AlfalfaGEDB | MsaG046247

M. sativa ssp. caerulea / MsaG046247

KEGG: -
GO: -
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046247	XP_003610239.2	93.962	265	16	0	1	265	1	265	0.0	516

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046247	tr\|G7JEC2\|G7JEC2_MEDTR	93.962	265	16	0	1	265	1	265	0.0	516

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TFs/TRs:

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Gene ID	Type	Classification
MsaG046247	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG046247	0.821810	5.826841e-53	1.344419e-50
MsaG000011	MsaG046247	0.807574	8.038177e-50	1.294753e-47
MsaG000024	MsaG046247	0.800641	2.191689e-48	3.006629e-46
MsaG000045	MsaG046247	0.865083	1.525861e-64	1.446377e-61
MsaG000078	MsaG046247	0.800310	2.557896e-48	3.482680e-46
MsaG000083	MsaG046247	0.810570	1.847102e-50	3.198498e-48
MsaG000117	MsaG046247	0.903426	8.209650e-79	5.146033e-75
MsaG000128	MsaG046247	0.867752	2.189814e-65	2.312294e-62
MsaG000179	MsaG046247	0.841817	7.012309e-58	2.898977e-55
MsaG000180	MsaG046247	0.833981	7.090032e-56	2.303572e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046247	MtrunA17_Chr4g0073171	93.962	265	16	0	1	265	1	265	0.0	516
MsaG046247	MtrunA17_Chr2g0300621	29.255	188	108	5	58	236	106	277	8.02e-13	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046247	AT4G28030.1	64.407	236	84	0	27	262	31	266	1.16e-112	325
MsaG046247	AT4G28030.2	60.593	236	82	1	27	262	31	255	2.20e-101	296
MsaG046247	AT2G06025.1	30.481	187	107	4	58	236	95	266	3.93e-16	76.6
MsaG046247	AT2G06025.6	30.481	187	107	4	58	236	95	266	3.93e-16	76.6
MsaG046247	AT2G06025.4	30.481	187	107	4	58	236	95	266	3.93e-16	76.6

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Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCAGTTGCTCGTAATT+GGG	0.384466	8:+82388457	MsaT046247.1:CDS
AAGAAATTGTACATGAAGAG+CGG	0.548993	8:+82390347	MsaT046247.1:CDS
AAGAACATAAATCATCATAG+AGG	0.592116	8:-82387683	None:intergenic
AAGTCAGTTGCTCGTAATTG+GGG	0.584670	8:+82388458	MsaT046247.1:CDS
AATGGAGAAGATGAATGAAT+TGG	0.432279	8:-82387177	None:intergenic
AATTGTAGGGATGAAGCCAG+AGG	0.725736	8:+82387911	MsaT046247.1:CDS
ACGTGAGTTTGAAGCACTTA+AGG	0.420143	8:+82387581	MsaT046247.1:CDS
ACTTGGACTCCGTAAGTGTC+TGG	0.451152	8:-82387384	None:intergenic
AGAAACCTTGCCTGCCATGC+AGG	0.496588	8:-82390392	None:intergenic
AGAAATTGTACATGAAGAGC+GGG	0.527874	8:+82390348	MsaT046247.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	82387144	82390463	82387144	ID=MsaG046247
Chr8	mRNA	82387144	82390463	82387144	ID=MsaT046247.1;Parent=MsaG046247
Chr8	exon	82387144	82387404	82387144	ID=MsaT046247.1.exon1;Parent=MsaT046247.1
Chr8	CDS	82387144	82387404	82387144	ID=cds.MsaT046247.1;Parent=MsaT046247.1
Chr8	exon	82387558	82387713	82387558	ID=MsaT046247.1.exon2;Parent=MsaT046247.1
Chr8	CDS	82387558	82387713	82387558	ID=cds.MsaT046247.1;Parent=MsaT046247.1
Chr8	exon	82387837	82387932	82387837	ID=MsaT046247.1.exon3;Parent=MsaT046247.1
Chr8	CDS	82387837	82387932	82387837	ID=cds.MsaT046247.1;Parent=MsaT046247.1
Chr8	exon	82388359	82388479	82388359	ID=MsaT046247.1.exon4;Parent=MsaT046247.1
Chr8	CDS	82388359	82388479	82388359	ID=cds.MsaT046247.1;Parent=MsaT046247.1
Chr8	exon	82390300	82390463	82390300	ID=MsaT046247.1.exon5;Parent=MsaT046247.1
Chr8	CDS	82390300	82390463	82390300	ID=cds.MsaT046247.1;Parent=MsaT046247.1

Gene Sequence

>MsaT046247.1

ATGACACTCATTTCTTCACTCTGTTCTTTTCCTCCAATTCATTCATCTTCTCCATTTTCAAATTCTGCATTAACATGTTCAACTTCTAACCTTAGAACTCCAATCCAATCCTCTGCTTTTTCTACAAACATTTGCACCCAAAAAATCGACACCTCTTTGATCACAATCGCTGAATCTTTCTACGATGATGAATTCTGGGCTGCTTCCTCTCTTCGTGTTCGTTCCTTCAACCAATTTCGTCCAGACACTTACGGAGTCCAAGATCATGTTAAGTACTTGGCTGAACGTGAGTTTGAAGCACTTAAGGAGCGTGTTTCAGGGAAAAAGACGGGCTTTAGAAGAGTTTCTTGCATAAATGCTTCTCTTCCTATGTCACATTTATCTAGCCTCTATGATGATTTATGTTCTTCATGTAAGTATTCTGCCAGTGGAGAAGACAGGGTTGTAGTTGGTTCTCTTGATCTTAATCAGTGCTTGAGTCTTCCTGATGAAATTGTAGGGATGAAGCCAGAGGCTAGTGGAGCTGATACTACAAGGGCGTATCTTAGTAATGTATGTGTTGCTAGAGAGTTGCACAGAAATGGGTTGGCATATGAACTTCTTGAAAAGTCAAAGTCAGTTGCTCGTAATTGGGGCATAACAGATTTGTACGTCCATGTTGCCGTTGACAATGAACCAGCAAAGAAATTGTACATGAAGAGCGGGTTTGTTTATGAGAGTGATGAACCTGCATGGCAGGCAAGGTTTCTTGATCGACCGCGAAGACTTCTGCTATGGATGGGTCTTTCAATCACCTAA

Protein sequence

>MsaT046247.1

MTLISSLCSFPPIHSSSPFSNSALTCSTSNLRTPIQSSAFSTNICTQKIDTSLITIAESFYDDEFWAASSLRVRSFNQFRPDTYGVQDHVKYLAEREFEALKERVSGKKTGFRRVSCINASLPMSHLSSLYDDLCSSCKYSASGEDRVVVGSLDLNQCLSLPDEIVGMKPEASGADTTRAYLSNVCVARELHRNGLAYELLEKSKSVARNWGITDLYVHVAVDNEPAKKLYMKSGFVYESDEPAWQARFLDRPRRLLLWMGLSIT*