AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046352


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046352 MtrunA17_Chr4g0074401 92.384 604 38 3 1 604 1 596 0.0 1110
MsaG046352 MtrunA17_Chr4g0074411 78.000 600 121 4 1 599 2 591 0.0 909
MsaG046352 MtrunA17_Chr2g0304841 43.353 662 291 18 3 595 4 650 5.95e-139 420
MsaG046352 MtrunA17_Chr3g0137101 49.850 333 153 4 14 341 5 328 7.53e-92 296
MsaG046352 MtrunA17_Chr4g0074421 73.822 191 41 1 66 256 1 182 2.73e-88 272
MsaG046352 MtrunA17_Chr1g0149841 47.788 339 158 6 15 341 3 334 1.24e-87 281
MsaG046352 MtrunA17_Chr4g0067981 42.040 402 170 11 15 382 29 401 1.88e-80 267
MsaG046352 MtrunA17_Chr2g0294911 42.424 363 187 6 6 357 18 369 4.95e-80 264
MsaG046352 MtrunA17_Chr1g0161431 47.855 303 134 5 16 304 10 302 9.04e-80 264
MsaG046352 MtrunA17_Chr1g0149851 43.363 339 167 7 15 332 3 337 1.30e-74 248
MsaG046352 MtrunA17_Chr7g0275401 49.805 257 120 3 13 266 1 251 2.64e-74 239
MsaG046352 MtrunA17_Chr3g0123131 51.154 260 107 4 16 267 12 259 3.50e-74 248
MsaG046352 MtrunA17_Chr8g0376881 50.980 255 113 3 17 268 25 270 3.80e-74 246
MsaG046352 MtrunA17_Chr7g0275891 47.925 265 115 4 15 263 3 260 1.02e-72 237
MsaG046352 MtrunA17_Chr3g0134461 46.888 241 71 4 17 256 8 192 1.43e-52 178
MsaG046352 MtrunA17_Chr1g0149831 49.746 197 80 4 76 266 1 184 1.19e-49 172
MsaG046352 MtrunA17_Chr3g0134481 60.769 130 51 0 11 140 2 131 7.10e-45 157
MsaG046352 MtrunA17_Chr3g0134481 62.264 53 20 0 206 258 131 183 2.92e-15 74.7
MsaG046352 MtrunA17_Chr4g0009901 35.433 254 132 5 17 270 10 231 6.10e-43 155
MsaG046352 MtrunA17_Chr4g0009851 33.858 254 136 5 17 270 11 232 2.46e-42 154
MsaG046352 MtrunA17_Chr6g0471041 31.439 264 144 4 1 263 1 228 2.10e-36 140
MsaG046352 MtrunA17_Chr4g0009981 33.014 209 109 3 62 270 2 179 5.57e-32 124
MsaG046352 MtrunA17_Chr8g0391911 32.331 266 130 6 13 256 5 242 7.14e-28 112
MsaG046352 MtrunA17_Chr8g0350761 27.799 259 167 6 20 262 20 274 7.08e-26 111
MsaG046352 MtrunA17_Chr4g0031961 56.818 88 35 1 177 264 104 188 1.74e-22 98.6
MsaG046352 MtrunA17_Chr3g0127941 29.911 224 138 7 21 237 56 267 7.70e-22 100
MsaG046352 MtrunA17_Chr6g0473731 34.503 171 82 4 96 263 8 151 1.01e-21 98.6
MsaG046352 MtrunA17_Chr8g0383961 33.113 151 98 1 1 151 1 148 1.74e-21 94.7
MsaG046352 MtrunA17_Chr7g0276361 30.256 195 114 3 18 206 11 189 1.78e-21 98.6
MsaG046352 MtrunA17_Chr8g0345901 37.600 125 75 2 23 144 38 162 2.78e-21 98.2
MsaG046352 MtrunA17_Chr7g0255711 55.000 80 36 0 185 264 69 148 3.35e-21 94.4
MsaG046352 MtrunA17_Chr6g0456631 34.058 138 88 2 13 148 5 141 1.67e-20 89.0
MsaG046352 MtrunA17_Chr4g0009991 36.486 148 62 3 109 256 1 116 1.04e-19 85.5
MsaG046352 MtrunA17_Chr4g0030271 36.691 139 81 4 5 139 75 210 1.19e-19 93.6
MsaG046352 MtrunA17_Chr1g0181811 36.885 122 74 2 21 139 85 206 3.40e-19 92.0
MsaG046352 MtrunA17_Chr4g0011071 29.167 168 88 4 63 230 35 171 1.58e-18 83.6
MsaG046352 MtrunA17_Chr4g0061021 30.986 142 90 2 21 159 33 169 3.97e-17 85.1
MsaG046352 MtrunA17_Chr3g0091641 30.894 123 82 1 21 140 24 146 5.60e-17 84.3
MsaG046352 MtrunA17_Chr4g0054981 60.656 61 24 0 200 260 303 363 4.05e-16 81.6
MsaG046352 MtrunA17_Chr4g0054981 36.508 126 76 2 15 139 12 134 9.61e-15 77.4
MsaG046352 MtrunA17_Chr5g0400241 59.016 61 25 0 200 260 304 364 5.74e-16 81.3
MsaG046352 MtrunA17_Chr5g0400241 37.302 126 75 2 15 139 12 134 1.27e-14 77.0
MsaG046352 MtrunA17_Chr1g0198601 51.389 72 33 2 196 266 201 271 3.59e-14 74.7
MsaG046352 MtrunA17_Chr4g0040481 50.909 55 27 0 205 259 156 210 5.00e-13 71.2
MsaG046352 MtrunA17_Chr2g0324891 50.909 55 27 0 205 259 159 213 1.21e-12 70.1
MsaG046352 MtrunA17_Chr7g0274471 55.000 60 26 1 207 265 218 277 3.52e-12 68.9
MsaG046352 MtrunA17_Chr1g0190301 50.000 64 31 1 203 265 171 234 3.53e-12 68.6
MsaG046352 MtrunA17_Chr4g0062921 47.059 68 35 1 204 270 232 299 5.99e-12 68.2
MsaG046352 MtrunA17_Chr7g0261911 51.562 64 30 1 203 265 258 321 7.18e-12 68.2
MsaG046352 MtrunA17_Chr5g0423031 37.037 81 50 1 17 97 10 89 7.85e-12 64.3
MsaG046352 MtrunA17_Chr1g0170741 27.941 136 83 3 21 141 8 143 1.19e-11 64.3
MsaG046352 MtrunA17_Chr2g0321461 53.333 60 27 1 203 261 41 100 1.70e-11 66.2
MsaG046352 MtrunA17_Chr5g0414931 29.444 180 104 8 21 181 16 191 3.20e-11 63.9
MsaG046352 MtrunA17_Chr6g0461641 51.667 60 28 1 203 261 38 97 3.27e-11 65.5
MsaG046352 MtrunA17_Chr5g0417521 52.542 59 27 1 203 260 11 69 3.96e-11 65.1
MsaG046352 MtrunA17_Chr4g0059571 27.972 143 88 5 15 142 17 159 5.32e-11 62.8
MsaG046352 MtrunA17_Chr8g0352871 26.241 141 84 3 22 142 10 150 8.36e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046352 AT2G25180.1 45.918 392 188 8 1 381 1 379 7.89e-92 295
MsaG046352 AT4G31920.1 49.560 341 137 10 1 330 1 317 2.89e-83 271
MsaG046352 AT5G58080.1 44.652 374 183 7 9 376 6 361 8.11e-83 272
MsaG046352 AT3G16857.1 43.567 342 165 6 15 333 31 367 4.62e-78 261
MsaG046352 AT3G16857.2 43.567 342 165 6 15 333 31 367 8.92e-78 260
MsaG046352 AT1G67710.1 54.510 255 103 4 18 267 8 254 1.87e-72 242
MsaG046352 AT2G01760.1 45.055 273 121 3 13 269 3 262 5.81e-67 223
MsaG046352 AT3G16857.3 42.857 301 144 6 56 333 2 297 1.37e-63 221
MsaG046352 AT2G01760.2 41.137 299 119 4 15 269 5 290 4.27e-61 208
MsaG046352 AT5G49240.1 39.357 249 140 3 11 256 32 272 3.80e-49 173
MsaG046352 AT1G67710.2 51.777 197 82 4 76 267 1 189 1.31e-46 171
MsaG046352 AT2G01760.3 44.762 210 87 4 76 269 1 197 1.10e-43 159
MsaG046352 AT1G49190.1 32.492 317 177 10 17 322 30 320 2.06e-41 155
MsaG046352 AT3G62670.1 34.948 289 147 9 36 311 54 314 2.86e-38 147
MsaG046352 AT1G67710.3 47.727 176 79 4 97 267 13 180 9.12e-34 134
MsaG046352 AT5G07210.2 30.996 271 163 5 21 269 16 284 2.36e-31 129
MsaG046352 AT5G07210.1 30.466 279 162 6 21 269 16 292 7.32e-29 122
MsaG046352 AT2G27070.1 28.328 293 183 7 9 276 4 294 1.87e-27 117
MsaG046352 AT4G18020.8 30.678 339 139 9 15 259 12 348 3.71e-27 115
MsaG046352 AT4G18020.11 30.678 339 139 9 15 259 12 348 3.71e-27 115
MsaG046352 AT4G18020.4 30.678 339 139 9 15 259 12 348 3.71e-27 115
MsaG046352 AT4G18020.5 30.678 339 139 9 15 259 12 348 3.71e-27 115
MsaG046352 AT4G18020.10 30.678 339 139 9 15 259 12 348 3.71e-27 115
MsaG046352 AT4G18020.7 30.678 339 139 9 15 259 12 348 3.71e-27 115
MsaG046352 AT4G18020.3 30.678 339 139 9 15 259 12 348 6.33e-27 115
MsaG046352 AT4G18020.2 30.678 339 139 9 15 259 12 348 6.33e-27 115
MsaG046352 AT4G18020.1 30.678 339 139 9 15 259 12 348 6.33e-27 115
MsaG046352 AT4G18020.6 30.678 339 139 9 15 259 12 348 6.33e-27 115
MsaG046352 AT4G18020.9 30.678 339 139 9 15 259 12 348 6.33e-27 115
MsaG046352 AT5G59570.2 54.945 91 41 0 174 264 108 198 4.53e-24 103
MsaG046352 AT5G59570.1 54.945 91 41 0 174 264 108 198 4.53e-24 103
MsaG046352 AT1G49190.2 38.400 125 77 0 17 141 30 154 9.16e-24 106
MsaG046352 AT1G49190.2 34.722 144 66 10 194 322 405 535 7.89e-11 65.5
MsaG046352 AT3G46640.2 61.333 75 29 0 190 264 127 201 1.78e-22 99.4
MsaG046352 AT3G46640.1 61.333 75 29 0 190 264 127 201 1.78e-22 99.4
MsaG046352 AT2G46790.3 37.209 129 78 2 21 146 37 165 2.18e-22 100
MsaG046352 AT3G46640.3 61.333 75 29 0 190 264 127 201 2.55e-22 98.6
MsaG046352 AT2G46790.1 37.209 129 78 2 21 146 37 165 2.85e-22 100
MsaG046352 AT5G24470.1 31.847 157 103 3 19 172 48 203 8.53e-22 100
MsaG046352 AT3G10760.1 61.429 70 27 0 195 264 93 162 2.53e-21 95.9
MsaG046352 AT5G05090.1 57.895 76 32 0 189 264 63 138 4.30e-21 94.0
MsaG046352 AT2G40970.1 59.155 71 29 0 194 264 92 162 3.08e-20 90.9
MsaG046352 AT5G60100.7 37.795 127 75 3 17 139 59 185 9.83e-20 92.4
MsaG046352 AT5G60100.6 37.795 127 75 3 17 139 59 185 9.83e-20 92.4
MsaG046352 AT5G60100.4 37.795 127 75 3 17 139 59 185 9.83e-20 92.4
MsaG046352 AT5G60100.5 37.795 127 75 3 17 139 59 185 1.83e-19 92.4
MsaG046352 AT5G60100.3 37.795 127 75 3 17 139 59 185 1.83e-19 92.4
MsaG046352 AT5G60100.1 37.795 127 75 3 17 139 59 185 1.83e-19 92.4
MsaG046352 AT5G60100.2 37.795 127 75 3 17 139 59 185 2.79e-19 92.0
MsaG046352 AT5G02810.1 36.885 122 74 2 21 139 78 199 1.02e-17 87.8
MsaG046352 AT1G68210.1 26.241 282 168 7 23 270 15 290 2.42e-17 86.7
MsaG046352 AT5G61380.1 33.333 123 79 1 21 140 19 141 1.12e-16 84.0
MsaG046352 AT5G44190.2 58.333 60 25 0 200 259 140 199 3.30e-16 80.9
MsaG046352 AT5G44190.1 58.333 60 25 0 200 259 140 199 3.55e-16 81.3
MsaG046352 AT2G20570.1 45.000 80 42 1 180 259 128 205 3.45e-13 72.4
MsaG046352 AT2G03500.1 44.000 75 41 1 206 279 232 306 1.70e-12 70.1
MsaG046352 AT2G20570.2 62.500 48 18 0 212 259 174 221 2.10e-12 70.1
MsaG046352 AT1G79430.2 43.750 96 34 3 203 297 30 106 2.63e-12 68.9
MsaG046352 AT1G25550.1 45.333 75 38 2 195 266 195 269 4.10e-12 68.6
MsaG046352 AT5G45580.1 47.761 67 34 1 207 272 7 73 4.88e-12 67.0
MsaG046352 AT5G45580.2 47.761 67 34 1 207 272 23 89 5.10e-12 67.4
MsaG046352 AT2G01060.1 50.000 72 32 2 191 261 2 70 1.11e-11 66.2
MsaG046352 AT1G19050.1 27.389 157 99 4 1 142 1 157 1.24e-11 64.7
MsaG046352 AT1G68670.1 42.169 83 42 2 185 266 198 275 1.52e-11 66.6
MsaG046352 AT5G18240.2 55.000 60 26 1 203 261 41 100 1.88e-11 66.6
MsaG046352 AT5G18240.3 55.000 60 26 1 203 261 41 100 1.88e-11 66.6
MsaG046352 AT3G04030.1 53.333 60 27 1 203 261 41 100 1.89e-11 66.6
MsaG046352 AT3G04030.3 53.333 60 27 1 203 261 41 100 2.02e-11 66.6
MsaG046352 AT5G18240.5 55.000 60 26 1 203 261 41 100 2.07e-11 66.6
MsaG046352 AT5G18240.1 55.000 60 26 1 203 261 41 100 2.11e-11 66.6
MsaG046352 AT5G18240.4 55.000 60 26 1 203 261 41 100 2.11e-11 66.6
MsaG046352 AT1G10470.3 30.000 130 79 3 21 138 20 149 5.61e-11 63.5
MsaG046352 AT1G74890.1 26.154 130 84 2 21 138 18 147 6.96e-11 62.8

Find 116 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCGCTCAGTTCTCAATTT+AGG 0.173828 8:-83685270 MsaT046352.1:CDS
AGCTTGAATCCATCCATTTC+TGG 0.203555 8:+83686979 None:intergenic
TTATAGTTTGTACCTGTAAA+TGG 0.224166 8:+83686187 None:intergenic
TGAAAACTCGAGTGCTTTAA+AGG 0.227005 8:-83685644 MsaT046352.1:CDS
AAACAATGGCTGCTTGTAAC+TGG 0.250042 8:+83685675 None:intergenic
CGTCATTGATGTTCCTTTAG+AGG 0.255703 8:-83685218 MsaT046352.1:CDS
TATTAGCTTGGGGTACATTA+TGG 0.266193 8:+83685056 None:intergenic
GGAAGAAGCCTCGTTTAGTT+TGG 0.283283 8:-83686482 MsaT046352.1:CDS
TCCTGTGGGAATGCATGTTC+TGG 0.298859 8:-83688143 MsaT046352.1:CDS
CTTCTCATGTGCAAGTATAA+TGG 0.318350 8:-83688076 MsaT046352.1:intron
GAGAAAGAAGATTGAAAGTA+AGG 0.340472 8:-83686685 MsaT046352.1:CDS
TGAGGCATCTGAGTGATTAA+TGG 0.341513 8:+83685031 None:intergenic
CAATGTCAAGATGGATTACT+TGG 0.343348 8:-83685187 MsaT046352.1:CDS
AAGAATTCAGTAGCTGGATA+TGG 0.366836 8:-83685859 MsaT046352.1:CDS
AGTGCATTTACAGATTCTTC+TGG 0.369412 8:-83685535 MsaT046352.1:CDS
GAAGAAGCCTCGTTTAGTTT+GGG 0.371171 8:-83686481 MsaT046352.1:CDS
TTATTCAGATGAAAGAACTA+TGG 0.373116 8:-83684996 MsaT046352.1:CDS
CATTGCATCGTTTCCTCTAA+AGG 0.374710 8:+83685205 None:intergenic
AGGACTGGAAGCAAAGTTAT+AGG 0.378746 8:+83685351 None:intergenic
GATGGCTTTGGAGAATCCTT+TGG 0.383986 8:-83688194 MsaT046352.1:CDS
TCTCAAAAGGCCATCTAAAC+AGG 0.387755 8:-83685917 MsaT046352.1:CDS
GATAAATGTTCCGGTGAAAC+TGG 0.391840 8:+83685596 None:intergenic
TCAGTAATGATACCTTTATT+CGG 0.392934 8:+83686660 None:intergenic
AAATGTGGCTAGCCATTTAC+AGG 0.398143 8:-83686199 MsaT046352.1:intron
CTCTTGAATTATGTGTTTGT+AGG 0.401274 8:+83685446 None:intergenic
ATTCTGGTTCATGATGGCTT+TGG 0.405441 8:-83688206 None:intergenic
TCTACTCTAGCCTGTTTAGA+TGG 0.413458 8:+83685907 None:intergenic
GAAAGTAAGGATCCGAATAA+AGG 0.416092 8:-83686672 MsaT046352.1:CDS
CTTAAGATTCTTCTTGATCC+AGG 0.420041 8:+83685820 None:intergenic
TGTCGGCTGAACGCACCATC+TGG 0.422911 8:-83685760 MsaT046352.1:CDS
TGAGCAAGTTGGACATGAAA+TGG 0.425491 8:-83686953 MsaT046352.1:CDS
TTCAGAATAGTTGTTTGCCT+TGG 0.425668 8:-83684919 MsaT046352.1:CDS
GAGCAATTGCTTGATGTAGA+TGG 0.426617 8:-83684947 MsaT046352.1:CDS
TTTATAAATCACCCATCTGT+TGG 0.434200 8:-83685421 MsaT046352.1:CDS
AATGCACTTGAATCATCAAT+TGG 0.435178 8:+83685550 None:intergenic
GATTAATGGACTATTAGCTT+GGG 0.435758 8:+83685045 None:intergenic
GAAAACGCAGAAGAAGATAA+TGG 0.437835 8:-83686534 MsaT046352.1:CDS
TACCAGGTGGATAAATGTTC+CGG 0.439267 8:+83685587 None:intergenic
CATCTAGTAACATGTATTGT+CGG 0.449068 8:-83685777 MsaT046352.1:CDS
TCTCTTGCTTCTTCTAATGC+AGG 0.449172 8:-83685094 MsaT046352.1:CDS
TAACATTAGCTCTGATGTCT+TGG 0.449900 8:+83685509 None:intergenic
CACCGGAACATTTATCCACC+TGG 0.455890 8:-83685589 MsaT046352.1:CDS
TTGGAGGTTGAAGATGTCTT+CGG 0.457510 8:-83688175 MsaT046352.1:CDS
TTATAGGAACCACTTGTAGC+AGG 0.464041 8:+83685367 None:intergenic
AATACAAACTTAGTCTCAAA+AGG 0.473606 8:-83685930 MsaT046352.1:CDS
TGGAAGAGCTTAAGAACATA+TGG 0.475204 8:-83686719 MsaT046352.1:CDS
GGAGATTTGTGTACCTTACC+TGG 0.477382 8:-83685838 MsaT046352.1:CDS
TGATTAATGGACTATTAGCT+TGG 0.477988 8:+83685044 None:intergenic
TGATGTAAACATGCCAGAAA+TGG 0.478571 8:-83686992 MsaT046352.1:CDS
TTCTTCCTTCAACAATACCT+TGG 0.480791 8:-83685119 MsaT046352.1:CDS
TTAAGCTCTTCCAATCGGAT+TGG 0.487989 8:+83686729 None:intergenic
TCAAACTTGTCTCAAACTGT+TGG 0.489304 8:-83688107 MsaT046352.1:CDS
TGTTCTTAAGCTCTTCCAAT+CGG 0.493421 8:+83686724 None:intergenic
GGCTTTGGAGAATCCTTTGG+AGG 0.494937 8:-83688191 MsaT046352.1:CDS
CTCACTCAATGGAGAAGGAC+TGG 0.495705 8:+83685336 None:intergenic
TGAATGTTGAAGGGCTTACA+AGG 0.497287 8:-83686224 MsaT046352.1:CDS
GAAAGAACTATGGAATCAAA+TGG 0.497837 8:-83684986 MsaT046352.1:CDS
CAGTCCTTCTCCATTGAGTG+AGG 0.499289 8:-83685335 MsaT046352.1:CDS
CTACAAAAGAATTCAGTAGC+TGG 0.500934 8:-83685865 MsaT046352.1:CDS
ATCTGTTGGAGGTCCTGCTA+TGG 0.503540 8:-83685407 MsaT046352.1:CDS
GAAAACTCGAGTGCTTTAAA+GGG 0.504861 8:-83685643 MsaT046352.1:CDS
AGAATCCAAGGTATTGTTGA+AGG 0.506294 8:+83685114 None:intergenic
TTATTAAAATCCTCACTCAA+TGG 0.507785 8:+83685325 None:intergenic
CAGGAAATGATGATAGAGAG+AGG 0.513398 8:-83686797 MsaT046352.1:CDS
TGTGATCATATAGTGTTGTC+AGG 0.513792 8:-83686816 MsaT046352.1:intron
AGAAGAAGCAAGAGAATCCA+AGG 0.514940 8:+83685102 None:intergenic
AATAAAGGTATCATTACTGA+TGG 0.516274 8:-83686657 MsaT046352.1:CDS
GGACTTAAGTTCATGTTACC+AGG 0.516544 8:+83685571 None:intergenic
TTCAAGCTCCTTGAGCAAGT+TGG 0.519096 8:-83686964 MsaT046352.1:CDS
GATTCTTCTTGATCCAGGTA+AGG 0.519260 8:+83685825 None:intergenic
AACAATGGCTGCTTGTAACT+GGG 0.528436 8:+83685676 None:intergenic
GAATAAAATTTCTCAACTTG+AGG 0.529905 8:+83685013 None:intergenic
GTCACATAAACTCACTATCA+AGG 0.536123 8:+83686412 None:intergenic
TTCACTTATTGTATCATCCA+AGG 0.536142 8:+83684902 None:intergenic
TCTTGTGAAACCAATCCGAT+TGG 0.545613 8:-83686739 MsaT046352.1:CDS
TGTGACTTGATGAATGTTGA+AGG 0.547972 8:-83686234 MsaT046352.1:CDS
ATAAATCACCCATCTGTTGG+AGG 0.552382 8:-83685418 MsaT046352.1:CDS
GTGTGTGAGCTTACTGATGA+AGG 0.556710 8:+83686924 None:intergenic
TAATGCAGGCACTAGTTCCA+TGG 0.559067 8:-83685080 MsaT046352.1:CDS
ATGATGAGGAACGCTCGACT+CGG 0.562718 8:-83686503 MsaT046352.1:CDS
AGGAAATGATGATAGAGAGA+GGG 0.563967 8:-83686796 MsaT046352.1:CDS
TTTCATGTCCAACTTGCTCA+AGG 0.564395 8:+83686956 None:intergenic
TGGAAATTAACCAGTTTCAC+CGG 0.564960 8:-83685606 MsaT046352.1:CDS
ATGTTACTAGATGCATATGT+TGG 0.572114 8:+83685787 None:intergenic
AAATCCTCACTCAATGGAGA+AGG 0.576468 8:+83685331 None:intergenic
ATAGCAGGACCTCCAACAGA+TGG 0.581262 8:+83685409 None:intergenic
GAAACGATGCAATGTCAAGA+TGG 0.581317 8:-83685196 MsaT046352.1:CDS
CCATCTGGATTGAACTTGAG+AGG 0.585944 8:-83685745 MsaT046352.1:CDS
TATAGGAACCACTTGTAGCA+GGG 0.588786 8:+83685368 None:intergenic
AAAGGGTGTTCGAACGTCAG+TGG 0.592037 8:-83685626 MsaT046352.1:CDS
ATTACTTGGGAATGTTGTAA+CGG 0.596089 8:-83685173 MsaT046352.1:CDS
GATAGAGAGAGGGTGATGAA+AGG 0.596610 8:-83686786 MsaT046352.1:CDS
CCTCTCAAGTTCAATCCAGA+TGG 0.601365 8:+83685745 None:intergenic
GTAAACATGCCAGAAATGGA+TGG 0.605525 8:-83686988 MsaT046352.1:CDS
TAGCAGGACCTCCAACAGAT+GGG 0.607030 8:+83685410 None:intergenic
AAGACATCTTCAACCTCCAA+AGG 0.613959 8:+83688178 None:intergenic
ATAAAGGTATCATTACTGAT+GGG 0.617908 8:-83686656 MsaT046352.1:CDS
CCTAAATTGAGAACTGAGCG+AGG 0.617995 8:+83685270 None:intergenic
GCCAGAACATGCATTCCCAC+AGG 0.618067 8:+83688142 None:intergenic
GTGATGAAAGGTGTGATGAA+AGG 0.623017 8:-83686774 MsaT046352.1:CDS
TTACACGCAGCAGCAAAATG+TGG 0.623240 8:-83685143 MsaT046352.1:CDS
AGGGCTTACAAGGGAAAATG+TGG 0.634196 8:-83686214 MsaT046352.1:CDS
ATTAATGGACTATTAGCTTG+GGG 0.634710 8:+83685046 None:intergenic
GTATCTATAGTTAGTCAACT+CGG 0.636343 8:-83686435 MsaT046352.1:CDS
TAATGGTAGAGAGAATGATG+AGG 0.638904 8:-83686517 MsaT046352.1:CDS
TACACGCAGCAGCAAAATGT+GGG 0.639739 8:-83685142 MsaT046352.1:CDS
TGAGCTTACTGATGAAGGGT+AGG 0.644624 8:+83686929 None:intergenic
GTGACTTGATGAATGTTGAA+GGG 0.645884 8:-83686233 MsaT046352.1:CDS
AATGTCAAGATGGATTACTT+GGG 0.659008 8:-83685186 MsaT046352.1:CDS
TGTGTGAGCTTACTGATGAA+GGG 0.665662 8:+83686925 None:intergenic
CTTAAGTTCATGTTACCAGG+TGG 0.668465 8:+83685574 None:intergenic
GAATGTTGAAGGGCTTACAA+GGG 0.675399 8:-83686223 MsaT046352.1:CDS
TCATCATCCCAAACTAAACG+AGG 0.691444 8:+83686474 None:intergenic
TTGGGGTACATTATGGACCA+TGG 0.694419 8:+83685063 None:intergenic
GCTAACAAGAATAAAACCCG+TGG 0.697003 8:-83686600 MsaT046352.1:CDS
AGAACTATGGAATCAAATGG+TGG 0.707711 8:-83684983 MsaT046352.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 83684907 83688215 83684907 ID=MsaG046352
Chr8 mRNA 83684907 83688215 83684907 ID=MsaT046352.1;Parent=MsaG046352
Chr8 exon 83684907 83685953 83684907 ID=MsaT046352.1.exon5;Parent=MsaT046352.1
Chr8 CDS 83684907 83685953 83684907 ID=cds.MsaT046352.1;Parent=MsaT046352.1
Chr8 exon 83686200 83686276 83686200 ID=MsaT046352.1.exon4;Parent=MsaT046352.1
Chr8 CDS 83686200 83686276 83686200 ID=cds.MsaT046352.1;Parent=MsaT046352.1
Chr8 exon 83686427 83686825 83686427 ID=MsaT046352.1.exon3;Parent=MsaT046352.1
Chr8 CDS 83686427 83686825 83686427 ID=cds.MsaT046352.1;Parent=MsaT046352.1
Chr8 exon 83686938 83687090 83686938 ID=MsaT046352.1.exon2;Parent=MsaT046352.1
Chr8 CDS 83686938 83687090 83686938 ID=cds.MsaT046352.1;Parent=MsaT046352.1
Chr8 exon 83688077 83688215 83688077 ID=MsaT046352.1.exon1;Parent=MsaT046352.1
Chr8 CDS 83688077 83688215 83688077 ID=cds.MsaT046352.1;Parent=MsaT046352.1
Gene Sequence

>MsaT046352.1

ATGGCTTTGGAGAATCCTTTGGAGGTTGAAGATGTCTTCGGAGAAGATTTTCCTGTGGGAATGCATGTTCTGGCTGTTGACGACGATCAAACTTGTCTCAAACTGTTGGAAAAGTTTCTTCTCATGTGCAAGTATAATGTTACTACAACTACGAAGTCAGTTGAAGCGCTAGAATTGTTGAGAGAAAAGAGAGATATGTTTGACATTGTAATTAGTGATGTAAACATGCCAGAAATGGATGGATTCAAGCTCCTTGAGCAAGTTGGACATGAAATGGACCTACCCTTCATCATGTTGTCAGGAAATGATGATAGAGAGAGGGTGATGAAAGGTGTGATGAAAGGCGCTTGCGACTATCTTGTGAAACCAATCCGATTGGAAGAGCTTAAGAACATATGGCAACATGTAGTGAGAAAGAAGATTGAAAGTAAGGATCCGAATAAAGGTATCATTACTGATGGGATATGTAATCAAGACACCTCATCTGAAAATATTGCTAACAAGAATAAAACCCGTGGACAAAAAATAAAGGAACAAAGTGAGGATGAAGAAGACGAAGAAGAAAACGCAGAAGAAGATAATGGTAGAGAGAATGATGAGGAACGCTCGACTCGGAAGAAGCCTCGTTTAGTTTGGGATGATGAATTGCATAAAAAATTTGTATCTATAGTTAGTCAACTCGGCCTTGATAAGGCTTATCCTAAGAAAATATGTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCTAGCCATTTACAGAAATACAAACTTAGTCTCAAAAGGCCATCTAAACAGGCTAGAGTAGATGTTGCATTAGATCCTCACCTACAAAAGAATTCAGTAGCTGGATATGGAGATTTGTGTACCTTACCTGGATCAAGAAGAATCTTAAGCAGCACATTGCCAACATATGCATCTAGTAACATGTATTGTCGGCTGAACGCACCATCTGGATTGAACTTGAGAGGAATGAGTTCTTCTGCATTAATCCCTCCACTTCAGTCTCAAAACATTCCCAGTTACAAGCAGCCATTGTTTTTTGCAAGTGAAAACTCGAGTGCTTTAAAGGGTGTTCGAACGTCAGTGGAAATTAACCAGTTTCACCGGAACATTTATCCACCTGGTAACATGAACTTAAGTCCAATTGATGATTCAAGTGCATTTACAGATTCTTCTGGCTTCCAAGACATCAGAGCTAATGTTAATAATGCAAATAGTTTTCTTTCTTGCATCTCAAGCAATCACCTACAAACACATAATTCAAGAGCATTTATAAATCACCCATCTGTTGGAGGTCCTGCTATGGAACAAAAATCTTTTAACCCTGCTACAAGTGGTTCCTATAACTTTGCTTCCAGTCCTTCTCCATTGAGTGAGGATTTTAATAATGATCAAATATCTCACAATAGCTTAAAGTTTGCCTCGCTCAGTTCTCAATTTAGGAAAAGCCCAACTGATTTTTCTTCGACACGCGTCATTGATGTTCCTTTAGAGGAAACGATGCAATGTCAAGATGGATTACTTGGGAATGTTGTAACGGCTTCATGTTACACGCAGCAGCAAAATGTGGGTTCTTCCTTCAACAATACCTTGGATTCTCTTGCTTCTTCTAATGCAGGCACTAGTTCCATGGTCCATAATGTACCCCAAGCTAATAGTCCATTAATCACTCAGATGCCTCAAGTTGAGAAATTTTATTCAGATGAAAGAACTATGGAATCAAATGGTGGTGATTGCTTTTTTGAGCAATTGCTTGATGTAGATGGACTCGTTCAGAATAGTTGTTTGCCTTGGATGATACAATAA

Protein sequence

>MsaT046352.1

MALENPLEVEDVFGEDFPVGMHVLAVDDDQTCLKLLEKFLLMCKYNVTTTTKSVEALELLREKRDMFDIVISDVNMPEMDGFKLLEQVGHEMDLPFIMLSGNDDRERVMKGVMKGACDYLVKPIRLEELKNIWQHVVRKKIESKDPNKGIITDGICNQDTSSENIANKNKTRGQKIKEQSEDEEDEEENAEEDNGRENDEERSTRKKPRLVWDDELHKKFVSIVSQLGLDKAYPKKICDLMNVEGLTRENVASHLQKYKLSLKRPSKQARVDVALDPHLQKNSVAGYGDLCTLPGSRRILSSTLPTYASSNMYCRLNAPSGLNLRGMSSSALIPPLQSQNIPSYKQPLFFASENSSALKGVRTSVEINQFHRNIYPPGNMNLSPIDDSSAFTDSSGFQDIRANVNNANSFLSCISSNHLQTHNSRAFINHPSVGGPAMEQKSFNPATSGSYNFASSPSPLSEDFNNDQISHNSLKFASLSSQFRKSPTDFSSTRVIDVPLEETMQCQDGLLGNVVTASCYTQQQNVGSSFNNTLDSLASSNAGTSSMVHNVPQANSPLITQMPQVEKFYSDERTMESNGGDCFFEQLLDVDGLVQNSCLPWMIQ*