AlfalfaGEDB | MsaG046108

M. sativa ssp. caerulea / MsaG046108

KEGG: K09338
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046108	XP_003610006.1	91.457	199	13	2	1	199	1	195	5.61e-118	344

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046108	sp\|P46604\|HAT22_ARATH	42.523	214	89	4	1	180	1	214	4.39e-39	138

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046108	tr\|G7JT79\|G7JT79_MEDTR	91.457	199	13	2	1	199	1	195	2.68e-118	344

TFs/TRs:

Gene ID	Type	Classification
MsaG046108	TF	HB-HD-ZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000032	MsaG046108	0.805853	1.849454e-49	2.860155e-47
MsaG000146	MsaG046108	0.801341	1.579094e-48	2.200707e-46
MsaG000137	MsaG046108	0.823458	2.421372e-53	5.840394e-51
MsaG000286	MsaG046108	0.813094	5.243415e-51	9.662694e-49
MsaG000570	MsaG046108	0.803541	5.588239e-49	8.190485e-47
MsaG000545	MsaG046108	0.816725	8.285556e-52	1.673481e-49
MsaG000793	MsaG046108	0.836293	1.862434e-56	6.485491e-54
MsaG000944	MsaG046108	0.802892	7.604718e-49	1.097978e-46
MsaG001036	MsaG046108	0.839986	2.108514e-57	8.227473e-55
MsaG001308	MsaG046108	0.850584	2.945574e-60	1.628967e-57
MsaG001767	MsaG046108	0.875976	4.186380e-68	6.288141e-65
MsaG001902	MsaG046108	0.803772	5.006383e-49	7.376938e-47
MsaG001956	MsaG046108	0.859762	6.484708e-63	4.996357e-60
MsaG002213	MsaG046108	0.805316	2.394389e-49	3.656700e-47
MsaG002298	MsaG046108	0.815058	1.942471e-51	3.760433e-49
MsaG002636	MsaG046108	0.811295	1.289268e-50	2.272446e-48
MsaG003267	MsaG046108	0.812785	6.126034e-51	1.120199e-48
MsaG003355	MsaG046108	0.824588	1.318545e-53	3.279597e-51
MsaG003527	MsaG046108	0.803481	5.749948e-49	8.415620e-47
MsaG003517	MsaG046108	0.801009	1.845148e-48	2.552195e-46
MsaG003591	MsaG046108	0.820478	1.177645e-52	2.623032e-50
MsaG003738	MsaG046108	0.863866	3.648963e-64	3.295004e-61
MsaG004031	MsaG046108	0.800471	2.372778e-48	3.242461e-46
MsaG004191	MsaG046108	0.809802	2.699435e-50	4.588082e-48
MsaG004377	MsaG046108	0.824802	1.174569e-53	2.938626e-51
MsaG004433	MsaG046108	0.831483	2.935737e-55	8.866498e-53
MsaG004495	MsaG046108	0.839595	2.661655e-57	1.025856e-54
MsaG004712	MsaG046108	0.820415	1.217049e-52	2.706361e-50
MsaG005139	MsaG046108	0.818384	3.515799e-52	7.411490e-50
MsaG005213	MsaG046108	0.811263	1.309675e-50	2.306662e-48
MsaG005338	MsaG046108	0.819619	1.847922e-52	4.023168e-50
MsaG005906	MsaG046108	0.811476	1.178109e-50	2.085787e-48
MsaG006129	MsaG046108	0.802122	1.093926e-48	1.551785e-46
MsaG006366	MsaG046108	0.857924	2.285410e-62	1.643350e-59
MsaG006475	MsaG046108	0.842850	3.743796e-58	1.599834e-55
MsaG006476	MsaG046108	0.823126	2.891665e-53	6.912475e-51
MsaG006504	MsaG046108	0.853617	4.086255e-61	2.512550e-58
MsaG006686	MsaG046108	0.826512	4.638968e-54	1.216887e-51
MsaG006713	MsaG046108	0.859099	1.023518e-62	7.690315e-60
MsaG006803	MsaG046108	0.827455	2.766108e-54	7.449414e-52
MsaG007064	MsaG046108	0.860781	3.202793e-63	2.565599e-60
MsaG007212	MsaG046108	0.818852	2.757591e-52	5.884350e-50
MsaG007283	MsaG046108	0.817510	5.528394e-52	1.139440e-49
MsaG007516	MsaG046108	0.853863	3.473237e-61	2.154572e-58
MsaG008125	MsaG046108	0.808739	4.551661e-50	7.540511e-48
MsaG008167	MsaG046108	0.837078	1.177413e-56	4.198191e-54
MsaG008305	MsaG046108	0.809920	2.547185e-50	4.341490e-48
MsaG008444	MsaG046108	0.823838	1.974896e-53	4.812946e-51
MsaG008458	MsaG046108	0.864269	2.735401e-64	2.510075e-61
MsaG008834	MsaG046108	0.805525	2.165135e-49	3.322662e-47
MsaG009674	MsaG046108	0.817469	5.646013e-52	1.162467e-49
MsaG009900	MsaG046108	0.807443	8.569312e-50	1.375991e-47
MsaG010305	MsaG046108	0.813341	4.632622e-51	8.589578e-49
MsaG010316	MsaG046108	0.812561	6.853950e-51	1.246371e-48
MsaG010952	MsaG046108	0.813193	4.989670e-51	9.217644e-49
MsaG011389	MsaG046108	0.825727	7.115015e-54	1.826093e-51
MsaG012360	MsaG046108	0.813951	3.404787e-51	6.410604e-49
MsaG012430	MsaG046108	0.850387	3.343180e-60	1.836014e-57
MsaG012487	MsaG046108	0.816394	9.820106e-52	1.966650e-49
MsaG043238	MsaG046108	0.811538	1.142522e-50	2.025812e-48
MsaG043554	MsaG046108	0.811417	1.213487e-50	2.145289e-48
MsaG044321	MsaG046108	0.803843	4.840325e-49	7.143917e-47
MsaG044570	MsaG046108	0.825466	8.199156e-54	2.089076e-51
MsaG044602	MsaG046108	0.824957	1.080398e-53	2.714526e-51
MsaG044881	MsaG046108	0.825660	7.376574e-54	1.889633e-51
MsaG045275	MsaG046108	0.801397	1.538709e-48	2.147106e-46
MsaG045326	MsaG046108	0.815213	1.795004e-51	3.488698e-49
MsaG045454	MsaG046108	0.811971	9.204959e-51	1.649622e-48
MsaG045456	MsaG046108	0.810889	1.577235e-50	2.752482e-48
MsaG045634	MsaG046108	0.815430	1.607461e-51	3.141358e-49
MsaG045646	MsaG046108	0.804810	3.051538e-49	4.605941e-47
MsaG045735	MsaG046108	0.827739	2.366112e-54	6.423382e-52
MsaG045896	MsaG046108	0.867531	2.575871e-65	2.695314e-62
MsaG045923	MsaG046108	0.840113	1.953846e-57	7.654418e-55
MsaG045994	MsaG046108	0.859633	7.088293e-63	5.434907e-60
MsaG046108	MsaG046163	0.809336	3.396561e-50	5.707761e-48
MsaG046108	MsaG046278	0.825093	1.003446e-53	2.530659e-51
MsaG046108	MsaG046459	0.825253	9.202243e-54	2.330900e-51
MsaG046108	MsaG046687	0.838918	3.980606e-57	1.502263e-54
MsaG046108	MsaG046635	0.826831	3.896611e-54	1.031220e-51
MsaG046108	MsaG046784	0.831343	3.177598e-55	9.557484e-53
MsaG046108	MsaG046866	0.805347	2.357924e-49	3.603774e-47
MsaG046108	MsaG001761	0.826625	4.360676e-54	1.147435e-51
MsaG046108	MsaG005823	0.815798	1.331864e-51	2.627191e-49
MsaG046108	MsaG002072	0.825028	1.039344e-53	2.616570e-51
MsaG046108	MsaG002432	0.830687	4.594444e-55	1.356003e-52
MsaG046108	MsaG001760	0.827450	2.773888e-54	7.469287e-52
MsaG046108	MsaG006166	0.814821	2.191206e-51	4.216734e-49
MsaG046108	MsaG008818	0.833709	8.283536e-56	2.670053e-53
MsaG046108	MsaG009219	0.843286	2.869542e-58	1.243511e-55
MsaG046108	MsaG010025	0.851300	1.854768e-60	1.051357e-57
MsaG046108	MsaG008699	0.806863	1.135285e-49	1.798084e-47
MsaG046108	MsaG013966	0.838329	5.640699e-57	2.089875e-54
MsaG046108	MsaG013813	0.810620	1.802364e-50	3.124834e-48
MsaG046108	MsaG012731	0.816620	8.743884e-52	1.761273e-49
MsaG046108	MsaG014169	0.854773	1.901901e-61	1.218707e-58
MsaG046108	MsaG019320	0.847816	1.720951e-59	8.662103e-57
MsaG046108	MsaG019765	0.846018	5.315472e-59	2.519049e-56
MsaG046108	MsaG019406	0.801757	1.298827e-48	1.827274e-46
MsaG046108	MsaG027141	0.839477	2.855409e-57	1.096569e-54
MsaG046108	MsaG028008	0.836686	1.480602e-56	5.216939e-54
MsaG046108	MsaG028138	0.811689	1.059718e-50	1.885967e-48
MsaG046108	MsaG027385	0.824127	1.689819e-53	4.150763e-51
MsaG046108	MsaG031392	0.800697	2.134895e-48	2.932415e-46
MsaG046108	MsaG031895	0.826839	3.878315e-54	1.026629e-51
MsaG046108	MsaG033663	0.808167	6.022410e-50	9.840100e-48
MsaG046108	MsaG030906	0.824628	1.290121e-53	3.212427e-51
MsaG046108	MsaG032721	0.802431	9.454373e-49	1.350732e-46
MsaG046108	MsaG032701	0.835368	3.187240e-56	1.079425e-53
MsaG046108	MsaG032833	0.869237	7.295042e-66	8.188300e-63
MsaG046108	MsaG030125	0.815950	1.232281e-51	2.440196e-49
MsaG046108	MsaG036792	0.810607	1.813524e-50	3.143196e-48
MsaG046108	MsaG038135	0.824831	1.156526e-53	2.895815e-51
MsaG046108	MsaG036611	0.816647	8.622613e-52	1.738029e-49
MsaG046108	MsaG036891	0.815709	1.394115e-51	2.743754e-49
MsaG046108	MsaG036763	0.804404	3.704895e-49	5.539764e-47
MsaG046108	MsaG045902	0.800020	2.928091e-48	3.960860e-46
MsaG046108	MsaG041725	0.834603	4.956458e-56	1.640701e-53
MsaG013228	MsaG046108	0.826518	4.624065e-54	1.213159e-51
MsaG014554	MsaG046108	0.859511	7.713364e-63	5.886403e-60
MsaG015012	MsaG046108	0.867996	1.829808e-65	1.951461e-62
MsaG015319	MsaG046108	0.816574	8.953182e-52	1.801333e-49
MsaG015918	MsaG046108	0.837101	1.161347e-56	4.143787e-54
MsaG015993	MsaG046108	0.801544	1.435459e-48	2.009733e-46
MsaG016531	MsaG046108	0.804404	3.704201e-49	5.538769e-47
MsaG016652	MsaG046108	0.856193	7.364017e-62	4.967989e-59
MsaG017131	MsaG046108	0.824591	1.316547e-53	3.274877e-51
MsaG017358	MsaG046108	0.835656	2.696906e-56	9.212767e-54
MsaG017399	MsaG046108	0.822720	3.592204e-53	8.493512e-51
MsaG017540	MsaG046108	0.821906	5.539385e-53	1.281377e-50
MsaG017783	MsaG046108	0.814604	2.446524e-51	4.682209e-49
MsaG017906	MsaG046108	0.819776	1.701554e-52	3.720055e-50
MsaG017957	MsaG046108	0.812730	6.296528e-51	1.149795e-48
MsaG017963	MsaG046108	0.832371	1.775843e-55	5.503945e-53
MsaG018437	MsaG046108	0.834151	6.430655e-56	2.099927e-53
MsaG018682	MsaG046108	0.856720	5.165421e-62	3.552667e-59
MsaG018792	MsaG046108	0.829485	8.997512e-55	2.565871e-52
MsaG019184	MsaG046108	0.851391	1.748502e-60	9.942076e-58
MsaG020533	MsaG046108	0.817864	4.604279e-52	9.576446e-50
MsaG020738	MsaG046108	0.806928	1.100185e-49	1.745126e-47
MsaG021128	MsaG046108	0.816202	1.083649e-51	2.159608e-49
MsaG021153	MsaG046108	0.819714	1.757642e-52	3.836387e-50
MsaG021160	MsaG046108	0.803761	5.033834e-49	7.415436e-47
MsaG021343	MsaG046108	0.830526	5.030023e-55	1.477686e-52
MsaG021422	MsaG046108	0.855082	1.548406e-61	1.003245e-58
MsaG021888	MsaG046108	0.812159	8.380654e-51	1.508764e-48
MsaG023272	MsaG046108	0.803196	6.582446e-49	9.571080e-47
MsaG023522	MsaG046108	0.831253	3.342119e-55	1.002574e-52
MsaG023912	MsaG046108	0.823190	2.794555e-53	6.691905e-51
MsaG023997	MsaG046108	0.812533	6.949129e-51	1.262807e-48
MsaG024335	MsaG046108	0.803846	4.832875e-49	7.133476e-47
MsaG024877	MsaG046108	0.802854	7.742371e-49	1.116850e-46
MsaG025903	MsaG046108	0.807074	1.024698e-49	1.631043e-47
MsaG027229	MsaG046108	0.820114	1.425850e-52	3.145512e-50
MsaG027305	MsaG046108	0.839149	3.470127e-57	1.318981e-54
MsaG027369	MsaG046108	0.825115	9.916353e-54	2.502337e-51
MsaG027435	MsaG046108	0.838441	5.278496e-57	1.962557e-54
MsaG027500	MsaG046108	0.813283	4.768778e-51	8.829166e-49
MsaG027563	MsaG046108	0.809158	3.706175e-50	6.201763e-48
MsaG027805	MsaG046108	0.836695	1.472888e-56	5.191238e-54
MsaG027935	MsaG046108	0.836980	1.246879e-56	4.432451e-54
MsaG028585	MsaG046108	0.810797	1.651331e-50	2.875326e-48
MsaG028627	MsaG046108	0.810158	2.264579e-50	3.882145e-48
MsaG028928	MsaG046108	0.831630	2.702091e-55	8.196504e-53
MsaG029065	MsaG046108	0.887242	3.682578e-72	9.425533e-69
MsaG029106	MsaG046108	0.870061	3.942249e-66	4.580207e-63
MsaG029403	MsaG046108	0.834388	5.610300e-56	1.845209e-53
MsaG029973	MsaG046108	0.818684	3.008738e-52	6.392043e-50
MsaG030033	MsaG046108	0.807329	9.055920e-50	1.450200e-47
MsaG030337	MsaG046108	0.869654	5.347653e-66	6.107705e-63
MsaG030353	MsaG046108	0.846757	3.348057e-59	1.626290e-56
MsaG030494	MsaG046108	0.852662	7.646083e-61	4.545862e-58
MsaG030665	MsaG046108	0.830316	5.656563e-55	1.651903e-52
MsaG031319	MsaG046108	0.847878	1.654259e-59	8.343991e-57
MsaG032785	MsaG046108	0.807368	8.886110e-50	1.424312e-47
MsaG033289	MsaG046108	0.807108	1.008172e-49	1.605998e-47
MsaG033570	MsaG046108	0.833869	7.557972e-56	2.447483e-53
MsaG033852	MsaG046108	0.892348	3.830102e-74	1.277992e-70
MsaG034510	MsaG046108	0.844853	1.094970e-58	4.993563e-56
MsaG035215	MsaG046108	0.825021	1.043375e-53	2.626191e-51
MsaG035216	MsaG046108	0.807811	7.163344e-50	1.160464e-47
MsaG035531	MsaG046108	0.860005	5.483720e-63	4.264317e-60
MsaG035540	MsaG046108	0.811177	1.367465e-50	2.403295e-48
MsaG035553	MsaG046108	0.866519	5.397839e-65	5.419965e-62
MsaG035715	MsaG046108	0.833634	8.645630e-56	2.780596e-53
MsaG036482	MsaG046108	0.810804	1.645192e-50	2.865191e-48
MsaG037150	MsaG046108	0.846983	2.905372e-59	1.421932e-56
MsaG037969	MsaG046108	0.819658	1.810585e-52	3.945977e-50
MsaG038311	MsaG046108	0.813901	3.493094e-51	6.568530e-49
MsaG038602	MsaG046108	0.802150	1.079529e-48	1.532357e-46
MsaG038752	MsaG046108	0.859432	8.145707e-63	6.197925e-60
MsaG040708	MsaG046108	0.810469	1.942382e-50	3.355264e-48
MsaG041086	MsaG046108	0.813455	4.374365e-51	8.134127e-49
MsaG041293	MsaG046108	0.828048	1.995419e-54	5.464180e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046108	MtrunA17_Chr4g0071411	91.457	199	13	2	1	199	1	195	5.16e-122	344
MsaG046108	MtrunA17_Chr8g0385491	83.495	103	13	2	1	103	83	181	1.95e-45	148
MsaG046108	MtrunA17_Chr5g0400781	71.287	101	25	1	80	180	115	211	1.99e-39	135
MsaG046108	MtrunA17_Chr5g0399491	57.258	124	46	1	61	184	112	228	3.41e-39	135
MsaG046108	MtrunA17_Chr4g0055851	61.261	111	37	1	80	184	102	212	7.10e-38	132
MsaG046108	MtrunA17_Chr8g0335131	70.213	94	28	0	91	184	145	238	5.08e-37	130
MsaG046108	MtrunA17_Chr1g0175651	54.198	131	54	2	50	180	118	242	1.93e-36	129
MsaG046108	MtrunA17_Chr7g0258831	52.672	131	57	1	50	180	123	248	2.68e-36	128
MsaG046108	MtrunA17_Chr4g0054421	70.000	90	27	0	91	180	126	215	4.05e-36	127
MsaG046108	MtrunA17_Chr2g0308611	61.765	102	39	0	79	180	187	288	3.25e-35	126
MsaG046108	MtrunA17_Chr1g0151971	68.889	90	28	0	91	180	129	218	2.05e-34	123
MsaG046108	MtrunA17_Chr2g0299031	45.355	183	82	3	11	191	15	181	1.08e-33	119
MsaG046108	MtrunA17_Chr4g0044091	50.000	118	54	2	86	200	59	174	5.51e-30	109
MsaG046108	MtrunA17_Chr3g0135331	55.963	109	43	2	86	190	139	246	1.12e-27	106
MsaG046108	MtrunA17_Chr7g0217111	48.864	88	45	0	91	178	79	166	2.48e-19	83.2
MsaG046108	MtrunA17_Chr3g0119291	47.368	95	43	1	92	179	59	153	4.08e-19	82.4
MsaG046108	MtrunA17_Chr8g0362751	48.936	94	41	1	92	178	89	182	5.56e-19	82.4
MsaG046108	MtrunA17_Chr5g0415941	46.809	94	43	1	92	178	87	180	2.45e-18	81.3
MsaG046108	MtrunA17_Chr7g0265521	42.453	106	61	0	73	178	44	149	2.46e-18	79.7
MsaG046108	MtrunA17_Chr6g0450991	48.387	93	41	1	92	177	67	159	4.11e-18	80.1
MsaG046108	MtrunA17_Chr8g0362151	46.591	88	47	0	92	179	77	164	1.82e-17	78.2
MsaG046108	MtrunA17_Chr6g0453021	47.872	94	42	1	92	178	96	189	1.83e-17	78.2
MsaG046108	MtrunA17_Chr8g0381741	45.263	95	45	1	91	178	53	147	2.62e-17	78.2
MsaG046108	MtrunA17_Chr5g0416391	45.455	88	48	0	92	179	77	164	7.22e-17	76.6
MsaG046108	MtrunA17_Chr1g0179581	38.318	107	65	1	68	174	5	110	1.84e-15	69.3
MsaG046108	MtrunA17_Chr3g0123691	40.385	104	53	2	82	178	52	153	2.05e-15	72.8
MsaG046108	MtrunA17_Chr4g0060031	45.161	93	44	1	92	177	95	187	8.73e-15	71.6
MsaG046108	MtrunA17_Chr8g0346251	34.266	143	80	2	65	193	7	149	1.20e-13	67.4
MsaG046108	MtrunA17_Chr3g0127511	42.857	84	48	0	95	178	41	124	1.75e-12	64.3
MsaG046108	MtrunA17_Chr5g0403691	47.297	74	39	0	85	158	46	119	6.97e-11	59.3
MsaG046108	MtrunA17_Chr5g0403701	47.297	74	39	0	85	158	46	119	8.11e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046108	AT4G37790.1	42.523	214	89	4	1	180	1	214	4.46e-40	138
MsaG046108	AT3G60390.1	63.889	108	38	1	78	184	147	254	3.86e-39	136
MsaG046108	AT5G06710.1	61.165	103	40	0	78	180	176	278	2.58e-37	132
MsaG046108	AT2G22800.1	42.079	202	94	4	1	180	1	201	1.63e-36	129
MsaG046108	AT4G16780.1	61.111	108	38	2	81	188	119	222	6.57e-36	127
MsaG046108	AT2G44910.1	64.894	94	33	0	91	184	162	255	1.92e-34	124
MsaG046108	AT4G17460.1	63.830	94	34	0	91	184	134	227	3.82e-33	120
MsaG046108	AT5G47370.1	63.830	94	34	0	91	184	129	222	4.53e-33	120
MsaG046108	AT1G70920.2	44.094	127	66	1	67	188	14	140	4.26e-28	104
MsaG046108	AT1G70920.1	44.094	127	66	1	67	188	44	170	5.59e-28	105
MsaG046108	AT2G01430.1	49.167	120	56	1	78	192	120	239	9.09e-28	106
MsaG046108	AT5G06710.4	59.155	71	29	0	73	143	171	241	6.56e-22	90.5
MsaG046108	AT1G26960.1	40.000	120	71	1	61	179	39	158	1.07e-18	81.6
MsaG046108	AT1G69780.1	48.864	88	45	0	92	179	85	172	1.51e-17	79.0
MsaG046108	AT3G01470.1	48.387	93	41	2	92	177	68	160	4.56e-17	77.4
MsaG046108	AT2G01430.2	48.864	88	38	2	78	160	120	205	5.37e-17	76.3
MsaG046108	AT3G01220.1	50.633	79	39	0	92	170	87	165	8.96e-17	77.0
MsaG046108	AT5G15150.1	48.936	94	41	1	92	178	115	208	2.06e-16	76.3
MsaG046108	AT2G46680.2	43.158	95	50	1	83	177	27	117	5.62e-16	74.3
MsaG046108	AT2G46680.1	43.158	95	50	1	83	177	27	117	6.19e-16	74.3
MsaG046108	AT5G65310.1	43.158	95	47	1	92	179	72	166	1.65e-15	73.6
MsaG046108	AT5G03790.1	42.708	96	55	0	85	180	70	165	1.75e-15	72.8
MsaG046108	AT5G65310.2	43.158	95	47	1	92	179	54	148	1.90e-15	73.2
MsaG046108	AT2G22430.1	44.211	95	46	1	92	179	62	156	5.17e-15	72.4
MsaG046108	AT4G40060.1	44.086	93	48	1	92	180	59	151	6.68e-15	72.0
MsaG046108	AT5G03790.2	44.444	90	50	0	85	174	70	159	3.55e-14	68.2
MsaG046108	AT3G61890.1	40.964	83	49	0	95	177	33	115	2.36e-13	66.6
MsaG046108	AT2G36610.1	38.596	114	62	2	75	180	54	167	7.98e-13	64.3
MsaG046108	AT4G36740.2	40.625	96	57	0	83	178	47	142	3.65e-12	63.2
MsaG046108	AT4G36740.1	40.625	96	57	0	83	178	46	141	3.79e-12	63.2
MsaG046108	AT5G53980.1	43.333	90	49	2	90	178	9	97	4.36e-12	62.0
MsaG046108	AT2G18550.1	38.679	106	63	1	73	178	44	147	4.93e-12	62.8
MsaG046108	AT5G66700.1	45.833	72	39	0	92	163	71	142	1.74e-11	61.6
MsaG046108	AT1G27045.4	42.391	92	53	0	92	183	68	159	8.03e-11	60.1

Find 32 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAAGGTGAAAGATTCAATT+TGG	0.267895	8:-80585458	MsaT046108.1:CDS
ACGTTCATAGGTTCTCCTTT+TGG	0.352374	8:+80585502	None:intergenic
TTGAGGTTTGGTTTCAGAAC+AGG	0.362659	8:-80584904	MsaT046108.1:CDS
GTCTTGTCTTTAACCTCAAT+TGG	0.365222	8:+80584930	None:intergenic
TTGTTGTTGTGTACGTTCAT+AGG	0.371543	8:+80585490	None:intergenic
TCTACGATCGTTGTTGTTGT+TGG	0.376794	8:+80585384	None:intergenic
AAGATTAAAGAAGGAATTGC+AGG	0.404223	8:-80584542	MsaT046108.1:CDS
AGACAAGACAAATTGAGGTT+TGG	0.409339	8:-80584916	MsaT046108.1:CDS
ACAGGTTTATGTCTAGGTCT+TGG	0.420666	8:-80585610	MsaT046108.1:CDS
TTATGTCTAGGTCTTGGAAT+AGG	0.424289	8:-80585604	MsaT046108.1:CDS
TTGCAGGAACTCAAAGTTGT+TGG	0.456628	8:-80584526	MsaT046108.1:CDS
TAGCACTTGCTGACCAATTG+AGG	0.458161	8:-80584943	MsaT046108.1:CDS
GCATTCTTCATCACTTTCCA+TGG	0.470187	8:+80585636	None:intergenic
GTTAAAGACAAGACAAATTG+AGG	0.472426	8:-80584921	MsaT046108.1:CDS
ATACCGGATTAAGAGTGTTA+TGG	0.475608	8:+80585305	None:intergenic
AGTGATGAAGAATGCAATAC+AGG	0.485322	8:-80585628	MsaT046108.1:CDS
GCTCCATAACACTCTTAATC+CGG	0.495490	8:-80585308	MsaT046108.1:intron
AAGAGTGTTATGGAGCTTGA+AGG	0.507942	8:+80585315	None:intergenic
TTGGACAAAGCTCAAAAGCT+AGG	0.524782	8:+80585521	None:intergenic
GACTAAGCTGAAGCAGATAG+AGG	0.526640	8:-80584617	MsaT046108.1:CDS
TGAGAACAAAAGATTAAAGA+AGG	0.527592	8:-80584551	MsaT046108.1:CDS
TGCAATACAGGTTTATGTCT+AGG	0.537810	8:-80585616	MsaT046108.1:CDS
CTTGAAGGTGCTCTCAAGCA+TGG	0.539476	8:+80585330	None:intergenic
GATGAACGTTGAGGGCATAA+CGG	0.572104	8:+80584496	None:intergenic
GGTTTCAGAACAGGAGAGCA+AGG	0.572572	8:-80584895	MsaT046108.1:intron
ATTAGTGAATAAATCTGTGA+TGG	0.573054	8:-80585557	MsaT046108.1:CDS
TCTTGGAATAGGTGCAACAA+AGG	0.613459	8:-80585593	MsaT046108.1:CDS
TAAGCTGAAGCAGATAGAGG+TGG	0.656332	8:-80584614	MsaT046108.1:CDS
AAAGAAACTGAGGCTAACAA+AGG	0.656758	8:-80585362	MsaT046108.1:CDS
TCAAAAGCTAGGTCAAAACA+AGG	0.669862	8:+80585532	None:intergenic
ACGTTCATCATCAAAACCAG+TGG	0.688173	8:-80584482	MsaT046108.1:intron
ACGATCGTAGAAAGAAACTG+AGG	0.720750	8:-80585372	MsaT046108.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	80583122	80585656	80583122	ID=MsaG046108
Chr8	mRNA	80583122	80585656	80583122	ID=MsaT046108.1;Parent=MsaG046108
Chr8	exon	80583122	80583139	80583122	ID=MsaT046108.1.exon4;Parent=MsaT046108.1
Chr8	CDS	80583122	80583139	80583122	ID=cds.MsaT046108.1;Parent=MsaT046108.1
Chr8	exon	80584483	80584639	80584483	ID=MsaT046108.1.exon3;Parent=MsaT046108.1
Chr8	CDS	80584483	80584639	80584483	ID=cds.MsaT046108.1;Parent=MsaT046108.1
Chr8	exon	80584896	80584975	80584896	ID=MsaT046108.1.exon2;Parent=MsaT046108.1
Chr8	CDS	80584896	80584975	80584896	ID=cds.MsaT046108.1;Parent=MsaT046108.1
Chr8	exon	80585309	80585656	80585309	ID=MsaT046108.1.exon1;Parent=MsaT046108.1
Chr8	CDS	80585309	80585656	80585309	ID=cds.MsaT046108.1;Parent=MsaT046108.1

Gene Sequence

>MsaT046108.1

ATGGAAAGTGATGAAGAATGCAATACAGGTTTATGTCTAGGTCTTGGAATAGGTGCAACAAAGGTGAAGAAGCAGAAATTAGTGAATAAATCTGTGATGGCACCTTGTTTTGACCTAGCTTTTGAGCTTTGTCCAAAAGGAGAACCTATGAACGTACACAACAACAACAACAACAGCAAAGGTGAAAGATTCAATTTGGAGAGACACCAATATTATCAAAATGTAACGTGTAGCACTGATTCTGATAACACCAACAACAACAACGATCGTAGAAAGAAACTGAGGCTAACAAAGGAGCAATCATCCATGCTTGAGAGCACCTTCAAGCTCCATAACACTCTTAATCCGGTTCAGAAAATAGCACTTGCTGACCAATTGAGGTTAAAGACAAGACAAATTGAGGTTTGGTTTCAGAACAGGAGAGCAAGGACTAAGCTGAAGCAGATAGAGGTGGATTATGAGTTGTTGAAAAAACATTGTCAAAATCTAAGTGATGAGAACAAAAGATTAAAGAAGGAATTGCAGGAACTCAAAGTTGTTGGACAATTTCCGTTATGCCCTCAACGTTCATCATCAAAACCAGTGATTGGAGAGTCGATATAA

Protein sequence

>MsaT046108.1

MESDEECNTGLCLGLGIGATKVKKQKLVNKSVMAPCFDLAFELCPKGEPMNVHNNNNNSKGERFNLERHQYYQNVTCSTDSDNTNNNNDRRKKLRLTKEQSSMLESTFKLHNTLNPVQKIALADQLRLKTRQIEVWFQNRRARTKLKQIEVDYELLKKHCQNLSDENKRLKKELQELKVVGQFPLCPQRSSSKPVIGESI*