AlfalfaGEDB | MsaG046113

M. sativa ssp. caerulea / MsaG046113

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046113	XP_003610014.1	88.991	436	46	2	1	434	1	436	0.0	788

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046113	sp\|Q9SII6\|PIX13_ARATH	60.458	349	137	1	83	430	47	395	4.39e-150	435

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046113	tr\|G7JT87\|G7JT87_MEDTR	88.991	436	46	2	1	434	1	436	0.0	788

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000015	MsaG046113	0.812372	7.532427e-51	1.363314e-48
MsaG000071	MsaG046113	0.821100	8.484469e-53	1.921170e-50
MsaG000115	MsaG046113	0.801376	1.553740e-48	2.167035e-46
MsaG000118	MsaG046113	0.861095	2.573220e-63	2.085772e-60
MsaG000236	MsaG046113	0.856594	5.622809e-62	3.849494e-59
MsaG000242	MsaG046113	0.832931	1.292245e-55	4.071023e-53
MsaG000250	MsaG046113	0.850103	4.011362e-60	2.181429e-57
MsaG000306	MsaG046113	0.907761	8.540243e-81	6.987881e-77
MsaG000359	MsaG046113	0.810775	1.668721e-50	2.904101e-48
MsaG000410	MsaG046113	0.858072	2.066091e-62	1.493807e-59

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046113	MtrunA17_Chr4g0071481	88.991	436	46	2	1	434	1	436	0.0	788
MsaG046113	MtrunA17_Chr8g0370461	53.723	376	155	5	41	411	22	383	6.34e-136	396
MsaG046113	MtrunA17_Chr5g0448661	57.862	318	130	2	100	416	82	396	3.68e-132	386
MsaG046113	MtrunA17_Chr5g0406841	53.846	351	157	3	80	425	103	453	1.32e-127	377
MsaG046113	MtrunA17_Chr2g0328171	53.083	373	161	6	64	428	19	385	2.26e-127	374
MsaG046113	MtrunA17_Chr3g0143951	57.680	319	127	4	107	422	66	379	4.27e-121	358
MsaG046113	MtrunA17_Chr8g0370571	56.508	315	132	4	101	411	34	347	4.39e-121	357
MsaG046113	MtrunA17_Chr5g0435211	53.355	313	143	2	100	409	52	364	3.39e-119	353
MsaG046113	MtrunA17_Chr7g0238671	52.744	328	148	3	100	424	50	373	3.59e-119	353
MsaG046113	MtrunA17_Chr5g0416311	54.662	311	136	3	100	407	53	361	2.78e-117	348

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046113	AT2G17220.2	60.458	349	137	1	83	430	46	394	3.66e-151	435
MsaG046113	AT2G17220.1	60.458	349	137	1	83	430	47	395	4.46e-151	435
MsaG046113	AT4G35600.1	50.275	364	167	5	65	419	22	380	1.14e-124	368
MsaG046113	AT4G35600.2	50.275	364	167	5	65	419	23	381	1.25e-124	368
MsaG046113	AT2G28930.2	53.936	343	150	3	100	434	46	388	2.94e-124	367
MsaG046113	AT2G28930.3	53.936	343	150	3	100	434	49	391	5.11e-124	366
MsaG046113	AT2G28930.1	53.936	343	150	3	100	434	57	399	1.21e-123	365
MsaG046113	AT5G02290.2	55.414	314	137	2	100	410	45	358	1.43e-122	362
MsaG046113	AT5G02290.1	55.414	314	137	2	100	410	45	358	1.43e-122	362
MsaG046113	AT1G07570.1	56.037	323	139	2	100	419	45	367	2.24e-122	362

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Find 113 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTGTATGGATT+TGG	0.337681	8:+80625087	MsaT046113.1:CDS
AAAATGTGATAGGAGAGGGT+GGG	0.653956	8:+80623840	MsaT046113.1:CDS
AAAGTGATGTGTATGGATTT+GGG	0.494879	8:+80625088	MsaT046113.1:CDS
AAATGTTCAGTCACTTTCAT+GGG	0.485411	8:+80624361	MsaT046113.1:CDS
AACTTAAGATTGATAAGGAA+TGG	0.556325	8:+80623578	MsaT046113.1:CDS
AAGCAATATGGATCCAAAGT+TGG	0.537949	8:+80625227	MsaT046113.1:CDS
AAGTAATGATTGGAGCAGCC+AGG	0.464562	8:+80624396	MsaT046113.1:CDS
AATACAAGTACATCCCTTTG+GGG	0.672695	8:+80623686	MsaT046113.1:CDS
AATATGGATCCAAAGTTGGA+AGG	0.612661	8:+80625231	MsaT046113.1:CDS
AATGGCAATTCAACATCTGT+TGG	0.492214	8:+80623596	MsaT046113.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	80622628	80625458	80622628	ID=MsaG046113
Chr8	mRNA	80622628	80625458	80622628	ID=MsaT046113.1;Parent=MsaG046113
Chr8	exon	80622628	80622712	80622628	ID=MsaT046113.1.exon1;Parent=MsaT046113.1
Chr8	CDS	80622628	80622712	80622628	ID=cds.MsaT046113.1;Parent=MsaT046113.1
Chr8	exon	80623549	80623982	80623549	ID=MsaT046113.1.exon2;Parent=MsaT046113.1
Chr8	CDS	80623549	80623982	80623549	ID=cds.MsaT046113.1;Parent=MsaT046113.1
Chr8	exon	80624118	80624253	80624118	ID=MsaT046113.1.exon3;Parent=MsaT046113.1
Chr8	CDS	80624118	80624253	80624118	ID=cds.MsaT046113.1;Parent=MsaT046113.1
Chr8	exon	80624354	80624493	80624354	ID=MsaT046113.1.exon4;Parent=MsaT046113.1
Chr8	CDS	80624354	80624493	80624354	ID=cds.MsaT046113.1;Parent=MsaT046113.1
Chr8	exon	80624845	80624968	80624845	ID=MsaT046113.1.exon5;Parent=MsaT046113.1
Chr8	CDS	80624845	80624968	80624845	ID=cds.MsaT046113.1;Parent=MsaT046113.1
Chr8	exon	80625073	80625458	80625073	ID=MsaT046113.1.exon6;Parent=MsaT046113.1
Chr8	CDS	80625073	80625458	80625073	ID=cds.MsaT046113.1;Parent=MsaT046113.1

Gene Sequence

>MsaT046113.1

ATGGGGAACTGCTTGACTAGAAGCCTTCAATCCTCAGGCGATCGTCCCAACTCTAGTACTGCCCCTGACAACAACAATCAATCAGGGAGTATTCTGTTTTCTTCTGGTCTAAGCAACTTAAGATTGATAAGGAATGGCAATTCAACATCTGTTGGGCGTAGCAGCAACTCTGGAGGAAATAGCAGACTATTCAGTAGTAGTAATAATCACTCAACAGGCAATAATACAAGTACATCCCTTTGGGGCTCTGAGAATAGCCAGGCCTCTCGAATGAGAGATGAGGACGAGTTTCCTCATGGGCAGATCTTGGATGCTGCCAACTTGAAAGTTTTTACTTTGGCAGAACTGAAATCAGCTACTAGAAATTTTCGTGCTGAAAATGTGATAGGAGAGGGTGGGTTTGGTAAAGTATTCAAGGGTTTCATTAAGGAGGGAGCAGAATCAAAAAAAGGTGAGGGTTTGATTATTGCCATCAAGATATTGAAATCTGACAGCATGCAAGGATATCAGGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGCTGTTGGGATTTGGGCGCGAGGAAGATCAGCTTTTTCTGGTGTATGAGTTTATGCACCGTGGCAGCTTGGATAACCACCTATATGGAAGAGGTTCAAATGTTCAGTCACTTTCATGGGACAGAAGGCTGAAAGTAATGATTGGAGCAGCCAGGGGACTAAATTTTCTTCACTCGGAGAAGACAATTATATACAGAGATTTCAAGTCCTCAAATATACTACTTGACAAGGCATACACAGCCAAGTTATCAGACTTTGGCATGGCTAAATCTGGTCCTTCTGATGATCACACTCATGTATCAACACGAATTATGGGAACATGCGGCTATGCCGCTCCAGAGTATATTGCCACAGGCCATTTGTCTGTGAAAAGTGATGTGTATGGATTTGGGATTGTTTTGTTGGAGATATTAACAGGTAAGGGGATAAGTGAGATAATACGCCTGAGTGAGCCAAAGTCCTTATGTGATTGGCTCAAATCAAACCTGTTAAATAGAGCGAAATCGAGAAGCAATATGGATCCAAAGTTGGAAGGCAAGTATCCACCAAACTTAGCTTCACAAGTAGCTCAACTTGCTTTCAAATGCATCCAAACAGAACCCAAAATTAGGCCATCAATGAAGGAAGTTGTTGAAACATTGGAAAGTATTGAAGCAGCCAATGAGAAACCGGCTGATAATAGAAAGAAGACTACTAACTCCAAGACAGTTCAACAACATGGCCAACCAGATGGTGGTTAA

Protein sequence

>MsaT046113.1

MGNCLTRSLQSSGDRPNSSTAPDNNNQSGSILFSSGLSNLRLIRNGNSTSVGRSSNSGGNSRLFSSSNNHSTGNNTSTSLWGSENSQASRMRDEDEFPHGQILDAANLKVFTLAELKSATRNFRAENVIGEGGFGKVFKGFIKEGAESKKGEGLIIAIKILKSDSMQGYQEWQSEVNFLGRLSHPNLVKLLGFGREEDQLFLVYEFMHRGSLDNHLYGRGSNVQSLSWDRRLKVMIGAARGLNFLHSEKTIIYRDFKSSNILLDKAYTAKLSDFGMAKSGPSDDHTHVSTRIMGTCGYAAPEYIATGHLSVKSDVYGFGIVLLEILTGKGISEIIRLSEPKSLCDWLKSNLLNRAKSRSNMDPKLEGKYPPNLASQVAQLAFKCIQTEPKIRPSMKEVVETLESIEAANEKPADNRKKTTNSKTVQQHGQPDGG*