAT+TGG 0.435209 8:-78733058 MsaT045939.1:CDS
CCGCAATGTTTCCAGTGGAA+TGG 0.440364 8:+78741608 None:intergenic
GACTTACACCCTTGCAATAC+CGG 0.442612 8:+78735876 None:intergenic
AACATTGGTAGTGTTGTTTG+TGG 0.445669 8:+78741675 None:intergenic
TCGCATCAATCATTGGTAGA+TGG 0.447892 8:+78733522 None:intergenic
GGAATGTTTGGAGTTTATCA+AGG 0.450088 8:-78735758 MsaT045939.1:CDS
ACTTGTTTGAATAGTTCAAT+TGG 0.450376 8:+78736042 None:intergenic
CTATCAAAGCTGGAGGTGTC+GGG 0.454256 8:-78733153 MsaT045939.1:CDS
CGACAACAGCACAGGTGGAT+TGG 0.455826 8:-78732339 MsaT045939.1:CDS
AATTCTATGAACGCGGTCTT+CGG 0.457463 8:+78733060 None:intergenic
TGAACATTCTTATACACATC+AGG 0.458677 8:+78735911 None:intergenic
CAGCTAATACCTCGAAGATC+AGG 0.468996 8:+78739873 None:intergenic
TTTGCAGTTGGAGAGGGTAA+AGG 0.470742 8:-78734820 MsaT045939.1:intron
GGACACAGTGCAAAGCAAAC+TGG 0.473641 8:-78732608 MsaT045939.1:CDS
CAACATTATCTCATATGATC+TGG 0.475954 8:-78737792 MsaT045939.1:CDS
TTTAGCAGATGAAATGGGAC+TGG 0.477156 8:-78739515 MsaT045939.1:CDS
GTTGTCTTATCTCAAATTGG+TGG 0.477189 8:-78737884 MsaT045939.1:CDS
ATGTTCATGAATATGGTAAC+CGG 0.477761 8:-78735895 MsaT045939.1:CDS
GGCAAAGTTTCAGTATGATC+AGG 0.478890 8:-78741587 MsaT045939.1:intron
AGCAGTTGTTCTCTTTGCCT+GGG 0.483187 8:+78736543 None:intergenic
ACACAGTTGATGATATCATA+TGG 0.484288 8:-78732728 MsaT045939.1:intron
TAGTAATGGAACCAGAAGAC+TGG 0.487687 8:-78741942 None:intergenic
ACTTCTGTTCCTGATCTTCG+AGG 0.488114 8:-78739882 MsaT045939.1:intron
CAAATTGGTGGATCAAATAG+AGG 0.489834 8:-78737872 MsaT045939.1:CDS
GGAATTGCACAATTTGATGA+AGG 0.495495 8:-78735720 MsaT045939.1:CDS
CCAAGATAATCAAGAACAGC+TGG 0.495665 8:+78734490 None:intergenic
TTATCTTGGAACTGTAATTG+AGG 0.497194 8:-78734476 MsaT045939.1:intron
CTGCATGCGTTCGGGATTCG+TGG 0.497784 8:-78738248 MsaT045939.1:CDS
GTCAGTACCGGGGACGTTTG+GGG 0.498793 8:+78732303 None:intergenic
AGTAATAGCACGTTGCACTA+AGG 0.499410 8:+78739911 None:intergenic
TCTATCAAAGCTGGAGGTGT+CGG 0.499543 8:-78733154 MsaT045939.1:CDS
TGAAGGCAACAACGATGATT+CGG 0.500616 8:-78735703 MsaT045939.1:CDS
GATGGTGCAAGTATGAGAAC+AGG 0.505461 8:+78738225 None:intergenic
GTAATAGCACGTTGCACTAA+GGG 0.509793 8:+78739912 None:intergenic
CAATATGCAATATTGCTTAG+TGG 0.510384 8:-78736084 MsaT045939.1:CDS
TCGTGTATCGCATCAATCAT+TGG 0.519854 8:+78733515 None:intergenic
CTTACAAGTATATCTGATGA+AGG 0.522829 8:+78738070 None:intergenic
AACGCATGCAGCTACAGCAA+TGG 0.523209 8:+78738260 None:intergenic
TTAGCAGATGAAATGGGACT+GGG 0.526530 8:-78739514 MsaT045939.1:CDS
AAAAGCAAAATTCATCTGGA+TGG 0.528270 8:-78737821 MsaT045939.1:CDS
CCGCGTTCATAGAATTGGCC+AGG 0.532078 8:-78733053 MsaT045939.1:intron
CTTTGCCGCAATGTTTCCAG+TGG 0.533959 8:+78741603 None:intergenic
AAGGTGTGCCTCCATCAATC+CGG 0.538088 8:+78733386 None:intergenic
TTCTTTAGAATGCTCAACAT+TGG 0.553595 8:+78741660 None:intergenic
AAAGATGCAAAGTACACTCA+TGG 0.554876 8:-78737765 MsaT045939.1:CDS
TCAATTGGTCGTGATAAAGC+AGG 0.559335 8:+78736057 None:intergenic
GGCAGCTAAGTCACAAGAGG+AGG 0.562902 8:-78734787 MsaT045939.1:CDS
TCAGTACCGGGGACGTTTGG+GGG 0.563359 8:+78732304 None:intergenic
AGACCTTTAAGGTGTTCTCA+TGG 0.565748 8:+78732429 None:intergenic
GAATGTTTGGAGTTTATCAA+GGG 0.566445 8:-78735757 MsaT045939.1:CDS
TTACTCTTTGAGGACGTGAA+GGG 0.567286 8:+78741830 None:intergenic
CTTCTTAGACTTGGCCGACA+AGG 0.568527 8:-78735537 MsaT045939.1:CDS
GAGGCACACCTTCTGGATCA+AGG 0.569380 8:-78733375 MsaT045939.1:CDS
CAAACTGGAAAATTTGGGGC+AGG 0.571966 8:-78732593 MsaT045939.1:intron
CTGTAGCTATCTATCAAAGC+TGG 0.572952 8:-78733163 MsaT045939.1:intron
TTCTGCAAAGATGACTGTGC+TGG 0.574986 8:+78733114 None:intergenic
ATATGGTAACCGGTATTGCA+AGG 0.575350 8:-78735885 MsaT045939.1:CDS
GTTACTCTTTGAGGACGTGA+AGG 0.579225 8:+78741829 None:intergenic
CTGAACTTCCTGTAAAGCGT+AGG 0.581689 8:-78735658 MsaT045939.1:CDS
GCTTGCATCCGGATTGATGG+AGG 0.584560 8:-78733394 MsaT045939.1:CDS
CATTGCAATCGTAATGCAGA+TGG 0.588376 8:+78738207 None:intergenic
TTCAGGTTTATATTGCAGCA+TGG 0.591892 8:-78739550 MsaT045939.1:intron
CTTCTGACAAAGAGGAGAGA+GGG 0.595533 8:+78741396 None:intergenic
TCGGCCTGAATTAGATCACC+AGG 0.596283 8:+78733079 None:intergenic
AGAAGATGCGACAACAGCAC+AGG 0.599595 8:-78732347 MsaT045939.1:CDS
AGTGCTCTAGCAGCTGCTTG+GGG 0.601499 8:+78741718 None:intergenic
CATCTGCATTACGATTGCAA+TGG 0.601705 8:-78738206 MsaT045939.1:CDS
TAAGGCAGCTAAGTCACAAG+AGG 0.602694 8:-78734790 MsaT045939.1:CDS
AGATGCGACAACAGCACAGG+TGG 0.604898 8:-78732344 MsaT045939.1:CDS
TACTCTTTGAGGACGTGAAG+GGG 0.605144 8:+78741831 None:intergenic
TGATCTAGATGATTCAACAA+TGG 0.606143 8:-78738102 MsaT045939.1:intron
AGTAATGGAACCAGAAGACT+GGG 0.609854 8:-78741941 None:intergenic
TTTGCAGGGCTACTCAATGG+TGG 0.619605 8:+78732395 None:intergenic
TATGGTAACCGGTATTGCAA+GGG 0.625894 8:-78735884 MsaT045939.1:CDS
AATTGTTGCCTTGATCCAGA+AGG 0.626088 8:+78733367 None:intergenic
AATTAATGCTCTATTTCGTG+AGG 0.627475 8:-78735504 MsaT045939.1:intron
CCAGCTTTATACTGATTCTG+CGG 0.633599 8:-78734524 MsaT045939.1:intron
ATTGGTGGATCAAATAGAGG+AGG 0.636256 8:-78737869 MsaT045939.1:CDS
AGATACTATCAAGGCAGCAG+TGG 0.640507 8:-78733323 MsaT045939.1:intron
GCTTCTGACAAAGAGGAGAG+AGG 0.640656 8:+78741395 None:intergenic
TCGAAGATCAGGAACAGAAG+TGG 0.641615 8:+78739884 None:intergenic
TCAAGGGGCAAGTAATCATG+AGG 0.644332 8:-78735741 MsaT045939.1:CDS
TAGCAGATGAAATGGGACTG+GGG 0.646169 8:-78739513 MsaT045939.1:CDS
ACTCTTTGAGGACGTGAAGG+GGG 0.648158 8:+78741832 None:intergenic
CCATTCCACTGGAAACATTG+CGG 0.651817 8:-78741608 MsaT045939.1:CDS
TAAACAGAATATGATTAACA+AGG 0.657232 8:-78734745 MsaT045939.1:intron
CGTCTCTTTCAAGAGAATCG+AGG 0.667725 8:+78741902 None:intergenic
AAAGCAAACTGGAAAATTTG+GGG 0.668375 8:-78732597 MsaT045939.1:CDS
AGGTTTATATTGCAGCATGG+AGG 0.670507 8:-78739547 MsaT045939.1:CDS
CCTGGCCAATTCTATGAACG+CGG 0.673699 8:+78733053 None:intergenic
AATGTTTGGAGTTTATCAAG+GGG 0.675257 8:-78735756 MsaT045939.1:CDS
CCAGAAGACTGGGATTTGAG+CGG 0.679302 8:-78741931 MsaT045939.1:CDS
AGGCAACAACGATGATTCGG+AGG 0.682672 8:-78735700 MsaT045939.1:CDS
TAGCTATCTATCAAAGCTGG+AGG 0.690993 8:-78733160 MsaT045939.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 78732304 78741959 78732304 ID=MsaG045939
Chr8 mRNA 78732304 78741959 78732304 ID=MsaT045939.1;Parent=MsaG045939
Chr8 exon 78732304 78732462 78732304 ID=MsaT045939.1.exon22;Parent=MsaT045939.1
Chr8 CDS 78732304 78732462 78732304 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78732594 78732630 78732594 ID=MsaT045939.1.exon21;Parent=MsaT045939.1
Chr8 CDS 78732594 78732630 78732594 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78732729 78732787 78732729 ID=MsaT045939.1.exon20;Parent=MsaT045939.1
Chr8 CDS 78732729 78732787 78732729 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78733054 78733179 78733054 ID=MsaT045939.1.exon19;Parent=MsaT045939.1
Chr8 CDS 78733054 78733179 78733054 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78733324 78733428 78733324 ID=MsaT045939.1.exon18;Parent=MsaT045939.1
Chr8 CDS 78733324 78733428 78733324 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78733505 78733573 78733505 ID=MsaT045939.1.exon17;Parent=MsaT045939.1
Chr8 CDS 78733505 78733573 78733505 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78734477 78734542 78734477 ID=MsaT045939.1.exon16;Parent=MsaT045939.1
Chr8 CDS 78734477 78734542 78734477 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78734746 78734835 78734746 ID=MsaT045939.1.exon15;Parent=MsaT045939.1
Chr8 CDS 78734746 78734835 78734746 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78735505 78735561 78735505 ID=MsaT045939.1.exon14;Parent=MsaT045939.1
Chr8 CDS 78735505 78735561 78735505 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78735652 78735780 78735652 ID=MsaT045939.1.exon13;Parent=MsaT045939.1
Chr8 CDS 78735652 78735780 78735652 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78735883 78735948 78735883 ID=MsaT045939.1.exon12;Parent=MsaT045939.1
Chr8 CDS 78735883 78735948 78735883 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78736044 78736112 78736044 ID=MsaT045939.1.exon11;Parent=MsaT045939.1
Chr8 CDS 78736044 78736112 78736044 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78736525 78736602 78736525 ID=MsaT045939.1.exon10;Parent=MsaT045939.1
Chr8 CDS 78736525 78736602 78736525 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78737751 78737906 78737751 ID=MsaT045939.1.exon9;Parent=MsaT045939.1
Chr8 CDS 78737751 78737906 78737751 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78738075 78738116 78738075 ID=MsaT045939.1.exon8;Parent=MsaT045939.1
Chr8 CDS 78738075 78738116 78738075 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78738200 78738283 78738200 ID=MsaT045939.1.exon7;Parent=MsaT045939.1
Chr8 CDS 78738200 78738283 78738200 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78739501 78739567 78739501 ID=MsaT045939.1.exon6;Parent=MsaT045939.1
Chr8 CDS 78739501 78739567 78739501 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78739689 78739755 78739689 ID=MsaT045939.1.exon5;Parent=MsaT045939.1
Chr8 CDS 78739689 78739755 78739689 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78739883 78739949 78739883 ID=MsaT045939.1.exon4;Parent=MsaT045939.1
Chr8 CDS 78739883 78739949 78739883 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78741355 78741486 78741355 ID=MsaT045939.1.exon3;Parent=MsaT045939.1
Chr8 CDS 78741355 78741486 78741355 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78741588 78741752 78741588 ID=MsaT045939.1.exon2;Parent=MsaT045939.1
Chr8 CDS 78741588 78741752 78741588 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Chr8 exon 78741834 78741959 78741834 ID=MsaT045939.1.exon1;Parent=MsaT045939.1
Chr8 CDS 78741834 78741959 78741834 ID=cds.MsaT045939.1;Parent=MsaT045939.1
Gene Sequence

>MsaT045939.1

ATGGAACCAGAAGACTGGGATTTGAGCGGTGAAGACCTCGATTCTCTTGAAAGAGACGCTTTCCAGAAAATCGCTCAACTCCGCTCCCACCCTTCAAACCCTCCTCCCCCTTCACGTCCTCAAAGAGTTGATGCTTTGCCCCAAGCAGCTGCTAGAGCACTTCCAACGTCGATAAAATCAGCCACAAACAACACTACCAATGTTGAGCATTCTAAAGAATTGACTAAAGTTTCGGTCAAATTTTTTCTCCATTCCACTGGAAACATTGCGGCAAAGTTTCAGTATGATCAGGTAATAGTTGCTGCTTTTAGAAGAATCCCTAAATCTTTTTGGAATGCCAAAGAACGCTTATGGTTGTTCCCTCTCTCCTCTTTGTCAGAAGCCGAAAAGGTTCTTAAAGACATATCTGGTTATAATGTTCAGGTGGAGAACTTGGATCCCTTAGTGCAACGTGCTATTACTGCTGCCACTTCTGTTCCTGATCTTCGAGATCGATATGATAAGATCCCTAGCGATGTTGAATCAAAACTTTTGCCATTTCAGCGAGACGGTATAAGGTTTATATTGCAGCATGGAGGTCGTGCTTTTTTAGCAGATGAAATGGGACTGGGGAAAACGTTGCAGGCCATTGCTGTAGCTGCATGCGTTCGGGATTCGTGGCCTGTTCTCATACTTGCACCATCTGCATTACGATTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTCTTATCTCAAATTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAAAATTCATCTGGATGGACTATTCAACATTATCTCATATGATCTGGTGCCAAAGATGCAAAGTACACTCATGGAGTCTGACTTTAAGGTTGTAATTGCTGATGAGTCACACTTTCTGAAAAATGCCCAGGCAAAGAGAACAACTGCTTCTCTTCCGGTTATAAAGAAAGCACAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCACGACCAATTGAACTATTCAAACAACTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAATGTTTGGAGTTTATCAAGGGGCAAGTAATCATGAGGAATTGCACAATTTGATGAAGGCAACAACGATGATTCGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCTTAGACTTGGCCGACAAGGACATGAAGCAAATTAATGCTCTATTTCGTGAGTTGGAGAGGGTAAAGGCCAAAATTAAGGCAGCTAAGTCACAAGAGGAGGCTGAATCACTCAAGTTTTCTAAACAGAATATGATTAACAAGCTTTATACTGATTCTGCGGAAGCCAAGATTCCAGCTGTTCTTGATTATCTTGGAACTGTAATTGAGGCAGGCTGCAAGTTTCTTATATTTGCACACCATCTACCAATGATTGATGCGATACACGAGTTTCTTCTTAAAAAAAAGGTTGCTTGCATCCGGATTGATGGAGGCACACCTTCTGGATCAAGGCAACAATTGGTTACAGAGTTTCAGGAAAAAGATACTATCAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTCGGGTTAACATTGACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCTGGTGATCTAATTCAGGCCGAAGACCGCGTTCATAGAATTGGCCAGGAGTCTTCGGTAAATATATACTACTTGCTTGCCAATGACACAGTTGATGATATCATATGGGACACAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGATGATCAGCCACCATTGAGTAGCCCTGCAAAGCAAAAAACTCTTGACCATTTTGTCAGAAGATGCGACAACAGCACAGGTGGATTGGAACATCAGTCAACCCCCAAACGTCCCCGGTACTGA

Protein sequence

>MsaT045939.1

MEPEDWDLSGEDLDSLERDAFQKIAQLRSHPSNPPPPSRPQRVDALPQAAARALPTSIKSATNNTTNVEHSKELTKVSVKFFLHSTGNIAAKFQYDQVIVAAFRRIPKSFWNAKERLWLFPLSSLSEAEKVLKDISGYNVQVENLDPLVQRAITAATSVPDLRDRYDKIPSDVESKLLPFQRDGIRFILQHGGRAFLADEMGLGKTLQAIAVAACVRDSWPVLILAPSALRLQWASMIQQWLNIPSSDILVVLSQIGGSNRGGFNIVSSSAKSKIHLDGLFNIISYDLVPKMQSTLMESDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGMFGVYQGASNHEELHNLMKATTMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELERVKAKIKAAKSQEEAESLKFSKQNMINKLYTDSAEAKIPAVLDYLGTVIEAGCKFLIFAHHLPMIDAIHEFLLKKKVACIRIDGGTPSGSRQQLVTEFQEKDTIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQESSVNIYYLLANDTVDDIIWDTVQSKLENLGQMLDGHENTLKVSDDQPPLSSPAKQKTLDHFVRRCDNSTGGLEHQSTPKRPRY*