AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046331

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046331 MtrunA17_Chr4g0074101 84.694 196 13 1 1 179 1 196 5.10e-116 327
MsaG046331 MtrunA17_Chr1g0169761 82.682 179 31 0 1 179 1 179 1.15e-109 310
MsaG046331 MtrunA17_Chr8g0376821 85.629 167 24 0 1 167 1 167 8.42e-104 295
MsaG046331 MtrunA17_Chr1g0180591 77.654 179 40 0 1 179 1 179 1.50e-99 285
MsaG046331 MtrunA17_Chr1g0175601 76.667 180 41 1 1 179 1 180 7.04e-98 280
MsaG046331 MtrunA17_Chr1g0175611 78.107 169 37 0 1 169 1 169 3.14e-94 271
MsaG046331 MtrunA17_Chr8g0357771 58.989 178 73 0 1 178 1 178 3.99e-73 218
MsaG046331 MtrunA17_Chr8g0356071 57.738 168 65 2 1 168 1 162 6.39e-63 191
MsaG046331 MtrunA17_Chr4g0052061 41.212 165 83 5 1 164 1 152 1.08e-33 117
MsaG046331 MtrunA17_Chr3g0119901 40.588 170 82 4 1 157 8 171 3.94e-31 112
MsaG046331 MtrunA17_Chr3g0099411 41.304 138 78 2 2 136 9 146 1.02e-29 108
MsaG046331 MtrunA17_Chr4g0052081 42.657 143 77 3 1 140 1 141 1.52e-28 104
MsaG046331 MtrunA17_Chr3g0085241 41.176 153 79 4 1 148 40 186 2.26e-27 103
MsaG046331 MtrunA17_Chr1g0206991 46.535 101 52 1 2 100 9 109 5.45e-27 100
MsaG046331 MtrunA17_Chr1g0206721 47.525 101 51 1 2 100 9 109 2.10e-26 100
MsaG046331 MtrunA17_Chr5g0419601 35.329 167 90 4 1 152 8 171 5.71e-26 99.4
MsaG046331 MtrunA17_Chr3g0099421 47.525 101 51 1 2 100 34 134 1.26e-25 99.0
MsaG046331 MtrunA17_Chr1g0149391 40.650 123 70 2 2 122 9 130 3.65e-25 97.4
MsaG046331 MtrunA17_Chr1g0206701 46.535 101 52 1 2 100 9 109 4.24e-25 97.1
MsaG046331 MtrunA17_Chr8g0355091 47.525 101 51 1 2 100 9 109 1.56e-24 95.5
MsaG046331 MtrunA17_Chr1g0188671 45.794 107 56 2 2 108 47 151 2.08e-24 96.3
MsaG046331 MtrunA17_Chr2g0292791 35.714 154 87 2 2 143 9 162 3.56e-24 94.7
MsaG046331 MtrunA17_Chr2g0333981 41.964 112 63 1 1 112 11 120 4.81e-24 92.8
MsaG046331 MtrunA17_Chr1g0208581 44.554 101 54 1 2 100 9 109 8.01e-24 93.6
MsaG046331 MtrunA17_Chr1g0208561 45.545 101 53 1 2 100 9 109 8.18e-24 93.6
MsaG046331 MtrunA17_Chr3g0089141 45.545 101 53 1 2 100 9 109 1.17e-23 93.2
MsaG046331 MtrunA17_Chr2g0300421 45.545 101 53 1 2 100 9 109 1.62e-23 91.7
MsaG046331 MtrunA17_Chr1g0187361 46.226 106 55 2 2 107 9 112 2.70e-23 92.4
MsaG046331 MtrunA17_Chr2g0325971 44.144 111 59 2 2 110 9 118 7.46e-23 90.9
MsaG046331 MtrunA17_Chr5g0422421 53.521 71 33 0 2 72 9 79 2.20e-22 90.1
MsaG046331 MtrunA17_Chr4g0018951 37.121 132 71 2 14 139 24 149 2.57e-22 88.2
MsaG046331 MtrunA17_Chr5g0422941 50.649 77 38 0 2 78 9 85 5.01e-22 89.0
MsaG046331 MtrunA17_Chr3g0089151 47.436 78 41 0 2 79 9 86 5.57e-22 86.3
MsaG046331 MtrunA17_Chr1g0206691 37.681 138 74 2 18 143 8 145 1.02e-21 87.8
MsaG046331 MtrunA17_Chr2g0317451 50.000 78 39 0 2 79 9 86 1.19e-21 88.2
MsaG046331 MtrunA17_Chr2g0317481 50.000 78 39 0 2 79 9 86 1.20e-21 88.2
MsaG046331 MtrunA17_Chr8g0379021 42.342 111 57 3 2 110 12 117 4.75e-21 85.1
MsaG046331 MtrunA17_Chr2g0300441 43.564 101 55 1 2 100 9 109 9.91e-21 85.5
MsaG046331 MtrunA17_Chr4g0020221 50.725 69 34 0 1 69 1 69 1.52e-19 82.8
MsaG046331 MtrunA17_Chr2g0284911 41.346 104 58 1 1 104 16 116 1.92e-19 82.8
MsaG046331 MtrunA17_Chr5g0404951 50.000 64 32 0 1 64 1 64 5.20e-19 80.9
MsaG046331 MtrunA17_Chr1g0187351 60.000 55 22 0 18 72 8 62 8.40e-19 76.3
MsaG046331 MtrunA17_Chr1g0173161 46.154 78 39 1 1 78 1 75 2.08e-18 75.5
MsaG046331 MtrunA17_Chr8g0380021 39.423 104 60 1 1 104 17 117 2.89e-18 79.3
MsaG046331 MtrunA17_Chr7g0238991 48.571 70 36 0 10 79 29 98 3.17e-18 79.3
MsaG046331 MtrunA17_Chr3g0097101 50.725 69 34 0 1 69 16 84 9.70e-18 77.8
MsaG046331 MtrunA17_Chr5g0427401 47.222 72 38 0 1 72 1 72 1.01e-17 77.4
MsaG046331 MtrunA17_Chr2g0279821 48.000 75 39 0 1 75 1 75 1.14e-17 77.4
MsaG046331 MtrunA17_Chr3g0077501 50.725 69 34 0 1 69 1 69 1.28e-17 77.0
MsaG046331 MtrunA17_Chr4g0071601 48.235 85 44 0 1 85 11 95 1.65e-17 76.3
MsaG046331 MtrunA17_Chr8g0351041 43.182 88 45 1 1 83 1 88 1.97e-17 75.5
MsaG046331 MtrunA17_Chr8g0351051 47.826 69 36 0 1 69 1 69 6.21e-17 75.9
MsaG046331 MtrunA17_Chr5g0427921 51.667 60 29 0 1 60 1 60 1.60e-16 70.1
MsaG046331 MtrunA17_Chr8g0351031 43.678 87 44 1 1 82 1 87 2.01e-16 73.9
MsaG046331 MtrunA17_Chr4g0061671 34.351 131 71 3 1 116 1 131 2.32e-16 73.2
MsaG046331 MtrunA17_Chr4g0049541 46.377 69 37 0 1 69 1 69 2.65e-16 73.6
MsaG046331 MtrunA17_Chr3g0111931 41.772 79 44 1 18 94 6 84 4.71e-16 70.1
MsaG046331 MtrunA17_Chr4g0057151 46.377 69 37 0 1 69 1 69 5.00e-16 72.4
MsaG046331 MtrunA17_Chr1g0164791 47.887 71 35 1 1 69 1 71 6.21e-16 72.8
MsaG046331 MtrunA17_Chr4g0049901 49.231 65 33 0 1 65 27 91 9.17e-16 72.4
MsaG046331 MtrunA17_Chr7g0246431 44.928 69 38 0 1 69 1 69 9.97e-16 72.0
MsaG046331 MtrunA17_Chr4g0044071 56.897 58 25 0 1 58 1 58 9.99e-16 69.7
MsaG046331 MtrunA17_Chr3g0111841 56.250 48 21 0 18 65 12 59 1.15e-15 68.2
MsaG046331 MtrunA17_Chr6g0474371 33.333 138 84 4 1 134 1 134 1.31e-15 71.2
MsaG046331 MtrunA17_Chr1g0204111 45.070 71 39 0 1 71 17 87 1.57e-15 72.0
MsaG046331 MtrunA17_Chr5g0411691 46.377 69 37 0 1 69 1 69 1.70e-15 71.6
MsaG046331 MtrunA17_Chr5g0425191 56.897 58 25 0 1 58 1 58 2.14e-15 68.6
MsaG046331 MtrunA17_Chr7g0220121 34.783 92 54 2 1 86 1 92 2.99e-15 71.2
MsaG046331 MtrunA17_Chr5g0420091 50.877 57 28 0 1 57 1 57 7.95e-15 69.7
MsaG046331 MtrunA17_Chr7g0246381 47.059 68 31 1 1 63 1 68 8.89e-15 65.9
MsaG046331 MtrunA17_Chr2g0308251 40.845 71 41 1 1 70 1 71 1.03e-14 66.2
MsaG046331 MtrunA17_Chr7g0220111 50.877 57 28 0 1 57 1 57 1.08e-14 69.7
MsaG046331 MtrunA17_Chr8g0377561 50.877 57 28 0 1 57 1 57 1.36e-14 66.2
MsaG046331 MtrunA17_Chr1g0159661 32.432 111 64 3 1 105 1 106 1.48e-14 68.2
MsaG046331 MtrunA17_Chr3g0142191 47.541 61 32 0 1 61 1 61 1.65e-14 68.9
MsaG046331 MtrunA17_Chr3g0134451 45.070 71 38 1 1 70 1 71 1.92e-14 69.7
MsaG046331 MtrunA17_Chr5g0420081 47.368 57 30 0 1 57 1 57 2.00e-14 68.9
MsaG046331 MtrunA17_Chr4g0061691 40.000 70 41 1 1 69 1 70 2.33e-14 68.6
MsaG046331 MtrunA17_Chr4g0018421 45.833 72 38 1 1 71 1 72 2.58e-14 67.8
MsaG046331 MtrunA17_Chr3g0122251 52.632 57 27 0 1 57 1 57 2.79e-14 68.6
MsaG046331 MtrunA17_Chr5g0412271 33.929 112 66 2 1 106 1 110 3.58e-14 68.2
MsaG046331 MtrunA17_Chr5g0412461 49.123 57 29 0 1 57 1 57 3.91e-14 67.8
MsaG046331 MtrunA17_Chr1g0166611 65.909 44 15 0 15 58 19 62 5.00e-14 65.9
MsaG046331 MtrunA17_Chr6g0455511 50.877 57 28 0 1 57 1 57 5.11e-14 67.8
MsaG046331 MtrunA17_Chr3g0125241 34.000 100 60 3 1 100 26 119 5.79e-14 67.0
MsaG046331 MtrunA17_Chr8g0366231 46.552 58 31 0 1 58 1 58 7.86e-14 67.4
MsaG046331 MtrunA17_Chr5g0417661 50.000 54 27 0 1 54 56 109 2.88e-13 63.5
MsaG046331 MtrunA17_Chr8g0345001 38.824 85 44 1 3 87 19 95 2.59e-12 62.4
MsaG046331 MtrunA17_Chr3g0111831 48.077 52 27 0 18 69 20 71 2.77e-12 59.7
MsaG046331 MtrunA17_Chr4g0060841 38.961 77 45 1 1 75 1 77 9.18e-12 62.4
MsaG046331 MtrunA17_Chr3g0093131 49.057 53 26 1 19 70 36 88 4.30e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046331 AT2G34440.1 44.571 175 79 6 1 161 1 171 1.22e-40 135
MsaG046331 AT3G66656.1 42.373 177 87 4 1 162 1 177 6.63e-32 113
MsaG046331 AT2G24840.1 35.329 167 87 3 1 150 62 224 3.79e-29 108
MsaG046331 AT5G60440.1 39.490 157 76 3 2 154 7 148 1.17e-27 105
MsaG046331 AT1G01530.1 42.143 140 77 2 1 140 6 141 9.23e-25 97.1
MsaG046331 AT1G65360.1 37.168 113 71 0 1 113 6 118 1.44e-21 88.2
MsaG046331 AT1G47760.1 50.649 77 36 1 1 77 1 75 1.01e-20 84.7
MsaG046331 AT3G57230.2 40.000 110 65 1 1 110 1 109 3.75e-20 82.4
MsaG046331 AT5G13790.2 41.837 98 50 1 1 98 1 91 4.42e-20 85.1
MsaG046331 AT4G36590.1 38.686 137 54 3 2 120 7 131 5.00e-20 84.3
MsaG046331 AT1G72350.1 43.846 130 62 4 2 131 43 161 1.15e-19 82.8
MsaG046331 AT3G57230.1 40.000 110 65 1 1 110 1 109 1.66e-19 82.8
MsaG046331 AT3G57230.4 40.000 110 65 1 1 110 1 109 1.66e-19 82.8
MsaG046331 AT5G13790.1 50.725 69 34 0 1 69 1 69 2.33e-19 82.8
MsaG046331 AT3G04100.1 35.915 142 68 4 2 138 14 137 4.20e-19 81.3
MsaG046331 AT3G57390.3 50.725 69 34 0 1 69 1 69 9.45e-19 80.5
MsaG046331 AT3G61120.1 47.826 69 36 0 1 69 1 69 1.31e-18 80.5
MsaG046331 AT3G57390.1 50.725 69 34 0 1 69 1 69 1.79e-18 80.5
MsaG046331 AT4G22950.2 49.275 69 35 0 1 69 1 69 5.79e-18 77.4
MsaG046331 AT5G51860.2 44.578 83 46 0 1 83 1 83 7.62e-18 77.8
MsaG046331 AT5G51860.1 44.578 83 46 0 1 83 1 83 8.11e-18 77.8
MsaG046331 AT4G09960.6 43.820 89 47 1 1 89 2 87 8.40e-18 78.2
MsaG046331 AT4G09960.1 43.820 89 47 1 1 89 1 86 8.98e-18 78.2
MsaG046331 AT4G09960.2 34.862 109 71 0 1 109 1 109 9.65e-18 77.8
MsaG046331 AT2G42830.1 38.679 106 62 1 1 106 16 118 1.35e-17 77.8
MsaG046331 AT4G09960.5 43.820 89 47 1 1 89 11 96 1.37e-17 77.8
MsaG046331 AT2G42830.2 38.679 106 62 1 1 106 16 118 1.45e-17 77.8
MsaG046331 AT4G09960.4 43.820 89 47 1 1 89 96 181 1.59e-17 79.0
MsaG046331 AT2G45650.1 49.275 69 35 0 1 69 1 69 1.67e-17 77.8
MsaG046331 AT4G09960.3 43.820 89 47 1 1 89 27 112 1.85e-17 77.8
MsaG046331 AT3G58780.1 38.679 106 62 1 1 106 16 118 1.92e-17 77.4
MsaG046331 AT3G58780.5 38.679 106 62 1 1 106 22 124 2.12e-17 77.4
MsaG046331 AT4G37940.3 32.692 156 94 3 1 156 1 145 2.44e-17 75.9
MsaG046331 AT4G37940.1 49.275 69 35 0 1 69 1 69 2.64e-17 76.6
MsaG046331 AT5G51870.1 37.037 108 58 2 1 104 1 102 2.88e-17 76.3
MsaG046331 AT4G37940.4 49.275 69 35 0 1 69 1 69 3.51e-17 76.3
MsaG046331 AT5G51870.2 37.037 108 58 2 1 104 1 102 3.84e-17 75.1
MsaG046331 AT3G58780.4 38.679 106 62 1 1 106 16 118 3.92e-17 77.0
MsaG046331 AT1G29962.1 44.444 72 40 0 2 73 8 79 5.17e-17 75.1
MsaG046331 AT4G22950.3 49.275 69 35 0 1 69 1 69 5.51e-17 75.9
MsaG046331 AT4G22950.1 49.275 69 35 0 1 69 1 69 5.51e-17 75.9
MsaG046331 AT5G51870.4 37.037 108 58 2 1 104 1 102 5.86e-17 75.9
MsaG046331 AT5G20240.2 40.000 100 54 3 1 100 1 94 5.87e-17 73.9
MsaG046331 AT5G51870.5 37.037 108 58 2 1 104 24 125 6.09e-17 75.1
MsaG046331 AT5G65070.4 44.872 78 41 1 1 78 1 76 7.52e-17 73.6
MsaG046331 AT2G45660.2 35.354 99 57 1 1 92 1 99 8.78e-17 73.9
MsaG046331 AT5G51870.3 37.037 108 58 2 1 104 11 112 1.06e-16 75.1
MsaG046331 AT1G28460.1 44.928 69 38 0 2 70 8 76 1.31e-16 73.9
MsaG046331 AT2G22630.1 36.364 110 69 1 1 110 1 109 1.47e-16 74.7
MsaG046331 AT2G22630.2 36.364 110 69 1 1 110 1 109 1.47e-16 74.7
MsaG046331 AT5G20240.1 40.000 100 54 3 1 100 1 94 2.15e-16 73.9
MsaG046331 AT5G65070.1 51.724 58 28 0 1 58 1 58 2.27e-16 73.6
MsaG046331 AT5G62165.17 41.667 84 45 1 1 80 1 84 3.36e-16 72.4
MsaG046331 AT5G62165.12 41.667 84 45 1 1 80 1 84 3.36e-16 72.4
MsaG046331 AT5G62165.11 41.667 84 45 1 1 80 1 84 3.36e-16 72.4
MsaG046331 AT5G65070.3 50.769 65 30 1 1 63 1 65 3.49e-16 73.9
MsaG046331 AT5G10140.2 52.632 57 27 0 1 57 1 57 3.98e-16 72.4
MsaG046331 AT3G58780.2 43.023 86 36 1 1 73 16 101 4.11e-16 73.9
MsaG046331 AT1G17310.1 58.621 58 22 1 17 74 63 118 5.13e-16 73.2
MsaG046331 AT2G45660.1 34.259 108 68 1 1 108 1 105 5.14e-16 73.2
MsaG046331 AT5G62165.14 41.667 84 45 1 1 80 1 84 5.50e-16 70.5
MsaG046331 AT5G62165.6 41.667 84 45 1 1 80 1 84 5.61e-16 71.6
MsaG046331 AT5G62165.9 41.667 84 45 1 1 80 1 84 5.61e-16 71.6
MsaG046331 AT5G62165.7 41.667 84 45 1 1 80 1 84 5.61e-16 71.6
MsaG046331 AT5G62165.8 41.667 84 45 1 1 80 1 84 5.61e-16 71.6
MsaG046331 AT5G62165.13 41.667 84 45 1 1 80 1 84 5.61e-16 71.6
MsaG046331 AT1G17310.2 58.621 58 22 1 17 74 74 129 6.24e-16 73.2
MsaG046331 AT5G10140.3 51.724 58 28 0 1 58 1 58 6.54e-16 72.4
MsaG046331 AT5G10140.4 52.632 57 27 0 1 57 1 57 6.72e-16 72.0
MsaG046331 AT5G65070.2 51.724 58 28 0 1 58 1 58 7.31e-16 72.8
MsaG046331 AT5G10140.1 52.632 57 27 0 1 57 1 57 7.88e-16 72.4
MsaG046331 AT1G77950.3 37.209 172 87 10 1 155 1 168 8.15e-16 73.2
MsaG046331 AT1G77950.2 37.209 172 87 10 1 155 1 168 8.15e-16 73.2
MsaG046331 AT1G77950.1 37.209 172 87 10 1 155 1 168 8.15e-16 73.2
MsaG046331 AT1G77950.4 37.209 172 87 10 1 155 1 168 8.15e-16 73.2
MsaG046331 AT4G24540.1 34.211 114 61 2 1 105 1 109 1.08e-15 72.4
MsaG046331 AT1G77980.1 52.113 71 33 1 1 70 1 71 1.11e-15 73.6
MsaG046331 AT5G65070.5 51.724 58 28 0 1 58 1 58 1.20e-15 72.0
MsaG046331 AT4G18960.1 34.862 109 71 0 2 110 18 126 1.20e-15 72.8
MsaG046331 AT5G62165.3 44.928 69 38 0 1 69 1 69 1.42e-15 71.6
MsaG046331 AT5G62165.1 44.928 69 38 0 1 69 1 69 1.42e-15 71.6
MsaG046331 AT5G62165.2 44.928 69 38 0 1 69 1 69 1.42e-15 71.6
MsaG046331 AT5G62165.10 41.667 84 45 1 1 80 1 84 1.54e-15 71.6
MsaG046331 AT5G62165.4 41.667 84 45 1 1 80 1 84 1.54e-15 71.6
MsaG046331 AT1G46408.1 38.931 131 66 6 1 118 1 130 1.56e-15 72.8
MsaG046331 AT4G11880.2 53.448 58 27 0 1 58 1 58 1.63e-15 70.9
MsaG046331 AT4G11880.3 53.448 58 27 0 1 58 1 58 1.63e-15 70.9
MsaG046331 AT2G22540.3 44.928 69 38 0 1 69 1 69 1.98e-15 72.0
MsaG046331 AT2G22540.1 44.928 69 38 0 1 69 1 69 1.98e-15 72.0
MsaG046331 AT1G71692.1 47.222 72 37 1 1 71 1 72 2.35e-15 71.2
MsaG046331 AT2G14210.1 53.448 58 27 0 1 58 1 58 2.85e-15 71.2
MsaG046331 AT3G58780.3 54.237 59 27 0 1 59 16 74 3.21e-15 72.0
MsaG046331 AT2G14210.2 53.448 58 27 0 1 58 1 58 3.38e-15 71.2
MsaG046331 AT3G54340.1 28.649 185 108 5 1 167 1 179 3.44e-15 71.2
MsaG046331 AT1G22130.1 50.704 71 34 1 1 70 1 71 3.72e-15 72.4
MsaG046331 AT5G65080.3 41.026 78 44 1 1 76 8 85 4.28e-15 70.1
MsaG046331 AT4G11880.4 53.448 58 27 0 1 58 1 58 4.42e-15 70.9
MsaG046331 AT4G11880.1 53.448 58 27 0 1 58 1 58 4.42e-15 70.9
MsaG046331 AT2G03710.3 54.386 57 26 0 1 57 1 57 4.96e-15 70.1
MsaG046331 AT3G30260.1 38.053 113 62 3 1 105 1 113 9.89e-15 70.1
MsaG046331 AT5G65060.3 54.545 55 25 0 1 55 1 55 1.62e-14 68.6
MsaG046331 AT2G22540.2 50.877 57 28 0 1 57 1 57 1.80e-14 69.3
MsaG046331 AT5G65050.2 52.727 55 26 0 1 55 1 55 1.88e-14 68.2
MsaG046331 AT5G23260.4 57.895 57 24 0 1 57 17 73 2.08e-14 69.7
MsaG046331 AT5G23260.2 57.895 57 24 0 1 57 1 57 2.11e-14 69.3
MsaG046331 AT5G23260.1 57.895 57 24 0 1 57 17 73 2.34e-14 69.3
MsaG046331 AT2G03710.1 54.386 57 26 0 1 57 1 57 2.38e-14 69.3
MsaG046331 AT5G23260.3 57.895 57 24 0 1 57 1 57 2.39e-14 68.9
MsaG046331 AT2G03710.2 54.386 57 26 0 1 57 1 57 2.40e-14 69.3
MsaG046331 AT5G65060.2 54.545 55 25 0 1 55 1 55 2.43e-14 68.2
MsaG046331 AT5G65060.1 54.545 55 25 0 1 55 1 55 2.68e-14 68.2
MsaG046331 AT1G26310.1 48.276 58 30 0 1 58 1 58 3.94e-14 68.6
MsaG046331 AT5G15800.1 50.877 57 28 0 1 57 1 57 4.00e-14 68.6
MsaG046331 AT3G02310.2 50.877 57 28 0 1 57 1 57 4.11e-14 67.8
MsaG046331 AT1G69120.2 48.276 58 30 0 1 58 1 58 5.40e-14 68.2
MsaG046331 AT5G65050.5 52.727 55 26 0 1 55 1 55 5.52e-14 67.0
MsaG046331 AT5G65050.3 52.727 55 26 0 1 55 1 55 5.83e-14 67.4
MsaG046331 AT5G65050.1 52.727 55 26 0 1 55 1 55 5.87e-14 67.0
MsaG046331 AT5G15800.2 50.877 57 28 0 1 57 1 57 6.12e-14 68.2
MsaG046331 AT5G60910.1 47.368 57 30 0 1 57 1 57 6.48e-14 67.8
MsaG046331 AT1G24260.2 38.144 97 55 1 1 97 1 92 7.50e-14 67.8
MsaG046331 AT5G65080.2 43.478 69 38 1 1 69 8 75 8.07e-14 67.0
MsaG046331 AT1G24260.3 50.877 57 28 0 1 57 1 57 8.19e-14 67.4
MsaG046331 AT3G02310.1 50.877 57 28 0 1 57 1 57 8.73e-14 67.8
MsaG046331 AT1G24260.1 50.877 57 28 0 1 57 1 57 8.90e-14 67.8
MsaG046331 AT1G69120.1 48.276 58 30 0 1 58 1 58 1.09e-13 67.4
MsaG046331 AT1G18750.4 42.857 77 42 1 1 75 1 77 1.18e-13 68.2
MsaG046331 AT1G18750.3 42.857 77 42 1 1 75 1 77 1.18e-13 68.6
MsaG046331 AT1G18750.1 42.857 77 42 1 1 75 1 77 1.30e-13 68.2
MsaG046331 AT1G69540.1 43.421 76 42 1 1 75 1 76 2.91e-13 67.0
MsaG046331 AT4G37435.1 28.492 179 91 4 1 150 1 171 3.01e-13 65.1
MsaG046331 AT1G69540.2 43.421 76 42 1 1 75 1 76 3.41e-13 67.0
MsaG046331 AT1G28450.1 38.356 73 45 0 2 74 8 80 5.75e-13 64.3
MsaG046331 AT5G49420.1 39.759 83 45 2 3 80 8 90 1.68e-12 64.7
MsaG046331 AT1G60920.1 36.522 115 56 5 3 100 5 119 1.83e-12 63.2
MsaG046331 AT5G04640.1 42.667 75 39 2 3 73 5 79 2.32e-12 64.3
MsaG046331 AT2G03060.3 44.156 77 41 2 1 75 1 77 4.33e-12 63.9
MsaG046331 AT2G03060.7 44.156 77 41 2 1 75 1 77 4.33e-12 63.9
MsaG046331 AT2G03060.1 44.156 77 41 2 1 75 1 77 4.33e-12 63.9
MsaG046331 AT2G03060.2 44.156 77 41 2 1 75 1 77 4.59e-12 63.5
MsaG046331 AT5G49490.1 41.667 72 38 1 3 70 46 117 1.54e-11 61.6
MsaG046331 AT5G38620.1 40.278 72 39 1 3 70 6 77 2.88e-11 61.2
MsaG046331 AT2G26320.1 34.524 84 49 1 1 78 17 100 2.95e-11 58.2
MsaG046331 AT1G77080.5 66.667 39 13 0 1 39 1 39 5.86e-11 58.5
MsaG046331 AT1G77080.11 66.667 39 13 0 1 39 1 39 6.15e-11 58.5

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATCGACCTTACTCTTT+TGG 0.284342 8:+83449014 MsaT046331.1:CDS
CCTTGGGAATCACTTGGTTC+AGG 0.292476 8:-83449083 None:intergenic
TGAAGTGTTGGCACAAATTC+GGG 0.328856 8:+83449157 MsaT046331.1:CDS
ATATAAAGAGCTTCACGATT+TGG 0.333750 8:+83449268 MsaT046331.1:CDS
ATGAAGTGTTGGCACAAATT+CGG 0.337355 8:+83449156 MsaT046331.1:CDS
CACTTGGTTCAGGCTCTTGT+TGG 0.351803 8:-83449073 None:intergenic
CATCAAAGGCGGGGTTCCCT+TGG 0.370075 8:-83449100 None:intergenic
GAAATTACGTCTTAGTGATA+TGG 0.374504 8:+83449292 MsaT046331.1:CDS
GATCTCTGCTCCGCACAAAA+TGG 0.391172 8:-83448970 None:intergenic
GCAGCAACAACATCAATTCC+TGG 0.405755 8:-83449041 None:intergenic
AGGCTCTTGTTGGAGATACT+TGG 0.417524 8:-83449063 None:intergenic
CTTTCTTGAATAAACCTGTT+CGG 0.422634 8:-83448935 None:intergenic
ACATTCTCAAAACGCCGAAC+AGG 0.455680 8:+83448921 MsaT046331.1:CDS
CTTGCTTCAGAATCTCATCA+TGG 0.463297 8:-83449202 None:intergenic
TTCTATATTGGGTGCATCAA+AGG 0.465966 8:-83449114 None:intergenic
CAGAATCTCATCATGGGTCT+CGG 0.474100 8:-83449195 None:intergenic
ATCAAAGGCGGGGTTCCCTT+GGG 0.479846 8:-83449099 None:intergenic
AATGTGACCTGCCTCGTGTT+GGG 0.485158 8:-83448903 None:intergenic
ATCTCTCAATTCTTTAAGCT+CGG 0.500207 8:-83449243 None:intergenic
ATATTGGGTGCATCAAAGGC+GGG 0.517080 8:-83449110 None:intergenic
AAAGAGTAAGGTCGATTCCC+AGG 0.524951 8:-83449011 None:intergenic
TTGCTTCAGAATCTCATCAT+GGG 0.526253 8:-83449201 None:intergenic
GAAAGATCCCAACACGAGGC+AGG 0.532566 8:+83448896 MsaT046331.1:CDS
CCTGGGTGACCAAAAGAGTA+AGG 0.535714 8:-83449023 None:intergenic
GGGTTCCCTTGGGAATCACT+TGG 0.548832 8:-83449089 None:intergenic
GAATGTGACCTGCCTCGTGT+TGG 0.574867 8:-83448904 None:intergenic
CAGCAACAACATCAATTCCT+GGG 0.584319 8:-83449040 None:intergenic
TATATTGGGTGCATCAAAGG+CGG 0.587144 8:-83449111 None:intergenic
TTTAGCTCAGGATCCAGTGG+TGG 0.589768 8:+83449337 MsaT046331.1:CDS
TTAGCTCAGGATCCAGTGGT+GGG 0.603917 8:+83449338 MsaT046331.1:CDS
TCTAGAACTTGATGAAGTGT+TGG 0.605039 8:+83449145 MsaT046331.1:CDS
TATTGGGTGCATCAAAGGCG+GGG 0.638588 8:-83449109 None:intergenic
CCTGAACCAAGTGATTCCCA+AGG 0.649130 8:+83449083 MsaT046331.1:CDS
GTGTTGGCACAAATTCGGGA+AGG 0.674614 8:+83449161 MsaT046331.1:CDS
CTGAACCAAGTGATTCCCAA+GGG 0.694896 8:+83449084 MsaT046331.1:CDS
TCGTGAAAGATCCCAACACG+AGG 0.703551 8:+83448892 MsaT046331.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 83448864 83449403 83448864 ID=MsaG046331
Chr8 mRNA 83448864 83449403 83448864 ID=MsaT046331.1;Parent=MsaG046331
Chr8 exon 83448864 83449403 83448864 ID=MsaT046331.1.exon1;Parent=MsaT046331.1
Chr8 CDS 83448864 83449403 83448864 ID=cds.MsaT046331.1;Parent=MsaT046331.1
Gene Sequence

>MsaT046331.1

ATGGGTCGTCGCAAAATTGAGATTGAGATCGTGAAAGATCCCAACACGAGGCAGGTCACATTCTCAAAACGCCGAACAGGTTTATTCAAGAAAGCAAATGAGTTGTCCATTTTGTGCGGAGCAGAGATCGCTATTGTTGTGTTTTCTCCTGGGAATCGACCTTACTCTTTTGGTCACCCAGGAATTGATGTTGTTGCTGCCAAGTATCTCCAACAAGAGCCTGAACCAAGTGATTCCCAAGGGAACCCCGCCTTTGATGCACCCAATATAGAAAAATTGAATCTAGAACTTGATGAAGTGTTGGCACAAATTCGGGAAGGTGAAAAGCAGACCGAGACCCATGATGAGATTCTGAAGCAAGACAATGTGATGAAACTCTCCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCACGATTTGGTGAAATTACGTCTTAGTGATATGGAGATATCAGAATGCATGATGCTTTTAGCTCAGGATCCAGTGGTGGGAATAAAAGAAAAATCTGCAAGAAAGAAAAGAAGAAAAAATTAA
Protein sequence

>MsaT046331.1

MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSPGNRPYSFGHPGIDVVAAKYLQQEPEPSDSQGNPAFDAPNIEKLNLELDEVLAQIREGEKQTETHDEILKQDNVMKLSELKELRDSYKELHDLVKLRLSDMEISECMMLLAQDPVVGIKEKSARKKRRKN*