AlfalfaGEDB | MsaG046137

M. sativa ssp. caerulea / MsaG046137

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046137	XP_003610054.2	97.179	390	9	2	1	389	1	389	0.0	768

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046137	sp\|Q9LU68\|CIA2_ARATH	46.563	451	158	19	1	389	1	430	1.76e-79	254

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046137	tr\|A0A396IGF5\|A0A396IGF5_MEDTR	97.179	390	9	2	1	389	1	389	0.0	768

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TFs/TRs:

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Gene ID	Type	Classification
MsaG046137	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000116	MsaG046137	0.815570	1.496946e-51	2.935719e-49
MsaG000537	MsaG046137	0.825506	8.021582e-54	2.046154e-51
MsaG000705	MsaG046137	0.822975	3.135148e-53	7.464191e-51
MsaG002133	MsaG046137	0.830500	5.102595e-55	1.497918e-52
MsaG002142	MsaG046137	0.804223	4.038976e-49	6.014116e-47
MsaG002636	MsaG046137	0.810141	2.283696e-50	3.913297e-48
MsaG004010	MsaG046137	0.848390	1.196957e-59	6.140835e-57
MsaG004455	MsaG046137	0.807430	8.622539e-50	1.384135e-47
MsaG004588	MsaG046137	0.808614	4.838921e-50	7.991836e-48
MsaG005275	MsaG046137	0.837583	8.756051e-57	3.170472e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046137	MtrunA17_Chr4g0071811	97.179	390	9	2	1	389	1	389	0.0	768
MsaG046137	MtrunA17_Chr2g0298711	39.175	291	137	9	36	308	43	311	9.16e-41	146
MsaG046137	MtrunA17_Chr5g0431351	47.967	123	59	3	262	384	99	216	6.45e-25	101
MsaG046137	MtrunA17_Chr7g0226451	36.364	165	67	5	255	384	190	351	1.32e-20	92.4
MsaG046137	MtrunA17_Chr1g0209861	45.614	114	50	4	283	384	311	424	1.84e-19	89.7
MsaG046137	MtrunA17_Chr8g0390971	44.444	108	48	1	289	384	293	400	3.26e-18	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046137	AT5G57180.2	46.563	451	158	19	1	389	1	430	1.79e-80	254
MsaG046137	AT5G57180.1	46.136	440	154	19	1	378	1	419	2.80e-75	240
MsaG046137	AT4G25990.1	43.632	424	170	18	1	390	1	389	1.01e-71	230
MsaG046137	AT4G25990.2	42.141	439	170	19	1	390	1	404	1.17e-67	220
MsaG046137	AT4G25990.3	42.961	412	166	18	1	378	1	377	6.69e-66	214
MsaG046137	AT5G57180.3	41.837	392	147	19	1	329	1	374	3.60e-45	160
MsaG046137	AT5G57180.4	41.837	392	147	19	1	329	1	374	3.60e-45	160
MsaG046137	AT5G14370.1	46.903	113	39	4	288	384	229	336	1.23e-20	92.4
MsaG046137	AT1G25440.1	38.095	147	74	2	252	384	260	403	2.73e-20	92.4
MsaG046137	AT1G07050.1	51.020	98	41	2	287	384	103	193	9.44e-20	87.0

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Find 83 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATCGTTTCCCGAAGCAT+CGG	0.505047	8:-80919915	None:intergenic
AATCACATATCAAGTTAGGA+AGG	0.579412	8:+80920874	MsaT046137.1:CDS
AATCATCACCACCATGTTCA+TGG	0.382343	8:+80919033	MsaT046137.1:CDS
AATTGAATTACGACGGTGTT+CGG	0.364551	8:+80919843	MsaT046137.1:CDS
ACAGGACTGTCATCGGCGAA+CGG	0.617792	8:-80919890	None:intergenic
ACCAATTTCCTTCATCAACA+TGG	0.530695	8:-80919643	None:intergenic
ACCACCGACACTGCATATTT+TGG	0.094471	8:-80919702	None:intergenic
ACCATTGAACTAATCTCTCC+GGG	0.545916	8:-80919410	None:intergenic
ACGACGGTGTTCGGAAAGCT+TGG	0.468820	8:+80919852	MsaT046137.1:CDS
ACGTCTCTTCTTCTCATCCA+TGG	0.467379	8:+80919555	MsaT046137.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	80918972	80921730	80918972	ID=MsaG046137
Chr8	mRNA	80918972	80921730	80918972	ID=MsaT046137.1;Parent=MsaG046137
Chr8	exon	80918972	80919940	80918972	ID=MsaT046137.1.exon1;Parent=MsaT046137.1
Chr8	CDS	80918972	80919940	80918972	ID=cds.MsaT046137.1;Parent=MsaT046137.1
Chr8	exon	80920761	80920925	80920761	ID=MsaT046137.1.exon2;Parent=MsaT046137.1
Chr8	CDS	80920761	80920925	80920761	ID=cds.MsaT046137.1;Parent=MsaT046137.1
Chr8	exon	80921659	80921730	80921659	ID=MsaT046137.1.exon3;Parent=MsaT046137.1
Chr8	CDS	80921659	80921730	80921659	ID=cds.MsaT046137.1;Parent=MsaT046137.1

Gene Sequence

>MsaT046137.1

ATGTCTTCGTGTTTTAGTGGAACAGGAGGAAGAACCATCGGGTTGGATTTAGATATAGTTAAATCATCACCACCATGTTCATGGAGTCGAACATCACAAACATCTTCTTCACCTTCTTCAACAATCTCTGAATCAAGCAATTCACCGCTTGCAATCTACACCACAAAACCCAGAACCCCAAGAAAACGACCCAATCAAACCTACAACGAAGCTGCAACACTCCTTAACACTGCATACCCAAACCTCTTCTCCAATCCCAACCTCAAAACAAACCCCAACAATAACAATAATAAATCCACCAAATTGGAAAAAGCTTATGAATTCGACTCTTCTGAACTTCTTTTACCTTTCAGAGTATTGGACACGTCATCATCCTTTTTACTTTACGGCAAGCCCGATTTCCAGTCGGAGCCAAAACCGGTGAAACCATGTCAGAGTCCCGGAGAGATTAGTTCAATGGTGAATTGTCTTGAATTGAACGATGATGATGATGATGATTTTGACGCGGAATCAATACTCGACGAGGAAATTGAAGAAGGAATTGATAGCATCATGGGAGGTAGAATTGAGGAGAATGAATCTAACGTCTCTTCTTCTCATCCATGGATTGGTTTTGGCGGGAATTTCGATTTCCGGTTAGGATTACAGAGAGGTGGAGTGAGAGCTCTTCGCCATGTTGATGAAGGAAATTGGTGGAATTTTCCGGCGGTTGATATGCTTAAAATTTCGCCCAAAATATGCAGTGTCGGTGGTAAGACGACGGCGCCGGTGACGGAGAAGAAGAAAAAGAAGAAGGTTGTTGCGGTAGAGAGATTGAATGCAGAATTGAAAGAAATGGAATCGCCAAAGTTGAAAAGTGGATTGTTGTTGAAATTGAATTACGACGGTGTTCGGAAAGCTTGGTCTGACCGAGGAACGCCGTTCGCCGATGACAGTCCTGTCTCCGATGCTTCGGGAAACGATGTTAATGCACGGTTGTCACAAATAGATTTGTTATGGGAGAATGGAGGAGGAAGTGGTGTAAGAGAAGCCAGCGTGCTGCGTTACAAAGAAAAGCGTCGTACACGCCTCATCTCTAAGAAAATCACATATCAAGTTAGGAAGGTCAATGCAGATCGACGGCCAAGAATGAAGGGACGATTTGTTAGGAGACTCAATGCTAACTCAATGCTAGCTCAAATGCACACAAATGATAGTAGTTTTTAG

Protein sequence

>MsaT046137.1

MSSCFSGTGGRTIGLDLDIVKSSPPCSWSRTSQTSSSPSSTISESSNSPLAIYTTKPRTPRKRPNQTYNEAATLLNTAYPNLFSNPNLKTNPNNNNNKSTKLEKAYEFDSSELLLPFRVLDTSSSFLLYGKPDFQSEPKPVKPCQSPGEISSMVNCLELNDDDDDDFDAESILDEEIEEGIDSIMGGRIEENESNVSSSHPWIGFGGNFDFRLGLQRGGVRALRHVDEGNWWNFPAVDMLKISPKICSVGGKTTAPVTEKKKKKKVVAVERLNAELKEMESPKLKSGLLLKLNYDGVRKAWSDRGTPFADDSPVSDASGNDVNARLSQIDLLWENGGGSGVREASVLRYKEKRRTRLISKKITYQVRKVNADRRPRMKGRFVRRLNANSMLAQMHTNDSSF*