AlfalfaGEDB | MsaG046163

M. sativa ssp. caerulea / MsaG046163

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046163	CAT79815.1	98.480	329	5	0	1	329	1	329	0.0	673

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046163	sp\|Q5XF57\|Y5576_ARATH	54.704	287	130	0	48	334	249	535	2.16e-117	353

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046163	tr\|C1L342\|C1L342_MEDTR	98.480	329	5	0	1	329	1	329	0.0	673

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000253	MsaG046163	0.800690	2.141929e-48	2.941640e-46
MsaG000315	MsaG046163	0.811144	1.389948e-50	2.440827e-48
MsaG000566	MsaG046163	0.843829	2.057920e-58	9.074080e-56
MsaG000681	MsaG046163	0.831573	2.791244e-55	8.452279e-53
MsaG001045	MsaG046163	0.820452	1.193573e-52	2.656781e-50
MsaG002298	MsaG046163	0.831986	2.209500e-55	6.772162e-53
MsaG002810	MsaG046163	0.825465	8.202576e-54	2.089898e-51
MsaG003267	MsaG046163	0.814124	3.120333e-51	5.900381e-49
MsaG003517	MsaG046163	0.827285	3.036718e-54	8.139514e-52
MsaG003738	MsaG046163	0.801450	1.500627e-48	2.096496e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046163	MtrunA17_Chr4g0072221	98.176	329	6	0	1	329	1	329	0.0	672
MsaG046163	MtrunA17_Chr4g0072891	60.345	290	113	1	47	334	246	535	2.43e-132	389
MsaG046163	MtrunA17_Chr5g0412141	58.333	288	116	3	48	333	120	405	7.03e-118	348
MsaG046163	MtrunA17_Chr1g0196381	57.292	288	120	3	46	333	99	383	1.85e-117	345
MsaG046163	MtrunA17_Chr2g0286821	54.355	287	129	2	43	329	104	388	1.86e-116	344
MsaG046163	MtrunA17_Chr8g0367241	51.911	314	144	4	25	333	122	433	3.98e-109	326
MsaG046163	MtrunA17_Chr1g0191381	55.274	237	105	1	48	284	135	370	2.56e-94	285
MsaG046163	MtrunA17_Chr3g0125281	43.366	309	162	7	35	333	374	679	5.03e-79	256
MsaG046163	MtrunA17_Chr4g0036981	46.690	287	141	5	52	329	287	570	1.75e-78	252
MsaG046163	MtrunA17_Chr5g0413511	44.211	285	147	5	54	329	47	328	2.14e-77	242

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046163	AT2G18890.3	69.760	334	95	4	1	329	1	333	4.13e-173	484
MsaG046163	AT2G18890.1	69.461	334	96	4	1	329	1	333	1.10e-171	483
MsaG046163	AT2G18890.2	70.370	270	74	4	1	265	1	269	1.84e-139	396
MsaG046163	AT5G57670.2	54.704	287	130	0	48	334	249	535	2.20e-118	353
MsaG046163	AT5G65530.1	53.774	318	138	5	18	333	102	412	3.40e-117	346
MsaG046163	AT5G18910.1	53.901	282	128	2	48	329	174	453	5.35e-115	343
MsaG046163	AT3G05140.1	50.153	327	162	1	8	334	85	410	5.75e-112	333
MsaG046163	AT3G05140.2	50.153	327	162	1	8	334	133	458	1.62e-111	333
MsaG046163	AT5G10520.1	51.948	308	139	5	34	333	115	421	1.57e-110	330
MsaG046163	AT5G35960.2	54.480	279	125	2	52	330	120	396	2.60e-109	324

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Find 67 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGATGTATTTGCTTT+TGG	0.354449	8:-81270886	MsaT046163.1:CDS
AAAGTATACCTCAGTCATGG+AGG	0.642170	8:+81270242	None:intergenic
AACTTTGTCAAAGACCAACA+TGG	0.658701	8:-81271904	MsaT046163.1:CDS
AAGAAAGTATACCTCAGTCA+TGG	0.573647	8:+81270239	None:intergenic
AAGTATACCTCAGTCATGGA+GGG	0.649085	8:+81270243	None:intergenic
AATAATCCATAGAGATATCA+AGG	0.488896	8:-81271254	MsaT046163.1:CDS
ACAAGACATAAAATAGTTGT+TGG	0.453944	8:-81271322	MsaT046163.1:CDS
ACTCAATTGCTCCAATAGAA+GGG	0.595821	8:-81271053	MsaT046163.1:CDS
ACTCCATGCAAGTAGTATTC+TGG	0.390568	8:+81270919	None:intergenic
ACTTGCACAAAGGTTGCAAG+AGG	0.649378	8:-81271279	MsaT046163.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	81270224	81272056	81270224	ID=MsaG046163
Chr8	mRNA	81270224	81272056	81270224	ID=MsaT046163.1;Parent=MsaG046163
Chr8	exon	81270224	81270400	81270224	ID=MsaT046163.1.exon6;Parent=MsaT046163.1
Chr8	CDS	81270224	81270400	81270224	ID=cds.MsaT046163.1;Parent=MsaT046163.1
Chr8	exon	81270816	81270951	81270816	ID=MsaT046163.1.exon5;Parent=MsaT046163.1
Chr8	CDS	81270816	81270951	81270816	ID=cds.MsaT046163.1;Parent=MsaT046163.1
Chr8	exon	81271045	81271124	81271045	ID=MsaT046163.1.exon4;Parent=MsaT046163.1
Chr8	CDS	81271045	81271124	81271045	ID=cds.MsaT046163.1;Parent=MsaT046163.1
Chr8	exon	81271216	81271373	81271216	ID=MsaT046163.1.exon3;Parent=MsaT046163.1
Chr8	CDS	81271216	81271373	81271216	ID=cds.MsaT046163.1;Parent=MsaT046163.1
Chr8	exon	81271489	81271743	81271489	ID=MsaT046163.1.exon2;Parent=MsaT046163.1
Chr8	CDS	81271489	81271743	81271489	ID=cds.MsaT046163.1;Parent=MsaT046163.1
Chr8	exon	81271852	81272056	81271852	ID=MsaT046163.1.exon1;Parent=MsaT046163.1
Chr8	CDS	81271852	81272056	81271852	ID=cds.MsaT046163.1;Parent=MsaT046163.1

Gene Sequence

>MsaT046163.1

ATGAGGTATATAAGAACAGGCAGCTTCAAGAGGCTCTTCTCATTTAGCAAACGTGGTTTAGGGGAACCAGTTCTGAGTCCCAAAGGTGAAGAAAACGATAAGAGCTTGAAGATTCTTCCATATGAAGAAGAACTTTGTCAAAGACCAACATGGAAATGTTTCTCTTATGAAGAGTTGTTTGATGCTACCAATGGCTTCAACTCAGAAAATATGGTTGGAAAAGGTGGTTATGCTGAGGTTTACAAGGGAACATTGAAAAATGGTGAAGAAATTGCTGTGAAGAGATTAACAAGAGCTTCAAAGGATGAAAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGAACAATTGGTCATGTTCGTCATTCCAATGTTTTGTCTCTTCTAGGATGTTGTATTGACAATGGACTTTACTTTGTTTTTGAACTATCTACAACTGGTTCTGTTTCATCTATTCTTCATGATGAAAAATTGGCTCCTTTAGATTGGAAAACAAGACATAAAATAGTTGTTGGGACAGCGCGTGGACTTCACTACTTGCACAAAGGTTGCAAGAGGAGAATAATCCATAGAGATATCAAGGCATCAAACATTTTATTGACAAAAGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCACAATGGACTCATCACTCAATTGCTCCAATAGAAGGGACATTTGGACATTTGGCACCAGAATACTACTTGCATGGAGTTGTGGATGAGAAAACAGATGTATTTGCTTTTGGTGTGTTCTTGCTAGAAGTCATTTCTGGTAGGAAACCTGTGGATGTGTCTCACCAAAGTTTACATAGCTGGGCAAAACCAATTTTGAACAAAGGTGACATAGAAGAGCTGGTAGATGCAAGGCTTGAAGGAGCTTATGATGTAACACAGTTAAAGAGACTTGCCTTTGCTGCCTCTCTATGCATCCGGGCATCTTCCACTTGGCGACCCTCCATGACTGAGGTATACTTTCTTTTTGTCTTAGATTAA

Protein sequence

>MsaT046163.1

MRYIRTGSFKRLFSFSKRGLGEPVLSPKGEENDKSLKILPYEEELCQRPTWKCFSYEELFDATNGFNSENMVGKGGYAEVYKGTLKNGEEIAVKRLTRASKDERKEKEFLTEIGTIGHVRHSNVLSLLGCCIDNGLYFVFELSTTGSVSSILHDEKLAPLDWKTRHKIVVGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDVSHQSLHSWAKPILNKGDIEELVDARLEGAYDVTQLKRLAFAASLCIRASSTWRPSMTEVYFLFVLD*