AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046374


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046374 MtrunA17_Chr2g0281511 84.298 121 19 0 1 121 1 121 1.02e-73 214
MsaG046374 MtrunA17_Chr2g0309121 79.508 122 24 1 1 122 1 121 7.01e-68 200
MsaG046374 MtrunA17_Chr3g0081891 83.544 79 13 0 1 79 1 79 2.84e-44 139
MsaG046374 MtrunA17_Chr7g0276661 33.588 131 67 4 7 119 38 166 4.58e-20 80.5
MsaG046374 MtrunA17_Chr8g0372431 29.897 97 68 0 24 120 6 102 6.87e-17 70.5
MsaG046374 MtrunA17_Chr0c01g0489371 40.659 91 52 1 22 110 224 314 1.26e-16 73.9
MsaG046374 MtrunA17_Chr8g0356961 39.326 89 52 1 24 110 77 165 5.36e-16 70.1
MsaG046374 MtrunA17_Chr6g0485871 30.851 94 64 1 16 108 206 299 9.37e-13 63.2
MsaG046374 MtrunA17_Chr7g0228081 31.250 80 55 0 41 120 13 92 2.12e-12 58.5
MsaG046374 MtrunA17_Chr8g0356951 36.264 91 54 2 24 110 217 307 4.78e-12 61.2
MsaG046374 MtrunA17_Chr5g0434641 32.967 91 59 1 22 110 208 298 6.81e-12 60.8
MsaG046374 MtrunA17_Chr5g0430431 40.984 61 36 0 56 116 194 254 3.03e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 22 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGTTACTGCTTCTATTT+TGG 0.123735 8:+83855136 MsaT046374.1:CDS
AAAATTCCAATGTTCATTAT+TGG 0.164838 8:+83855108 MsaT046374.1:CDS
GAAGTCAATGGTGCTGAATT+AGG 0.200131 8:+83855077 MsaT046374.1:CDS
TACCAGTTTCTTCATCAAAA+AGG 0.252196 8:-83855327 None:intergenic
CCTCGACGTGTTGCCGAGAA+TGG 0.307864 8:+83855277 MsaT046374.1:CDS
CGGTCAATAATCCTCCTAAT+AGG 0.355854 8:+83855470 MsaT046374.1:CDS
TTTGGATGGAAACAATGTTT+TGG 0.356448 8:+83855154 MsaT046374.1:CDS
TGTATGCTACCGTCGTTAAC+TGG 0.388446 8:+83855494 MsaT046374.1:CDS
AAGTCAATGGTGCTGAATTA+GGG 0.416476 8:+83855078 MsaT046374.1:CDS
ACGGTAGCATACATCCTATT+AGG 0.440754 8:-83855484 None:intergenic
ATTGGTATACAAACCATTCT+CGG 0.470714 8:-83855290 None:intergenic
CTTGAAAAGTGCCTAAAAGT+TGG 0.477041 8:+83855430 MsaT046374.1:CDS
ATACTTCCAATAATGAACAT+TGG 0.558425 8:-83855114 None:intergenic
GCATGGATCAGAAATACATA+GGG 0.559318 8:+83855386 MsaT046374.1:CDS
AGCATGGATCAGAAATACAT+AGG 0.564126 8:+83855385 MsaT046374.1:CDS
AGAAATACATAGGGAGAGGA+TGG 0.573439 8:+83855395 MsaT046374.1:CDS
GATCAGAAATACATAGGGAG+AGG 0.587262 8:+83855391 MsaT046374.1:CDS
TCACACTGCGTCAAGAAGCA+TGG 0.587686 8:+83855369 MsaT046374.1:CDS
CCATTCTCGGCAACACGTCG+AGG 0.599354 8:-83855277 None:intergenic
GAGATTGGAGTTGAAGTCAA+TGG 0.619642 8:+83855065 MsaT046374.1:CDS
GTAGCATACATCCTATTAGG+AGG 0.633251 8:-83855481 None:intergenic
TAATCAGTTCCAGTTAACGA+CGG 0.726011 8:-83855503 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 83855059 83855522 83855059 ID=MsaG046374
Chr8 mRNA 83855059 83855522 83855059 ID=MsaT046374.1;Parent=MsaG046374
Chr8 exon 83855059 83855175 83855059 ID=MsaT046374.1.exon1;Parent=MsaT046374.1
Chr8 CDS 83855059 83855175 83855059 ID=cds.MsaT046374.1;Parent=MsaT046374.1
Chr8 exon 83855271 83855522 83855271 ID=MsaT046374.1.exon2;Parent=MsaT046374.1
Chr8 CDS 83855271 83855522 83855271 ID=cds.MsaT046374.1;Parent=MsaT046374.1
Gene Sequence

>MsaT046374.1

ATGAATGAGATTGGAGTTGAAGTCAATGGTGCTGAATTAGGGAATCTTCAAAATTCCAATGTTCATTATTGGAAGTATAATGTTACTGCTTCTATTTTGGATGGAAACAATGTTTTGAATTTTCCTCGACGTGTTGCCGAGAATGGTTTGTATACCAATCAATCTAAAATTCTCCTTTTTGATGAAGAAACTGGTAAATCTTATGACTGTGATGTTCACACTGCGTCAAGAAGCATGGATCAGAAATACATAGGGAGAGGATGGTACGACTTTGTTCTTGAAAAGTGCCTAAAAGTTGGTAACGTTGTTTTGTTCACGGTCAATAATCCTCCTAATAGGATGTATGCTACCGTCGTTAACTGGAACTGA

Protein sequence

>MsaT046374.1

MNEIGVEVNGAELGNLQNSNVHYWKYNVTASILDGNNVLNFPRRVAENGLYTNQSKILLFDEETGKSYDCDVHTASRSMDQKYIGRGWYDFVLEKCLKVGNVVLFTVNNPPNRMYATVVNWN*