Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046137 | XP_003610054.2 | 97.179 | 390 | 9 | 2 | 1 | 389 | 1 | 389 | 0.0 | 768 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046137 | sp|Q9LU68|CIA2_ARATH | 46.563 | 451 | 158 | 19 | 1 | 389 | 1 | 430 | 1.76e-79 | 254 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046137 | tr|A0A396IGF5|A0A396IGF5_MEDTR | 97.179 | 390 | 9 | 2 | 1 | 389 | 1 | 389 | 0.0 | 768 |
Gene ID | Type | Classification |
---|---|---|
MsaG046137 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000116 | MsaG046137 | 0.815570 | 1.496946e-51 | 2.935719e-49 |
MsaG000537 | MsaG046137 | 0.825506 | 8.021582e-54 | 2.046154e-51 |
MsaG000705 | MsaG046137 | 0.822975 | 3.135148e-53 | 7.464191e-51 |
MsaG002133 | MsaG046137 | 0.830500 | 5.102595e-55 | 1.497918e-52 |
MsaG002142 | MsaG046137 | 0.804223 | 4.038976e-49 | 6.014116e-47 |
MsaG002636 | MsaG046137 | 0.810141 | 2.283696e-50 | 3.913297e-48 |
MsaG004010 | MsaG046137 | 0.848390 | 1.196957e-59 | 6.140835e-57 |
MsaG004455 | MsaG046137 | 0.807430 | 8.622539e-50 | 1.384135e-47 |
MsaG004588 | MsaG046137 | 0.808614 | 4.838921e-50 | 7.991836e-48 |
MsaG005275 | MsaG046137 | 0.837583 | 8.756051e-57 | 3.170472e-54 |
MsaG005649 | MsaG046137 | 0.825926 | 6.386175e-54 | 1.648168e-51 |
MsaG005922 | MsaG046137 | 0.827058 | 3.439968e-54 | 9.161631e-52 |
MsaG006355 | MsaG046137 | 0.828625 | 1.450412e-54 | 4.036600e-52 |
MsaG006426 | MsaG046137 | 0.814846 | 2.163275e-51 | 4.165614e-49 |
MsaG007146 | MsaG046137 | 0.837140 | 1.135443e-56 | 4.056195e-54 |
MsaG007836 | MsaG046137 | 0.865700 | 9.774448e-65 | 9.495995e-62 |
MsaG008058 | MsaG046137 | 0.815268 | 1.745423e-51 | 3.397116e-49 |
MsaG008125 | MsaG046137 | 0.837234 | 1.074240e-56 | 3.848474e-54 |
MsaG008424 | MsaG046137 | 0.800704 | 2.128811e-48 | 2.924472e-46 |
MsaG008848 | MsaG046137 | 0.841346 | 9.317013e-58 | 3.794583e-55 |
MsaG009874 | MsaG046137 | 0.845353 | 8.032734e-59 | 3.723950e-56 |
MsaG010604 | MsaG046137 | 0.809531 | 3.085229e-50 | 5.209573e-48 |
MsaG011147 | MsaG046137 | 0.809136 | 3.745825e-50 | 6.265010e-48 |
MsaG011469 | MsaG046137 | 0.813817 | 3.643792e-51 | 6.837590e-49 |
MsaG012162 | MsaG046137 | 0.867468 | 2.697886e-65 | 2.815319e-62 |
MsaG012334 | MsaG046137 | 0.837723 | 8.061578e-57 | 2.931541e-54 |
MsaG012447 | MsaG046137 | 0.821350 | 7.435445e-53 | 1.694774e-50 |
MsaG042353 | MsaG046137 | 0.822639 | 3.749619e-53 | 8.846449e-51 |
MsaG042354 | MsaG046137 | 0.807315 | 9.116412e-50 | 1.459391e-47 |
MsaG042534 | MsaG046137 | 0.813464 | 4.354318e-51 | 8.098635e-49 |
MsaG042720 | MsaG046137 | 0.848294 | 1.271804e-59 | 6.504026e-57 |
MsaG043029 | MsaG046137 | 0.801925 | 1.200351e-48 | 1.695188e-46 |
MsaG043183 | MsaG046137 | 0.835126 | 3.666021e-56 | 1.232611e-53 |
MsaG044316 | MsaG046137 | 0.830005 | 6.732840e-55 | 1.948858e-52 |
MsaG044709 | MsaG046137 | 0.827394 | 2.860699e-54 | 7.691207e-52 |
MsaG046137 | MsaG046368 | 0.900694 | 1.308489e-77 | 6.975562e-74 |
MsaG046137 | MsaG046860 | 0.813130 | 5.149900e-51 | 9.498597e-49 |
MsaG046137 | MsaG001616 | 0.805565 | 2.124277e-49 | 3.263009e-47 |
MsaG046137 | MsaG002980 | 0.857358 | 3.356194e-62 | 2.363047e-59 |
MsaG046137 | MsaG008699 | 0.811600 | 1.107899e-50 | 1.967430e-48 |
MsaG046137 | MsaG014519 | 0.857225 | 3.673837e-62 | 2.573722e-59 |
MsaG046137 | MsaG012002 | 0.830773 | 4.378148e-55 | 1.295414e-52 |
MsaG046137 | MsaG022641 | 0.859843 | 6.135743e-63 | 4.742086e-60 |
MsaG046137 | MsaG018327 | 0.826541 | 4.565559e-54 | 1.198565e-51 |
MsaG046137 | MsaG017922 | 0.819348 | 2.128981e-52 | 4.602789e-50 |
MsaG046137 | MsaG027637 | 0.832667 | 1.501455e-55 | 4.693567e-53 |
MsaG046137 | MsaG026769 | 0.824086 | 1.727760e-53 | 4.239184e-51 |
MsaG046137 | MsaG032852 | 0.819230 | 2.264374e-52 | 4.880142e-50 |
MsaG046137 | MsaG036285 | 0.826325 | 5.137308e-54 | 1.340558e-51 |
MsaG046137 | MsaG040323 | 0.805140 | 2.604927e-49 | 3.962125e-47 |
MsaG046137 | MsaG034802 | 0.834967 | 4.019216e-56 | 1.344932e-53 |
MsaG046137 | MsaG036986 | 0.816356 | 1.001381e-51 | 2.003528e-49 |
MsaG046137 | MsaG037636 | 0.801330 | 1.587430e-48 | 2.211784e-46 |
MsaG014042 | MsaG046137 | 0.801979 | 1.170205e-48 | 1.654645e-46 |
MsaG014314 | MsaG046137 | 0.807645 | 7.765467e-50 | 1.252960e-47 |
MsaG014842 | MsaG046137 | 0.802126 | 1.091802e-48 | 1.548932e-46 |
MsaG015319 | MsaG046137 | 0.836515 | 1.636051e-56 | 5.735148e-54 |
MsaG015322 | MsaG046137 | 0.828023 | 2.023386e-54 | 5.536843e-52 |
MsaG015328 | MsaG046137 | 0.868632 | 1.143909e-65 | 1.252236e-62 |
MsaG016416 | MsaG046137 | 0.820113 | 1.426256e-52 | 3.146373e-50 |
MsaG017407 | MsaG046137 | 0.822577 | 3.875366e-53 | 9.127817e-51 |
MsaG017919 | MsaG046137 | 0.804992 | 2.796718e-49 | 4.239209e-47 |
MsaG017887 | MsaG046137 | 0.844436 | 1.416870e-58 | 6.372733e-56 |
MsaG017992 | MsaG046137 | 0.821179 | 8.139569e-53 | 1.846936e-50 |
MsaG018405 | MsaG046137 | 0.854081 | 3.007394e-61 | 1.880204e-58 |
MsaG018493 | MsaG046137 | 0.822278 | 4.545396e-53 | 1.061991e-50 |
MsaG018680 | MsaG046137 | 0.869917 | 4.391252e-66 | 5.071396e-63 |
MsaG018736 | MsaG046137 | 0.816681 | 8.475565e-52 | 1.709898e-49 |
MsaG018849 | MsaG046137 | 0.830247 | 5.879857e-55 | 1.713720e-52 |
MsaG019060 | MsaG046137 | 0.842747 | 3.985348e-58 | 1.697488e-55 |
MsaG019016 | MsaG046137 | 0.844784 | 1.142592e-58 | 5.198896e-56 |
MsaG019278 | MsaG046137 | 0.837770 | 7.844326e-57 | 2.856686e-54 |
MsaG019894 | MsaG046137 | 0.851533 | 1.594691e-60 | 9.112160e-58 |
MsaG020173 | MsaG046137 | 0.805500 | 2.191187e-49 | 3.360682e-47 |
MsaG020850 | MsaG046137 | 0.804088 | 4.308481e-49 | 6.395436e-47 |
MsaG020840 | MsaG046137 | 0.806465 | 1.376558e-49 | 2.159986e-47 |
MsaG020863 | MsaG046137 | 0.824494 | 1.387360e-53 | 3.442008e-51 |
MsaG021888 | MsaG046137 | 0.830940 | 3.985533e-55 | 1.184905e-52 |
MsaG022579 | MsaG046137 | 0.816545 | 9.086797e-52 | 1.826839e-49 |
MsaG023779 | MsaG046137 | 0.806164 | 1.591799e-49 | 2.479882e-47 |
MsaG025985 | MsaG046137 | 0.810867 | 1.594372e-50 | 2.780874e-48 |
MsaG027102 | MsaG046137 | 0.821773 | 5.941864e-53 | 1.369630e-50 |
MsaG027543 | MsaG046137 | 0.808563 | 4.961844e-50 | 8.184873e-48 |
MsaG027563 | MsaG046137 | 0.807378 | 8.842093e-50 | 1.417609e-47 |
MsaG028181 | MsaG046137 | 0.832554 | 1.600537e-55 | 4.987097e-53 |
MsaG028232 | MsaG046137 | 0.810391 | 2.018679e-50 | 3.480460e-48 |
MsaG028968 | MsaG046137 | 0.861525 | 1.904914e-63 | 1.569656e-60 |
MsaG028969 | MsaG046137 | 0.849839 | 4.753760e-60 | 2.562248e-57 |
MsaG028983 | MsaG046137 | 0.862816 | 7.684136e-64 | 6.658500e-61 |
MsaG029106 | MsaG046137 | 0.820228 | 1.342729e-52 | 2.971208e-50 |
MsaG029684 | MsaG046137 | 0.856165 | 7.506775e-62 | 5.059080e-59 |
MsaG030197 | MsaG046137 | 0.800013 | 2.937688e-48 | 3.973262e-46 |
MsaG030593 | MsaG046137 | 0.814845 | 2.164979e-51 | 4.168733e-49 |
MsaG031104 | MsaG046137 | 0.834386 | 5.618018e-56 | 1.847631e-53 |
MsaG032797 | MsaG046137 | 0.803239 | 6.449879e-49 | 9.387518e-47 |
MsaG033967 | MsaG046137 | 0.808821 | 4.373617e-50 | 7.259519e-48 |
MsaG034620 | MsaG046137 | 0.806189 | 1.572364e-49 | 2.451105e-47 |
MsaG034621 | MsaG046137 | 0.833943 | 7.244494e-56 | 2.351096e-53 |
MsaG035144 | MsaG046137 | 0.823901 | 1.908817e-53 | 4.659894e-51 |
MsaG040450 | MsaG046137 | 0.807172 | 9.770683e-50 | 1.558856e-47 |
MsaG041293 | MsaG046137 | 0.802932 | 7.459359e-49 | 1.078012e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046137 | MtrunA17_Chr4g0071811 | 97.179 | 390 | 9 | 2 | 1 | 389 | 1 | 389 | 0.0 | 768 |
MsaG046137 | MtrunA17_Chr2g0298711 | 39.175 | 291 | 137 | 9 | 36 | 308 | 43 | 311 | 9.16e-41 | 146 |
MsaG046137 | MtrunA17_Chr5g0431351 | 47.967 | 123 | 59 | 3 | 262 | 384 | 99 | 216 | 6.45e-25 | 101 |
MsaG046137 | MtrunA17_Chr7g0226451 | 36.364 | 165 | 67 | 5 | 255 | 384 | 190 | 351 | 1.32e-20 | 92.4 |
MsaG046137 | MtrunA17_Chr1g0209861 | 45.614 | 114 | 50 | 4 | 283 | 384 | 311 | 424 | 1.84e-19 | 89.7 |
MsaG046137 | MtrunA17_Chr8g0390971 | 44.444 | 108 | 48 | 1 | 289 | 384 | 293 | 400 | 3.26e-18 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046137 | AT5G57180.2 | 46.563 | 451 | 158 | 19 | 1 | 389 | 1 | 430 | 1.79e-80 | 254 |
MsaG046137 | AT5G57180.1 | 46.136 | 440 | 154 | 19 | 1 | 378 | 1 | 419 | 2.80e-75 | 240 |
MsaG046137 | AT4G25990.1 | 43.632 | 424 | 170 | 18 | 1 | 390 | 1 | 389 | 1.01e-71 | 230 |
MsaG046137 | AT4G25990.2 | 42.141 | 439 | 170 | 19 | 1 | 390 | 1 | 404 | 1.17e-67 | 220 |
MsaG046137 | AT4G25990.3 | 42.961 | 412 | 166 | 18 | 1 | 378 | 1 | 377 | 6.69e-66 | 214 |
MsaG046137 | AT5G57180.3 | 41.837 | 392 | 147 | 19 | 1 | 329 | 1 | 374 | 3.60e-45 | 160 |
MsaG046137 | AT5G57180.4 | 41.837 | 392 | 147 | 19 | 1 | 329 | 1 | 374 | 3.60e-45 | 160 |
MsaG046137 | AT5G14370.1 | 46.903 | 113 | 39 | 4 | 288 | 384 | 229 | 336 | 1.23e-20 | 92.4 |
MsaG046137 | AT1G25440.1 | 38.095 | 147 | 74 | 2 | 252 | 384 | 260 | 403 | 2.73e-20 | 92.4 |
MsaG046137 | AT1G07050.1 | 51.020 | 98 | 41 | 2 | 287 | 384 | 103 | 193 | 9.44e-20 | 87.0 |
MsaG046137 | AT1G73870.1 | 46.491 | 114 | 47 | 3 | 285 | 384 | 274 | 387 | 6.73e-19 | 88.2 |
MsaG046137 | AT1G68520.1 | 38.235 | 136 | 59 | 3 | 267 | 384 | 271 | 399 | 5.74e-18 | 85.5 |
MsaG046137 | AT1G07050.2 | 48.913 | 92 | 40 | 2 | 287 | 378 | 103 | 187 | 1.02e-15 | 75.9 |
MsaG046137 | AT1G49130.1 | 45.361 | 97 | 38 | 2 | 291 | 384 | 236 | 320 | 6.23e-15 | 75.9 |
MsaG046137 | AT1G49130.2 | 45.361 | 97 | 38 | 2 | 291 | 384 | 229 | 313 | 6.23e-15 | 75.5 |
Find 83 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCACCGACACTGCATATTT+TGG | 0.094471 | 8:-80919702 | None:intergenic |
TGACATGGTTTCACCGGTTT+TGG | 0.239666 | 8:-80919383 | None:intergenic |
ATTGATCATACCTTCATTCT+TGG | 0.253571 | 8:-80920914 | None:intergenic |
GATTTATTATTGTTATTGTT+GGG | 0.253877 | 8:-80919245 | None:intergenic |
AGCTTCGTTGTAGGTTTGAT+TGG | 0.274583 | 8:-80919162 | None:intergenic |
TCTCATCCATGGATTGGTTT+TGG | 0.279149 | 8:+80919566 | MsaT046137.1:CDS |
TTGGCGGGAATTTCGATTTC+CGG | 0.294194 | 8:+80919585 | MsaT046137.1:CDS |
TGTCACAAATAGATTTGTTA+TGG | 0.306145 | 8:+80920768 | MsaT046137.1:CDS |
CAATAATAAATCCACCAAAT+TGG | 0.309576 | 8:+80919256 | MsaT046137.1:CDS |
TTGGGATTGGAGAAGAGGTT+TGG | 0.316041 | 8:-80919209 | None:intergenic |
GGATTTATTATTGTTATTGT+TGG | 0.348745 | 8:-80919246 | None:intergenic |
GGGAATTTCGATTTCCGGTT+AGG | 0.348859 | 8:+80919590 | MsaT046137.1:CDS |
GCCATGTTGATGAAGGAAAT+TGG | 0.353307 | 8:+80919642 | MsaT046137.1:CDS |
CAGTCCTGTCTCCGATGCTT+CGG | 0.355046 | 8:+80919904 | MsaT046137.1:CDS |
AATTGAATTACGACGGTGTT+CGG | 0.364551 | 8:+80919843 | MsaT046137.1:CDS |
GGGCTTGCCGTAAAGTAAAA+AGG | 0.371473 | 8:-80919345 | None:intergenic |
AGAAAATCACATATCAAGTT+AGG | 0.372871 | 8:+80920870 | MsaT046137.1:CDS |
AATCATCACCACCATGTTCA+TGG | 0.382343 | 8:+80919033 | MsaT046137.1:CDS |
GTCACAAATAGATTTGTTAT+GGG | 0.395534 | 8:+80920769 | MsaT046137.1:CDS |
TGTGGCAGGGACGATTTGTT+AGG | 0.406234 | 8:+80921651 | MsaT046137.1:intron |
TGGGATTGGAGAAGAGGTTT+GGG | 0.408631 | 8:-80919208 | None:intergenic |
GAGTGTTGCAGCTTCGTTGT+AGG | 0.410073 | 8:-80919171 | None:intergenic |
TCTTCTTCTCATCCATGGAT+TGG | 0.411520 | 8:+80919560 | MsaT046137.1:CDS |
TTTGGCTCCGACTGGAAATC+GGG | 0.427983 | 8:-80919365 | None:intergenic |
GGTTTGGGTATGCAGTGTTA+AGG | 0.430567 | 8:-80919193 | None:intergenic |
GCTTCGTTGTAGGTTTGATT+GGG | 0.439703 | 8:-80919161 | None:intergenic |
TTGTTATGGGAGAATGGAGG+AGG | 0.440896 | 8:+80920782 | MsaT046137.1:CDS |
CACCTCTCTGTAATCCTAAC+CGG | 0.443262 | 8:-80919604 | None:intergenic |
ATAGATTTGTTATGGGAGAA+TGG | 0.448843 | 8:+80920776 | MsaT046137.1:CDS |
GAATGCAGAATTGAAAGAAA+TGG | 0.449165 | 8:+80919787 | MsaT046137.1:CDS |
CATCGGCGAACGGCGTTCCT+CGG | 0.459344 | 8:-80919880 | None:intergenic |
CACCATTGAACTAATCTCTC+CGG | 0.459584 | 8:-80919411 | None:intergenic |
TGGGAGAATGGAGGAGGAAG+TGG | 0.459617 | 8:+80920788 | MsaT046137.1:CDS |
AGTCCTGTCTCCGATGCTTC+GGG | 0.462905 | 8:+80919905 | MsaT046137.1:CDS |
ACGTCTCTTCTTCTCATCCA+TGG | 0.467379 | 8:+80919555 | MsaT046137.1:CDS |
ACGACGGTGTTCGGAAAGCT+TGG | 0.468820 | 8:+80919852 | MsaT046137.1:CDS |
ATTTATTATTGTTATTGTTG+GGG | 0.476105 | 8:-80919244 | None:intergenic |
TGAGGTTGGGATTGGAGAAG+AGG | 0.481484 | 8:-80919214 | None:intergenic |
TTTCCAGTCGGAGCCAAAAC+CGG | 0.481789 | 8:+80919370 | MsaT046137.1:CDS |
TTTCCCGAAGCATCGGAGAC+AGG | 0.498685 | 8:-80919908 | None:intergenic |
GGACTCTGACATGGTTTCAC+CGG | 0.498907 | 8:-80919389 | None:intergenic |
AACATCGTTTCCCGAAGCAT+CGG | 0.505047 | 8:-80919915 | None:intergenic |
GATTCAGAGATTGTTGAAGA+AGG | 0.524561 | 8:-80919083 | None:intergenic |
TCCCGGAGAGATTAGTTCAA+TGG | 0.528675 | 8:+80919409 | MsaT046137.1:CDS |
ACCAATTTCCTTCATCAACA+TGG | 0.530695 | 8:-80919643 | None:intergenic |
CGGTTAGGATTACAGAGAGG+TGG | 0.532921 | 8:+80919605 | MsaT046137.1:CDS |
GAATCGCCAAAGTTGAAAAG+TGG | 0.536005 | 8:+80919809 | MsaT046137.1:CDS |
GCTCTTCGCCATGTTGATGA+AGG | 0.541149 | 8:+80919635 | MsaT046137.1:CDS |
ACCATTGAACTAATCTCTCC+GGG | 0.545916 | 8:-80919410 | None:intergenic |
AGAAGGAATTGATAGCATCA+TGG | 0.548899 | 8:+80919505 | MsaT046137.1:CDS |
GAAGGAATTGATAGCATCAT+GGG | 0.550516 | 8:+80919506 | MsaT046137.1:CDS |
TTCCCGCCAAAACCAATCCA+TGG | 0.558777 | 8:-80919572 | None:intergenic |
CTCGACGAGGAAATTGAAGA+AGG | 0.561335 | 8:+80919488 | MsaT046137.1:CDS |
CGGTGGTAAGACGACGGCGC+CGG | 0.566016 | 8:+80919718 | MsaT046137.1:CDS |
ATCGGAGACAGGACTGTCAT+CGG | 0.567406 | 8:-80919897 | None:intergenic |
GACGTGTCCAATACTCTGAA+AGG | 0.567728 | 8:-80919317 | None:intergenic |
TTCTTTGTAACGCAGCACGC+TGG | 0.571082 | 8:-80920822 | None:intergenic |
AGATCGACGGCCAAGAATGA+AGG | 0.572545 | 8:+80920904 | MsaT046137.1:CDS |
GTGAAACCATGTCAGAGTCC+CGG | 0.575623 | 8:+80919392 | MsaT046137.1:CDS |
AATCACATATCAAGTTAGGA+AGG | 0.579412 | 8:+80920874 | MsaT046137.1:CDS |
GGAACAGGAGGAAGAACCAT+CGG | 0.583201 | 8:+80918990 | MsaT046137.1:CDS |
GAACAGGAGGAAGAACCATC+GGG | 0.586253 | 8:+80918991 | MsaT046137.1:CDS |
ATCTCTCCGGGACTCTGACA+TGG | 0.592091 | 8:-80919398 | None:intergenic |
AGGAGGAAGAACCATCGGGT+TGG | 0.598540 | 8:+80918995 | MsaT046137.1:CDS |
TAAGACGACGGCGCCGGTGA+CGG | 0.606872 | 8:+80919724 | MsaT046137.1:CDS |
CCCAAAATATGCAGTGTCGG+TGG | 0.613838 | 8:+80919701 | MsaT046137.1:CDS |
ACAGGACTGTCATCGGCGAA+CGG | 0.617792 | 8:-80919890 | None:intergenic |
CATCATGGGAGGTAGAATTG+AGG | 0.620329 | 8:+80919520 | MsaT046137.1:CDS |
TCGCCCAAAATATGCAGTGT+CGG | 0.623873 | 8:+80919698 | MsaT046137.1:CDS |
GATTTGTTATGGGAGAATGG+AGG | 0.628311 | 8:+80920779 | MsaT046137.1:CDS |
GGAAGGTCAATGCAGATCGA+CGG | 0.632746 | 8:+80920891 | MsaT046137.1:CDS |
CGGCAAGCCCGATTTCCAGT+CGG | 0.636352 | 8:+80919358 | MsaT046137.1:CDS |
CGCGGAATCAATACTCGACG+AGG | 0.646026 | 8:+80919475 | MsaT046137.1:CDS |
TATATCTAAATCCAACCCGA+TGG | 0.646645 | 8:-80919006 | None:intergenic |
CGGAAAGCTTGGTCTGACCG+AGG | 0.657705 | 8:+80919863 | MsaT046137.1:CDS |
TTTGTGGTGTAGATTGCAAG+CGG | 0.661097 | 8:-80919116 | None:intergenic |
GATGTTCGACTCCATGAACA+TGG | 0.682341 | 8:-80919044 | None:intergenic |
TTGTTGAAATTGAATTACGA+CGG | 0.684346 | 8:+80919836 | MsaT046137.1:CDS |
GGAATTGATAGCATCATGGG+AGG | 0.697923 | 8:+80919509 | MsaT046137.1:CDS |
CAGTGTCGGTGGTAAGACGA+CGG | 0.700394 | 8:+80919712 | MsaT046137.1:CDS |
ATGTTGATGAAGGAAATTGG+TGG | 0.707203 | 8:+80919645 | MsaT046137.1:CDS |
TTCCGGTTAGGATTACAGAG+AGG | 0.714429 | 8:+80919602 | MsaT046137.1:CDS |
GTTCGACTCCATGAACATGG+TGG | 0.820791 | 8:-80919041 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 80918972 | 80921730 | 80918972 | ID=MsaG046137 |
Chr8 | mRNA | 80918972 | 80921730 | 80918972 | ID=MsaT046137.1;Parent=MsaG046137 |
Chr8 | exon | 80918972 | 80919940 | 80918972 | ID=MsaT046137.1.exon1;Parent=MsaT046137.1 |
Chr8 | CDS | 80918972 | 80919940 | 80918972 | ID=cds.MsaT046137.1;Parent=MsaT046137.1 |
Chr8 | exon | 80920761 | 80920925 | 80920761 | ID=MsaT046137.1.exon2;Parent=MsaT046137.1 |
Chr8 | CDS | 80920761 | 80920925 | 80920761 | ID=cds.MsaT046137.1;Parent=MsaT046137.1 |
Chr8 | exon | 80921659 | 80921730 | 80921659 | ID=MsaT046137.1.exon3;Parent=MsaT046137.1 |
Chr8 | CDS | 80921659 | 80921730 | 80921659 | ID=cds.MsaT046137.1;Parent=MsaT046137.1 |
Gene Sequence |
Protein sequence |