AlfalfaGEDB | MsaG046208

M. sativa ssp. caerulea / MsaG046208

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF00564.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046208	XP_003610160.4	97.232	1084	30	0	1	1084	25	1108	0.0	2185

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046208	sp\|Q9C9U5\|SIS8_ARATH	39.405	269	146	6	817	1082	754	1008	3.96e-48	190

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046208	tr\|A0A396ILN3\|A0A396ILN3_MEDTR	97.232	1084	30	0	1	1084	25	1108	0.0	2185

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046208	MtrunA17_Chr4g0072741	97.232	1084	30	0	1	1084	25	1108	0.0	2185
MsaG046208	MtrunA17_Chr2g0310761	56.039	414	161	6	680	1081	805	1209	9.46e-147	471
MsaG046208	MtrunA17_Chr2g0310761	50.694	144	64	2	27	163	168	311	1.90e-31	134
MsaG046208	MtrunA17_Chr6g0461841	67.702	322	101	2	765	1084	920	1240	9.21e-144	463
MsaG046208	MtrunA17_Chr6g0461841	47.771	157	75	2	10	159	170	326	1.93e-31	134
MsaG046208	MtrunA17_Chr2g0310781	58.989	356	129	3	735	1081	768	1115	4.29e-141	453
MsaG046208	MtrunA17_Chr2g0310781	48.951	143	71	2	16	156	139	281	1.87e-31	133
MsaG046208	MtrunA17_Chr1g0196631	58.065	372	149	3	720	1084	802	1173	2.70e-140	452
MsaG046208	MtrunA17_Chr1g0196631	53.398	103	48	0	26	128	192	294	1.91e-28	124
MsaG046208	MtrunA17_Chr2g0305141	72.695	282	77	0	803	1084	1075	1356	3.82e-140	456

Showing 1 to 10 of 507 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046208	AT5G57610.1	52.424	1114	402	29	22	1084	18	1054	0.0	1017
MsaG046208	AT3G24715.1	71.821	291	82	0	794	1084	819	1109	8.49e-144	461
MsaG046208	AT3G24715.1	44.094	127	68	1	27	153	175	298	1.97e-23	108
MsaG046208	AT3G24715.3	71.821	291	82	0	794	1084	819	1109	8.49e-144	461
MsaG046208	AT3G24715.3	44.094	127	68	1	27	153	175	298	1.97e-23	108
MsaG046208	AT3G24715.2	71.821	291	82	0	794	1084	819	1109	8.49e-144	461
MsaG046208	AT3G24715.2	44.094	127	68	1	27	153	175	298	1.97e-23	108
MsaG046208	AT1G79570.2	72.500	280	77	0	802	1081	955	1234	1.74e-143	463
MsaG046208	AT1G79570.2	47.297	148	74	2	14	159	165	310	9.09e-31	132
MsaG046208	AT1G79570.1	72.500	280	77	0	802	1081	955	1234	1.74e-143	463

Showing 1 to 10 of 518 entries

Previous1 2 3 4 5…52Next

Find 312 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGGGAGCTGTATGA+AGG	0.570720	8:+81738879	MsaT046208.1:CDS
AAACAACACACTCTAGTGTC+AGG	0.539743	8:+81742316	MsaT046208.1:CDS
AACAACAGAAGCAGCGGTGT+TGG	0.471036	8:-81740695	None:intergenic
AACACACTCTAGTGTCAGGA+GGG	0.605131	8:+81742320	MsaT046208.1:CDS
AACCGGTTGATGAACATGAT+TGG	0.473193	8:-81739975	None:intergenic
AACCGGTTGGACCTGAATTG+GGG	0.524318	8:+81739990	MsaT046208.1:CDS
AACGTTGTTTGGTTGCCTAC+TGG	0.395575	8:+81739575	MsaT046208.1:CDS
AACTTCCCATCTTGTGGACG+TGG	0.587859	8:-81738786	None:intergenic
AACTTTGGAGCATTTGCATG+AGG	0.569354	8:-81740373	None:intergenic
AAGCAATATGGTGTCAGAAA+AGG	0.518988	8:+81742390	MsaT046208.1:CDS

Showing 1 to 10 of 312 entries

Previous1 2 3 4 5…32Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	81738669	81742933	81738669	ID=MsaG046208
Chr8	mRNA	81738669	81742933	81738669	ID=MsaT046208.1;Parent=MsaG046208
Chr8	exon	81738669	81740975	81738669	ID=MsaT046208.1.exon1;Parent=MsaT046208.1
Chr8	CDS	81738669	81740975	81738669	ID=cds.MsaT046208.1;Parent=MsaT046208.1
Chr8	exon	81741091	81741195	81741091	ID=MsaT046208.1.exon2;Parent=MsaT046208.1
Chr8	CDS	81741091	81741195	81741091	ID=cds.MsaT046208.1;Parent=MsaT046208.1
Chr8	exon	81741313	81741465	81741313	ID=MsaT046208.1.exon3;Parent=MsaT046208.1
Chr8	CDS	81741313	81741465	81741313	ID=cds.MsaT046208.1;Parent=MsaT046208.1
Chr8	exon	81741727	81741890	81741727	ID=MsaT046208.1.exon4;Parent=MsaT046208.1
Chr8	CDS	81741727	81741890	81741727	ID=cds.MsaT046208.1;Parent=MsaT046208.1
Chr8	exon	81742013	81742160	81742013	ID=MsaT046208.1.exon5;Parent=MsaT046208.1
Chr8	CDS	81742013	81742160	81742013	ID=cds.MsaT046208.1;Parent=MsaT046208.1
Chr8	exon	81742289	81742411	81742289	ID=MsaT046208.1.exon6;Parent=MsaT046208.1
Chr8	CDS	81742289	81742411	81742289	ID=cds.MsaT046208.1;Parent=MsaT046208.1
Chr8	exon	81742504	81742591	81742504	ID=MsaT046208.1.exon7;Parent=MsaT046208.1
Chr8	CDS	81742504	81742591	81742504	ID=cds.MsaT046208.1;Parent=MsaT046208.1
Chr8	exon	81742767	81742933	81742767	ID=MsaT046208.1.exon8;Parent=MsaT046208.1
Chr8	CDS	81742767	81742933	81742767	ID=cds.MsaT046208.1;Parent=MsaT046208.1

Gene Sequence

>MsaT046208.1

ATGATGATGGATAGTCCCACAGCCATTAGATCACCGGCCACCACCGGTTCGGGTTCCGGTTCGAACGATGATGGTCGGCGTGTTAAATTTTTGTGTAGCTTTCTAGGTAGCATAATGCCACGTCCACAAGATGGGAAGTTACGTTATGTAGGTGGAGAGACACGAATTGTGAGTGTTTCTAGGGATATTAGTTTTGAGGAGTTGATGGGGAAAATGAGGGAGCTGTATGAAGGTGTTGCTGTGTTGAAGTATCAACAACCTGATGAAGATCTTGATGCACTTGTTTCTGTTGTTAATGATGATGATGTGGTTAATATGATGGAAGAGTATGATAAGTTGGGTTCTGGAGATGGGTTCACTAGGCTTAGGATTTTCATGTTTTCGCAATTGGAGCAAGATGGTTCGGCACATTTCATTGATGGGGATGATCCTGAGAGGAGGTATGTGGATGCATTGAATAGTTTGAATGATGCTTCTGAGTTAAGGAGGTTGCAACAGATGGAGTTTCCATTGATTGGTACTGTTGAGGATATCCATGTGGGTGATCAGTACATTAGTCCGGTTGGTATGGAAAATGGGATTCTTAGTCAGAGAAGTGGGGAGCTAGCTATGTCACAATATGGTTTGCATCATATGCCTATTCAGCATCAGCAACCTATGGGCCAGCGGTATAATGAAATCGATGTTCCGTGGAATTCTGGTTATTACTCTCCTAGGCATCACGGTCAGTGTCACCATGATTCTAGAACATCATTGGTTGAGTATCCGTCTTCACCTTCTGGTGCAAGGTACCGAATGCCGTTTCCTGAGATGCCAGATAAGGGAATTGATAGAGTGTCGGACGAGTATGCTCGACATCACGTAAACCACCATCCTGTGTATGATAATCAACCGCAGTATCCGGAAAACGTTGTTTGGTTGCCTACTGGACCAGCACATGGTGGTGATAAGTCTGGTTTTCCAGGCAACGTTCTTCATGGCTCCCATGCTCTTGATGGGAATAATATATGCGAGCACTGTCGTATGAGTTTTCAGAGGCCTCAACCACATCTGGAGCATCCTAATATGCTTCCACCTGTTGCCATTCCATGTCCAGAATGTCATTCAAGCAGGGATGCTCTCATAGTGAATGCTGATGCCAAGTTACAACCTCCTATGTATCCCAATGATACTCAGAATCATGAGAGAGGATGTGGTTTGCAGCATCAAAATTCTGGAAGAGTGGGTGATCATTATGTTGGTGATGTTCCTATCATTAGTTTCTCTCCCGGACATGGTAGTATGATTGATGGACATGCTCTTCCTTCCAATCATGTTCATCAACCGGTTGGACCTGAATTGGGGGTTGAACTGTTCCCTGACCAAACCATGGCTGCTATACCGCATCTAAAAATTCCTCCACCGGAAGAATCCAGTGTGCAGTATGGAAATCCACCTTCTCCTTATGGAGTAGATAATAACTGTGCCATGCCTCGTGGACAAGCACCCGGTTATACTCTCTGGAGAAACGGGCCGACTCCGGTTCATATTGGACCACCGCATGAGGCAACTACGCTACCTCAGCCGGTTGATGGTGTGATAAATGCTGGAATAATGAGGGGAGAGGGCAGTCCAGGATTTTTTGTTGGACCAGATAGTCAAAGTCTTTGGGTTGATTCCTCACAGAAATTTTCAGGTCATGATGGGTCAGCCACCCCAGAATACCCTCATGCAAATGCTCCAAAGTTGAATCCAATGGCTATTGGTCAGGAAAATCCACACCCGATTATTGTAGATGCCATCCATCCTCTGCAGGATGTAAACGCTAGTACCTACTTGGAACCTGTGCAGCTGCAAAAATCTTCATTTCATATGGTTCACAATAATGGGGTTTTAAAAAATGATGCTCATTTGACTGAAGGGATTAGTTTGCAATCTATAAGTTTGCTTGGAGAAAAACAAGAAGCAAAAAAAGAGGGTACAGTTGAAAAATCTAATGTGCAAAGTATATCTTTTCCGGAACAAAATCAAATTGTTGGAGATGTATCCAACACCGCTGCTTCTGTTGTTGAATGTGATAATTCATTTTCGAAACCTGCATCAGGGTGTGAACATGGCAAGAAAGTGGCTGATAAGGGTTGTTCTGCTCCTGAAGATTCTAAAGGTTTAGTTGATCAATTTAATATCTTGCCTGAGTTGATTGCTTCTGTTAAAAAGGCTGCGTTAGAATGCCAAGACGAGGTGAAACCTACAGTTAAAGAGAATGCCAATTGCCAGATGGACAATTCGAATACCAAAGAAGAAAAGGCGAATGAAGTTGAACCAGTGAATGTTCATGGTGATTTAGAACTGGACTCCGAAAACGACCGTGTTGATACTTCTAAAATCGAGCCTACGAAGGCTGAGGCAGAAGCAATTGCCAGGGGATTGCAGACGATTAAAAATGATGATTTGGAGGAGATCCGTGAGCTAGGTTCTGGAACTTATGGAGCTGTTTATCATGGGAAGTGGAAAGGTTCTGATGTCGCCATTAAGAGAATAAAAGCTAGTTGTTTTGCTGGAAGACCATCCGAAAGAGCAAGATTGATTGCCGATTTCTGGAAGGAGGCATTGATGCTTAGTTCATTGCATCATCCAAATGTTGTCTCTTTCTATGGTATTGTTCGTGATGGCCCTGATGGCTCTTTAGCTACAGTGACAGAATTCATGGTTAATGGATCTTTGAAACAGTTCTTGCATAAGAAGGACAGAACGATAGATCGACGGAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAGAACATTGTTCATTTTGATTTGAAATGCGAGAATCTATTGGTAAATATGAGAGATCCACAAAGGCCTGTCTGCAAGATTGGTGATTTGGGTCTATCAAAGGTTAAACAACACACTCTAGTGTCAGGAGGGGTACGCGGAACTTTGCCGTGGATGGCACCTGAACTTCTTAGCGGGAAAAGCAATATGGTGTCAGAAAAGATTGATGTTTACTCGTTCGGGATAGTCATGTGGGAATTACTCACTGGCGATGAACCTTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACACTTTACGTCCACAAATCCCTACATGGTGTGATCCTGAGTGGAAATCTCTCATGGAAAGTTCTTGGGCTTCTGATCCTGTAGAAAGACCATCATTTTCAGAAATTTCCAAGAAGCTGAGAAGTATGGCTGCTTCAGTGAATGTGAAATAG

Protein sequence

>MsaT046208.1

MMMDSPTAIRSPATTGSGSGSNDDGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVSRDISFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFMFSQLEQDGSAHFIDGDDPERRYVDALNSLNDASELRRLQQMEFPLIGTVEDIHVGDQYISPVGMENGILSQRSGELAMSQYGLHHMPIQHQQPMGQRYNEIDVPWNSGYYSPRHHGQCHHDSRTSLVEYPSSPSGARYRMPFPEMPDKGIDRVSDEYARHHVNHHPVYDNQPQYPENVVWLPTGPAHGGDKSGFPGNVLHGSHALDGNNICEHCRMSFQRPQPHLEHPNMLPPVAIPCPECHSSRDALIVNADAKLQPPMYPNDTQNHERGCGLQHQNSGRVGDHYVGDVPIISFSPGHGSMIDGHALPSNHVHQPVGPELGVELFPDQTMAAIPHLKIPPPEESSVQYGNPPSPYGVDNNCAMPRGQAPGYTLWRNGPTPVHIGPPHEATTLPQPVDGVINAGIMRGEGSPGFFVGPDSQSLWVDSSQKFSGHDGSATPEYPHANAPKLNPMAIGQENPHPIIVDAIHPLQDVNASTYLEPVQLQKSSFHMVHNNGVLKNDAHLTEGISLQSISLLGEKQEAKKEGTVEKSNVQSISFPEQNQIVGDVSNTAASVVECDNSFSKPASGCEHGKKVADKGCSAPEDSKGLVDQFNILPELIASVKKAALECQDEVKPTVKENANCQMDNSNTKEEKANEVEPVNVHGDLELDSENDRVDTSKIEPTKAEAEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESSWASDPVERPSFSEISKKLRSMAASVNVK*