AlfalfaGEDB | MsaG046013

M. sativa ssp. caerulea / MsaG046013

KEGG: K13464
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046013	XP_003609979.1	92.683	205	11	2	1	204	1	202	1.03e-124	360

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046013	sp\|Q9LMA8\|TI10A_ARATH	36.328	256	106	10	1	203	1	252	1.25e-34	126

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046013	tr\|G7JS78\|G7JS78_MEDTR	92.683	205	11	2	1	204	1	202	4.93e-125	360

TFs/TRs:

Gene ID	Type	Classification
MsaG046013	TF	Tify

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000071	MsaG046013	0.811377	1.238030e-50	2.186502e-48
MsaG000118	MsaG046013	0.839876	2.250896e-57	8.753090e-55
MsaG000236	MsaG046013	0.813452	4.380601e-51	8.145111e-49
MsaG000306	MsaG046013	0.827296	3.018628e-54	8.093472e-52
MsaG000523	MsaG046013	0.815401	1.631238e-51	3.185510e-49
MsaG000692	MsaG046013	0.825172	9.612385e-54	2.429500e-51
MsaG001328	MsaG046013	0.835143	3.630007e-56	1.221124e-53
MsaG001660	MsaG046013	0.823862	1.949315e-53	4.753648e-51
MsaG002587	MsaG046013	0.807390	8.790253e-50	1.409699e-47
MsaG002964	MsaG046013	0.810024	2.419637e-50	4.134428e-48
MsaG002966	MsaG046013	0.808277	5.707018e-50	9.349503e-48
MsaG003192	MsaG046013	0.808734	4.563068e-50	7.558394e-48
MsaG003289	MsaG046013	0.809254	3.535807e-50	5.930155e-48
MsaG003515	MsaG046013	0.822190	4.763767e-53	1.110348e-50
MsaG003649	MsaG046013	0.816424	9.666898e-52	1.937449e-49
MsaG004133	MsaG046013	0.804073	4.339425e-49	6.439099e-47
MsaG004441	MsaG046013	0.866100	7.318083e-65	7.224855e-62
MsaG004757	MsaG046013	0.851113	2.093858e-60	1.179199e-57
MsaG004913	MsaG046013	0.810436	1.974568e-50	3.408132e-48
MsaG005223	MsaG046013	0.840936	1.192458e-57	4.794050e-55
MsaG005229	MsaG046013	0.800644	2.189117e-48	3.003230e-46
MsaG005334	MsaG046013	0.804088	4.307831e-49	6.394496e-47
MsaG005346	MsaG046013	0.806804	1.168254e-49	1.847719e-47
MsaG005512	MsaG046013	0.811179	1.365730e-50	2.400367e-48
MsaG005719	MsaG046013	0.878639	5.007898e-69	8.487845e-66
MsaG006593	MsaG046013	0.807962	6.652980e-50	1.081699e-47
MsaG007240	MsaG046013	0.801944	1.189372e-48	1.680409e-46
MsaG007454	MsaG046013	0.813315	4.692739e-51	8.695355e-49
MsaG007816	MsaG046013	0.832473	1.676169e-55	5.210389e-53
MsaG008880	MsaG046013	0.810339	2.071702e-50	3.567286e-48
MsaG009261	MsaG046013	0.828496	1.557772e-54	4.319814e-52
MsaG009551	MsaG046013	0.847283	2.407329e-59	1.190063e-56
MsaG009850	MsaG046013	0.808293	5.660906e-50	9.277489e-48
MsaG009872	MsaG046013	0.833090	1.179826e-55	3.734416e-53
MsaG010345	MsaG046013	0.846193	4.764131e-59	2.270892e-56
MsaG012446	MsaG046013	0.804732	3.167492e-49	4.772261e-47
MsaG012507	MsaG046013	0.832782	1.406009e-55	4.410219e-53
MsaG012633	MsaG046013	0.829872	7.250775e-55	2.090843e-52
MsaG042351	MsaG046013	0.816016	1.191889e-51	2.364053e-49
MsaG043571	MsaG046013	0.805189	2.544220e-49	3.874214e-47
MsaG045060	MsaG046013	0.811933	9.382775e-51	1.679943e-48
MsaG045062	MsaG046013	0.805432	2.264372e-49	3.467451e-47
MsaG045107	MsaG046013	0.861825	1.543679e-63	1.286748e-60
MsaG045108	MsaG046013	0.823369	2.539463e-53	6.110756e-51
MsaG045145	MsaG046013	0.805424	2.272725e-49	3.479615e-47
MsaG045451	MsaG046013	0.808070	6.313733e-50	1.029199e-47
MsaG045506	MsaG046013	0.809608	2.971023e-50	5.025835e-48
MsaG045952	MsaG046013	0.814495	2.585076e-51	4.933947e-49
MsaG046013	MsaG046113	0.836206	1.959287e-56	6.804550e-54
MsaG046013	MsaG046114	0.802128	1.090637e-48	1.547345e-46
MsaG046013	MsaG046614	0.824361	1.489939e-53	3.683263e-51
MsaG046013	MsaG046928	0.816168	1.102658e-51	2.195605e-49
MsaG046013	MsaG047139	0.815125	1.877376e-51	3.640437e-49
MsaG046013	MsaG002247	0.808123	6.150576e-50	1.003899e-47
MsaG046013	MsaG008516	0.829163	1.076225e-54	3.040830e-52
MsaG046013	MsaG008455	0.835883	2.364492e-56	8.132333e-54
MsaG046013	MsaG012735	0.831041	3.765929e-55	1.122866e-52
MsaG046013	MsaG013871	0.803601	5.431024e-49	7.970859e-47
MsaG046013	MsaG026455	0.805116	2.634650e-49	4.005062e-47
MsaG046013	MsaG029566	0.802108	1.101195e-48	1.561580e-46
MsaG046013	MsaG026065	0.826946	3.658829e-54	9.714170e-52
MsaG046013	MsaG026951	0.806078	1.658916e-49	2.579185e-47
MsaG046013	MsaG033554	0.803378	6.039557e-49	8.818466e-47
MsaG046013	MsaG031296	0.800281	2.593194e-48	3.528396e-46
MsaG046013	MsaG036797	0.835897	2.345265e-56	8.069554e-54
MsaG046013	MsaG034989	0.810193	2.226321e-50	3.819740e-48
MsaG046013	MsaG037655	0.842020	6.200824e-58	2.580315e-55
MsaG046013	MsaG035293	0.852021	1.161566e-60	6.753223e-58
MsaG046013	MsaG038926	0.824816	1.165683e-53	2.917542e-51
MsaG046013	MsaG037052	0.842533	4.540161e-58	1.920643e-55
MsaG046013	MsaG038026	0.816290	1.035511e-51	2.068346e-49
MsaG046013	MsaG039898	0.827984	2.067318e-54	5.650852e-52
MsaG046013	MsaG042416	0.809189	3.650793e-50	6.113456e-48
MsaG046013	MsaG045038	0.809287	3.478571e-50	5.838766e-48
MsaG012671	MsaG046013	0.859230	9.358835e-63	7.066948e-60
MsaG015039	MsaG046013	0.800616	2.218059e-48	3.041014e-46
MsaG016406	MsaG046013	0.816840	7.810610e-52	1.582196e-49
MsaG016837	MsaG046013	0.806840	1.148189e-49	1.817484e-47
MsaG016946	MsaG046013	0.812557	6.865134e-51	1.248298e-48
MsaG017083	MsaG046013	0.815841	1.303478e-51	2.573936e-49
MsaG017193	MsaG046013	0.801357	1.567776e-48	2.185659e-46
MsaG017417	MsaG046013	0.834136	6.483367e-56	2.116205e-53
MsaG017773	MsaG046013	0.823243	2.715478e-53	6.512073e-51
MsaG017972	MsaG046013	0.846727	3.411946e-59	1.655669e-56
MsaG018121	MsaG046013	0.804125	4.232414e-49	6.287774e-47
MsaG018259	MsaG046013	0.805723	1.968453e-49	3.034919e-47
MsaG018436	MsaG046013	0.809108	3.797947e-50	6.347830e-48
MsaG018752	MsaG046013	0.812864	5.886679e-51	1.078564e-48
MsaG019273	MsaG046013	0.802946	7.411759e-49	1.071450e-46
MsaG019296	MsaG046013	0.812147	8.428955e-51	1.517040e-48
MsaG019951	MsaG046013	0.868135	1.651283e-65	1.771208e-62
MsaG020131	MsaG046013	0.806653	1.256688e-49	1.980583e-47
MsaG020747	MsaG046013	0.848554	1.078440e-59	5.563762e-57
MsaG020765	MsaG046013	0.840880	1.233447e-57	4.949966e-55
MsaG021105	MsaG046013	0.851602	1.525142e-60	8.735513e-58
MsaG021516	MsaG046013	0.805487	2.205386e-49	3.381417e-47
MsaG021665	MsaG046013	0.815786	1.340586e-51	2.643482e-49
MsaG022294	MsaG046013	0.805456	2.238119e-49	3.429228e-47
MsaG023475	MsaG046013	0.824499	1.383138e-53	3.432056e-51
MsaG023816	MsaG046013	0.839502	2.813687e-57	1.081338e-54
MsaG023857	MsaG046013	0.823158	2.842700e-53	6.801217e-51
MsaG025732	MsaG046013	0.810482	1.930141e-50	3.335105e-48
MsaG026903	MsaG046013	0.812994	5.513815e-51	1.013535e-48
MsaG027743	MsaG046013	0.817331	6.062925e-52	1.243875e-49
MsaG027863	MsaG046013	0.830551	4.960654e-55	1.458350e-52
MsaG028142	MsaG046013	0.814313	2.835765e-51	5.387746e-49
MsaG028871	MsaG046013	0.850878	2.437221e-60	1.361519e-57
MsaG029075	MsaG046013	0.833113	1.164455e-55	3.688352e-53
MsaG029421	MsaG046013	0.811638	1.087053e-50	1.932157e-48
MsaG030115	MsaG046013	0.803921	4.665390e-49	6.898116e-47
MsaG034837	MsaG046013	0.814794	2.221267e-51	4.271703e-49
MsaG036450	MsaG046013	0.837575	8.794142e-57	3.183530e-54
MsaG040593	MsaG046013	0.826348	5.073595e-54	1.324818e-51
MsaG040733	MsaG046013	0.814660	2.377791e-51	4.557135e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046013	MtrunA17_Chr4g0070271	92.683	205	11	2	1	204	1	202	9.49e-129	360
MsaG046013	MtrunA17_Chr2g0301131	44.828	261	76	11	1	204	1	250	2.28e-49	161
MsaG046013	MtrunA17_Chr4g0070241	78.125	64	14	0	70	133	1	64	1.02e-28	102
MsaG046013	MtrunA17_Chr5g0399881	36.875	160	69	6	76	204	5	163	1.38e-21	87.0
MsaG046013	MtrunA17_Chr5g0399861	32.927	164	69	5	76	204	5	162	2.84e-21	86.3
MsaG046013	MtrunA17_Chr5g0399851	36.364	132	60	2	94	201	11	142	2.94e-20	83.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046013	AT1G19180.1	36.328	256	106	10	1	203	1	252	1.27e-35	126
MsaG046013	AT1G19180.3	36.328	256	106	10	1	203	1	252	1.27e-35	126
MsaG046013	AT1G74950.1	36.100	241	75	12	7	180	1	229	5.18e-27	103
MsaG046013	AT1G74950.2	36.052	233	70	12	7	172	1	221	1.23e-23	94.4
MsaG046013	AT1G19180.2	39.098	133	52	5	99	203	55	186	1.26e-18	80.1
MsaG046013	AT1G17380.1	29.353	201	108	5	13	180	7	206	8.79e-14	68.6

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCGACTTCATCGGACATTTC+TGG	0.184990	8:-79543137	MsaT046013.1:CDS
ATTGTCAATTGTGCAGTTTC+TGG	0.207124	8:+79542514	None:intergenic
CCTTCTTCTCCTTGAGGTAT+TGG	0.218986	8:+79543045	None:intergenic
GGTTGTTGAGGGATCATATT+AGG	0.246891	8:+79542391	None:intergenic
CAACAACCTCCCTCACTAAT+TGG	0.267401	8:-79542376	MsaT046013.1:intron
AGCTTCACTTCGTCGATTCA+TGG	0.304214	8:-79542195	MsaT046013.1:CDS
TCAGGAAAGGTTCTTTGATA+TGG	0.341074	8:+79541747	None:intergenic
TTTATTTACCATTTGTTTCA+GGG	0.363709	8:+79542985	None:intergenic
CGACTTTATCAGTTTGTTGC+CGG	0.376712	8:+79543109	None:intergenic
AGCTCCTCAACTTTCTCAGC+AGG	0.410410	8:+79542454	None:intergenic
TCCGCTCCATGGCTTGTGTT+AGG	0.414480	8:-79541699	MsaT046013.1:CDS
TCATGGAGAAGAGGAAAGAT+AGG	0.451183	8:-79542178	MsaT046013.1:intron
CCAATACCTCAAGGAGAAGA+AGG	0.480824	8:-79543045	MsaT046013.1:CDS
CAATCTACAGGGTCATCACC+TGG	0.484929	8:-79542765	MsaT046013.1:intron
TTAGTGAGGGAGGTTGTTGA+GGG	0.495882	8:+79542380	None:intergenic
TTATTTACCATTTGTTTCAG+GGG	0.508177	8:+79542986	None:intergenic
GTTTCTGGCTCTTTAAGCAT+AGG	0.510723	8:+79542529	None:intergenic
GATACCAATGTCGACTTCAT+CGG	0.515126	8:-79543147	None:intergenic
ATTAGTGAGGGAGGTTGTTG+AGG	0.517348	8:+79542379	None:intergenic
GCATGCACCCCTGAAACAAA+TGG	0.517892	8:-79542993	MsaT046013.1:intron
TAATGGACAAGTTATTGTGT+TGG	0.534161	8:-79542485	MsaT046013.1:CDS
GAGAAGAAGGGTAGTTTCGA+AGG	0.535740	8:-79543032	MsaT046013.1:CDS
CAGGGGTGCATGCGTTGTGA+AGG	0.536647	8:+79543003	None:intergenic
CCTGGTTCATCTTCTCACTC+TGG	0.547944	8:-79542747	MsaT046013.1:CDS
CCAGAGTGAGAAGATGAACC+AGG	0.548191	8:+79542747	None:intergenic
AGCATGCTGACTCCGCTCCA+TGG	0.562298	8:-79541710	MsaT046013.1:CDS
TGCATGCGTTGTGAAGGTTA+AGG	0.575616	8:+79543009	None:intergenic
AAATCAATTACCAATTAGTG+AGG	0.584879	8:+79542366	None:intergenic
GGTTCTTTGATATGGTGAGT+AGG	0.584950	8:+79541755	None:intergenic
TTCTGGAGCAGAGTCAGGAA+AGG	0.587295	8:+79541734	None:intergenic
GTTTGTGGGAAATAAATCCA+TGG	0.589977	8:+79542719	None:intergenic
TTAGCACCTAACACAAGCCA+TGG	0.596993	8:+79541693	None:intergenic
AACTACCCTTCTTCTCCTTG+AGG	0.603992	8:+79543039	None:intergenic
TTCTCACTCTGGAATAACCA+TGG	0.605298	8:-79542736	MsaT046013.1:CDS
CAATTACCAATTAGTGAGGG+AGG	0.610131	8:+79542370	None:intergenic
CAATACCTCAAGGAGAAGAA+GGG	0.616382	8:-79543044	MsaT046013.1:CDS
TTCGTCGATTCATGGAGAAG+AGG	0.618289	8:-79542187	MsaT046013.1:CDS
ACCTAACACAAGCCATGGAG+CGG	0.623220	8:+79541698	None:intergenic
TCTATTGAGCCAATACCTCA+AGG	0.624878	8:-79543054	MsaT046013.1:CDS
AATCAATTACCAATTAGTGA+GGG	0.634671	8:+79542367	None:intergenic
ATGTCCGATGAAGTCGACAT+TGG	0.636880	8:+79543143	None:intergenic
TTACAAGTTTGAGAAAACGT+AGG	0.650898	8:+79543077	None:intergenic
CAACAAACTGATAAAGTCGT+CGG	0.655555	8:-79543105	MsaT046013.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	79541683	79543162	79541683	ID=MsaG046013
Chr8	mRNA	79541683	79543162	79541683	ID=MsaT046013.1;Parent=MsaG046013
Chr8	exon	79541683	79541785	79541683	ID=MsaT046013.1.exon5;Parent=MsaT046013.1
Chr8	CDS	79541683	79541785	79541683	ID=cds.MsaT046013.1;Parent=MsaT046013.1
Chr8	exon	79542179	79542236	79542179	ID=MsaT046013.1.exon4;Parent=MsaT046013.1
Chr8	CDS	79542179	79542236	79542179	ID=cds.MsaT046013.1;Parent=MsaT046013.1
Chr8	exon	79542377	79542561	79542377	ID=MsaT046013.1.exon3;Parent=MsaT046013.1
Chr8	CDS	79542377	79542561	79542377	ID=cds.MsaT046013.1;Parent=MsaT046013.1
Chr8	exon	79542675	79542777	79542675	ID=MsaT046013.1.exon2;Parent=MsaT046013.1
Chr8	CDS	79542675	79542777	79542675	ID=cds.MsaT046013.1;Parent=MsaT046013.1
Chr8	exon	79542994	79543162	79542994	ID=MsaT046013.1.exon1;Parent=MsaT046013.1
Chr8	CDS	79542994	79543162	79542994	ID=cds.MsaT046013.1;Parent=MsaT046013.1

Gene Sequence

>MsaT046013.1

ATGTCGACTTCATCGGACATTTCTGGTTTTTCCGGCAACAAACTGATAAAGTCGTCGGAGAAACCTACGTTTTCTCAAACTTGTAATCTATTGAGCCAATACCTCAAGGAGAAGAAGGGTAGTTTCGAAGGCCTTAACCTTCACAACGCATGCACCCCTGAAACAAATGGGTCATCACCTGGTTCATCTTCTCACTCTGGAATAACCATGGATTTATTTCCCACAAACGTGACACCGAAAAACCTTACAACTATGGATTTTTTCTTTCCAAGAGTTATTAATCCTATGCTTAAAGAGCCAGAAACTGCACAATTGACAATGTTTTATAATGGACAAGTTATTGTGTTGGATGATTTTCCTGCTGAGAAAGTTGAGGAGCTGAAATCATTTGCTAGAACTCAGACTCAGCATTCAGATGTTCCTAATATGATCCCTCAACAACCTCCCTCACTAATTGATATGCCAATTGCTAGAAAAGCTTCACTTCGTCGATTCATGGAGAAGAGGAAAGATAGAGTTTCTGCCTACTCACCATATCAAAGAACCTTTCCTGACTCTGCTCCAGAAAAGCATGCTGACTCCGCTCCATGGCTTGTGTTAGGTGCTAAATCAATGTAA

Protein sequence

>MsaT046013.1

MSTSSDISGFSGNKLIKSSEKPTFSQTCNLLSQYLKEKKGSFEGLNLHNACTPETNGSSPGSSSHSGITMDLFPTNVTPKNLTTMDFFFPRVINPMLKEPETAQLTMFYNGQVIVLDDFPAEKVEELKSFARTQTQHSDVPNMIPQQPPSLIDMPIARKASLRRFMEKRKDRVSAYSPYQRTFPDSAPEKHADSAPWLVLGAKSM*