AlfalfaGEDB | MsaG046393

M. sativa ssp. caerulea / MsaG046393

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009751 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046393	AES92622.1	87.792	557	44	2	1	547	1	543	0.0	1003

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046393	sp\|Q9ZSA2\|CDPKL_ARATH	61.384	549	170	10	1	538	1	518	0.0	659

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046393	tr\|G7JJ65\|G7JJ65_MEDTR	87.792	557	44	2	1	547	1	543	0.0	1003

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000692	MsaG046393	0.814729	2.295978e-51	4.407973e-49
MsaG000828	MsaG046393	0.800681	2.151535e-48	2.954174e-46
MsaG002497	MsaG046393	0.839816	2.333024e-57	9.055288e-55
MsaG002601	MsaG046393	0.823304	2.629608e-53	6.316386e-51
MsaG002797	MsaG046393	0.816804	7.955587e-52	1.610110e-49
MsaG004379	MsaG046393	0.819303	2.180032e-52	4.707393e-50
MsaG006352	MsaG046393	0.812446	7.258150e-51	1.316108e-48
MsaG006420	MsaG046393	0.817739	4.912307e-52	1.018407e-49
MsaG006580	MsaG046393	0.801827	1.257023e-48	1.771284e-46
MsaG006995	MsaG046393	0.803996	4.500862e-49	6.666521e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046393	MtrunA17_Chr4g0074791	88.665	547	48	1	1	547	1	533	0.0	1001
MsaG046393	MtrunA17_Chr4g0074811	73.879	513	122	3	46	547	28	539	0.0	765
MsaG046393	MtrunA17_Chr5g0444171	64.800	500	157	6	59	547	49	540	0.0	664
MsaG046393	MtrunA17_Chr3g0098951	60.531	565	178	10	1	547	1	538	0.0	658
MsaG046393	MtrunA17_Chr1g0157131	62.472	453	158	3	96	537	61	512	0.0	590
MsaG046393	MtrunA17_Chr8g0387671	57.114	492	189	6	70	541	19	508	0.0	567
MsaG046393	MtrunA17_Chr5g0441691	56.405	484	197	5	70	541	29	510	0.0	555
MsaG046393	MtrunA17_Chr0c02g0489761	55.833	480	192	4	73	541	50	520	0.0	554
MsaG046393	MtrunA17_Chr5g0397101	55.837	514	207	6	40	541	3	508	0.0	551
MsaG046393	MtrunA17_Chr3g0131181	55.556	450	185	5	101	537	19	466	2.45e-175	505

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG046393	AT4G04720.2	61.384	549	170	10	1	538	1	518	659
MsaG046393	AT4G04720.1	61.384	549	170	10	1	538	1	518	659
MsaG046393	AT3G20410.2	60.517	542	192	8	13	543	5	535	649
MsaG046393	AT3G20410.1	60.517	542	192	8	13	543	5	535	649
MsaG046393	AT4G21940.1	58.435	575	187	11	1	547	1	551	643
MsaG046393	AT1G50700.1	62.851	498	166	5	61	547	32	521	642
MsaG046393	AT4G21940.2	58.435	575	187	11	1	547	1	551	642
MsaG046393	AT1G50700.2	59.733	524	166	5	61	547	32	547	632
MsaG046393	AT1G61950.1	59.674	491	184	5	60	538	50	538	598
MsaG046393	AT1G76040.2	61.283	452	162	4	97	537	100	549	579

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Find 114 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATGGAATAGTTGACG+AGG	0.717011	8:+84043077	MsaT046393.1:CDS
AACATATTCTCAAGGCATTT+CGG	0.355438	8:+84042576	MsaT046393.1:CDS
AAGACAGGCTTGGCTCGAAT+TGG	0.370556	8:+84042355	MsaT046393.1:CDS
AAGATTTATAATGATATGGT+AGG	0.572498	8:+84040879	MsaT046393.1:CDS
AAGCACAATGTTCTAGCACA+AGG	0.656541	8:-84040481	None:intergenic
AATAAAGGAAATAGTTTCTG+AGG	0.544625	8:+84043104	MsaT046393.1:CDS
AATATCTTCTCTATCCGCTT+TGG	0.401321	8:-84040369	None:intergenic
AATATGGACACTGATCGTAG+TGG	0.763896	8:+84042310	MsaT046393.1:CDS
AATTCTCCGGATTTAAGTCA+CGG	0.589241	8:-84040625	None:intergenic
AATTGAGTAGAGGCAAATTT+GGG	0.349613	8:+84040270	MsaT046393.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	84039930	84043292	84039930	ID=MsaG046393
Chr8	mRNA	84039930	84043292	84039930	ID=MsaT046393.1;Parent=MsaG046393
Chr8	exon	84039930	84040722	84039930	ID=MsaT046393.1.exon1;Parent=MsaT046393.1
Chr8	CDS	84039930	84040722	84039930	ID=cds.MsaT046393.1;Parent=MsaT046393.1
Chr8	exon	84040877	84041020	84040877	ID=MsaT046393.1.exon2;Parent=MsaT046393.1
Chr8	CDS	84040877	84041020	84040877	ID=cds.MsaT046393.1;Parent=MsaT046393.1
Chr8	exon	84041107	84041259	84041107	ID=MsaT046393.1.exon3;Parent=MsaT046393.1
Chr8	CDS	84041107	84041259	84041107	ID=cds.MsaT046393.1;Parent=MsaT046393.1
Chr8	exon	84041975	84042090	84041975	ID=MsaT046393.1.exon4;Parent=MsaT046393.1
Chr8	CDS	84041975	84042090	84041975	ID=cds.MsaT046393.1;Parent=MsaT046393.1
Chr8	exon	84042256	84042390	84042256	ID=MsaT046393.1.exon5;Parent=MsaT046393.1
Chr8	CDS	84042256	84042390	84042256	ID=cds.MsaT046393.1;Parent=MsaT046393.1
Chr8	exon	84042494	84042621	84042494	ID=MsaT046393.1.exon6;Parent=MsaT046393.1
Chr8	CDS	84042494	84042621	84042494	ID=cds.MsaT046393.1;Parent=MsaT046393.1
Chr8	exon	84043041	84043140	84043041	ID=MsaT046393.1.exon7;Parent=MsaT046393.1
Chr8	CDS	84043041	84043140	84043041	ID=cds.MsaT046393.1;Parent=MsaT046393.1
Chr8	exon	84043218	84043292	84043218	ID=MsaT046393.1.exon8;Parent=MsaT046393.1
Chr8	CDS	84043218	84043292	84043218	ID=cds.MsaT046393.1;Parent=MsaT046393.1

Gene Sequence

>MsaT046393.1

ATGGGTTGTTACACTAGCAAGCCAGAGGTGGACAAGTTTGCTGCCCATCGTGGATTTGCCGCCATCACTGCCGATGATGATACTACTTATCGGTACGTCACTGTTTCAGCATATTCCAATCAGATTCAGATCACTACAACACCACCAAAACTGGACTCACTTGTTTCACCAGTGACACAGACACCATCAAAACCAGACTCACTTGCTTCACCGGTGACAACACCACCAAATCCAGAACCCTCTCCCACAGTCCAAAATGTGAAAACCGTGCGAAAAACTCACAAAACCATATTAGAAAAACCCTACGAAGATATAAAAAAGTTGTACACTTTTGGTAAAGAATTGAGTAGAGGCAAATTTGGGATTACTTATTTCTGCACTGAGAATTCCACTGGCCGAAATTATGCATGTAGGTCTATATTAAAGAGGAAGCTTGTGTCCAAAGCGGATAGAGAAGATATTAAAAGAGAGATTCAGATTCTGCAGCATTTGTCTGGTCAACCAAATATTGTGGAATTCAAAGGTGCTTATGAGGATAGGTTATCTATTCACCTTGTGCTAGAACATTGTGCTTTCGGGGAACTATTTGATAGAATCATTGCTCAGCCTCAAGGTTATTCAGAGAGAGTTGTTGCATCCTTATGCAGGTGTATTGTTAATGTTGTGCACACTTGTCATTGCATGGGTGTTATGCACCGTGACTTAAATCCGGAGAATTTCTTGTTCTCTACCAAAGCTAAAGCTGTAGCACTCAAGGCTGTTGATTTTAGATTCTCTGTCTTCATTGAAGAAGGAAAGATTTATAATGATATGGTAGGCAGTGGTTGCTATGTTGCTCCTGAGGTACTGCTTCGTAGTTATGGAAAAGAAATAGACATTTGGAGTGCAGGCATCATATTGTATATTCTACTTAGCGGTGGACCGCCTTTTTCACCTGAAACTGATAAGGGACTATTGAATGCCATATTGGAGGGTGAACTTGACTTAGTGAGTGAGCCATGGCCATCAATATCAGACAGTGCTAAAGATCTAGTCAAGAAGATGCTAACACCAGATCCAAAGAAGAGAATTACTTCTAAACAAGTCCTTGAACACCCGTGGATGAGAGACGGATGTGAAGCCTCTGATAAACTGATTGATAATGCAGTTCTATCTAGAATGAAACAATTCAGGGCATTAAATACGTTCAAGAAACTTGGGTTGAAGGTTATGGCTGAAAATATAGCGGAAGAGGTTAAAGATCTCAAGGAAACGTTTGAAAATATGGACACTGATCGTAGTGGCACCATCACCTGTGAAGAATTGAAGACAGGCTTGGCTCGAATTGGATCAGAACTGTCCGCCGATGTTGATGGAAAAGGGTCGATTGACTATCTTGAATTCATATCGGCTGCAATGCATAGGTACAGGCTTGAGCGAGATGAACATATTCTCAAGGCATTTCGGTATTTTGATAAAGACAGTAGTGGGCATATTACTAGAGAGGAATTGGAGACTGCATTGACAAAGCATGGAATAGTTGACGAGGCAAAAATAAAGGAAATAGTTTCTGAGGTGTATACAGATAATGATGGGAAAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGTAATGCCACACCAGGGACCAGTATTTTAA

Protein sequence

>MsaT046393.1

MGCYTSKPEVDKFAAHRGFAAITADDDTTYRYVTVSAYSNQIQITTTPPKLDSLVSPVTQTPSKPDSLASPVTTPPNPEPSPTVQNVKTVRKTHKTILEKPYEDIKKLYTFGKELSRGKFGITYFCTENSTGRNYACRSILKRKLVSKADREDIKREIQILQHLSGQPNIVEFKGAYEDRLSIHLVLEHCAFGELFDRIIAQPQGYSERVVASLCRCIVNVVHTCHCMGVMHRDLNPENFLFSTKAKAVALKAVDFRFSVFIEEGKIYNDMVGSGCYVAPEVLLRSYGKEIDIWSAGIILYILLSGGPPFSPETDKGLLNAILEGELDLVSEPWPSISDSAKDLVKKMLTPDPKKRITSKQVLEHPWMRDGCEASDKLIDNAVLSRMKQFRALNTFKKLGLKVMAENIAEEVKDLKETFENMDTDRSGTITCEELKTGLARIGSELSADVDGKGSIDYLEFISAAMHRYRLERDEHILKAFRYFDKDSSGHITREELETALTKHGIVDEAKIKEIVSEVYTDNDGKINYEEFCAMMRSVMPHQGPVF*