AlfalfaGEDB | MsaG045970

M. sativa ssp. caerulea / MsaG045970

KEGG: K13464
GO: GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045970	XP_003609915.1	96.067	178	7	0	1	178	1	178	3.73e-121	349

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045970	sp\|Q9C5K8\|TIF3B_ARATH	41.732	127	54	6	45	162	57	172	3.17e-17	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045970	tr\|G7JR45\|G7JR45_MEDTR	96.067	178	7	0	1	178	1	178	1.78e-121	349

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TFs/TRs:

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Gene ID	Type	Classification
MsaG045970	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045970	MtrunA17_Chr4g0069721	96.067	178	7	0	1	178	1	178	3.43e-125	349
MsaG045970	MtrunA17_Chr2g0302041	55.782	147	60	3	25	168	38	182	1.33e-46	151
MsaG045970	MtrunA17_Chr5g0399851	34.848	132	69	2	41	168	17	135	6.17e-17	73.6
MsaG045970	MtrunA17_Chr5g0399861	30.328	122	70	2	41	162	40	146	3.42e-13	64.3
MsaG045970	MtrunA17_Chr5g0399881	30.081	123	71	2	41	163	40	147	4.09e-12	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG045970	AT5G20900.1	41.732	127	54	6	45	162	57	172	3.22e-18	78.2
MsaG045970	AT3G43440.1	36.667	120	58	3	44	163	130	231	1.49e-16	75.1
MsaG045970	AT3G43440.2	34.426	122	62	3	42	163	42	145	5.03e-16	71.6
MsaG045970	AT1G19180.2	35.135	111	64	1	43	153	58	160	1.07e-12	63.5
MsaG045970	AT1G19180.1	35.135	111	64	1	43	153	124	226	3.89e-12	63.2
MsaG045970	AT1G19180.3	35.135	111	64	1	43	153	124	226	3.89e-12	63.2

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Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGTCAGAGTTTCCTTG+TGG	0.648404	8:+79000472	None:intergenic
AACACCTTGCATCCTGCAAA+TGG	0.468674	8:+79000405	None:intergenic
AAGTCATCTGAAATGAAAAG+TGG	0.529700	8:-79000538	MsaT045970.1:CDS
ACTGGAAAAGAGTGAATTGA+AGG	0.475980	8:+79000510	None:intergenic
AGCAGGAAAACCAACTGATG+GGG	0.615564	8:+79000441	None:intergenic
AGCATTTCTCTGCTGCTAAC+TGG	0.409603	8:-79002081	MsaT045970.1:intron
AGTGACTGTCTGCGTGCTAA+TGG	0.374634	8:+79000037	None:intergenic
AGTTCCATTTGCAGGATGCA+AGG	0.556537	8:-79000409	MsaT045970.1:intron
AGTTTCCTTGTGGAGAAGAA+GGG	0.523527	8:+79000482	None:intergenic
ATCACCCCTTCTTCTCCACA+AGG	0.677373	8:-79000487	MsaT045970.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	78999801	79002167	78999801	ID=MsaG045970
Chr8	mRNA	78999801	79002167	78999801	ID=MsaT045970.1;Parent=MsaG045970
Chr8	exon	78999801	78999900	78999801	ID=MsaT045970.1.exon5;Parent=MsaT045970.1
Chr8	CDS	78999801	78999900	78999801	ID=cds.MsaT045970.1;Parent=MsaT045970.1
Chr8	exon	79000007	79000064	79000007	ID=MsaT045970.1.exon4;Parent=MsaT045970.1
Chr8	CDS	79000007	79000064	79000007	ID=cds.MsaT045970.1;Parent=MsaT045970.1
Chr8	exon	79000410	79000596	79000410	ID=MsaT045970.1.exon3;Parent=MsaT045970.1
Chr8	CDS	79000410	79000596	79000410	ID=cds.MsaT045970.1;Parent=MsaT045970.1
Chr8	exon	79000677	79000782	79000677	ID=MsaT045970.1.exon2;Parent=MsaT045970.1
Chr8	CDS	79000677	79000782	79000677	ID=cds.MsaT045970.1;Parent=MsaT045970.1
Chr8	exon	79002082	79002167	79002082	ID=MsaT045970.1.exon1;Parent=MsaT045970.1
Chr8	CDS	79002082	79002167	79002082	ID=cds.MsaT045970.1;Parent=MsaT045970.1

Gene Sequence

>MsaT045970.1

ATGACTACTTCTAATAGTATCAATAATGTTGACATTAACAGCATCAGTGATCAAGAGTCAGTGAAGCATTTCTCTGCTGCTAACTGGCCATTGTCAACATCTGGACTAAATGCAATGACCCCTGGTACAACTCAGTTTGCCATCCTCTACAATGGAAGCATGTGTGTATATGATGGAATTCCTGCAGAAAAGGTGCATGAGATAATGATGATGGCTTCTGCCAATGCCAAGTCATCTGAAATGAAAAGTGGAATTCCCTTCAATTCACTCTTTTCCAGTATCACCCCTTCTTCTCCACAAGGAAACTCTGACAATTTGCCTTCTCCCCCATCAGTTGGTTTTCCTGCTGCTGAGAAGAGTTCCATTTGCAGGATGCAAGAATTTCCATTAGCACGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGAGGAGAATCAGGGTACGTAGCAAAGCACCTTATACCTCTTCATCATCAAAAGCAGCTAACAACATTGATAACCACTTCAGCCCAGTAATGATGCCACTTGAGGGCAAATAG

Protein sequence

>MsaT045970.1

MTTSNSINNVDINSISDQESVKHFSAANWPLSTSGLNAMTPGTTQFAILYNGSMCVYDGIPAEKVHEIMMMASANAKSSEMKSGIPFNSLFSSITPSSPQGNSDNLPSPPSVGFPAAEKSSICRMQEFPLARRQSLQRFLEKRRIRVRSKAPYTSSSSKAANNIDNHFSPVMMPLEGK*