AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046419


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046419 MtrunA17_Chr4g0075201 93.400 500 26 6 1 495 1 498 0.0 843
MsaG046419 MtrunA17_Chr2g0288871 54.808 520 161 21 1 476 43 532 1.62e-139 413
MsaG046419 MtrunA17_Chr2g0322391 49.614 518 195 16 34 494 81 589 5.55e-129 387
MsaG046419 MtrunA17_Chr3g0099641 41.538 455 207 11 34 473 34 444 6.83e-101 311
MsaG046419 MtrunA17_Chr7g0270831 39.914 466 188 15 41 484 17 412 3.14e-81 259
MsaG046419 MtrunA17_Chr5g0419241 97.196 107 3 0 188 294 1 107 2.37e-72 224
MsaG046419 MtrunA17_Chr4g0025061 50.588 255 107 4 232 481 328 568 1.20e-69 233
MsaG046419 MtrunA17_Chr4g0024391 55.042 238 98 4 242 474 207 440 7.40e-69 228
MsaG046419 MtrunA17_Chr4g0025051 56.846 241 101 3 242 480 313 552 1.76e-68 230
MsaG046419 MtrunA17_Chr2g0302391 33.596 381 215 9 117 489 68 418 1.63e-52 183
MsaG046419 MtrunA17_Chr7g0216891 31.224 474 196 16 109 474 32 483 4.11e-48 174
MsaG046419 MtrunA17_Chr4g0060271 37.209 344 164 8 94 385 46 389 2.51e-43 162
MsaG046419 MtrunA17_Chr4g0051181 84.416 77 12 0 248 324 227 303 4.45e-42 156
MsaG046419 MtrunA17_Chr4g0001361 33.190 232 97 8 239 470 137 310 8.72e-29 115
MsaG046419 MtrunA17_Chr2g0333851 27.778 360 157 13 113 470 51 309 2.25e-27 112
MsaG046419 MtrunA17_Chr1g0150281 33.051 236 128 7 104 338 8 214 7.04e-27 109
MsaG046419 MtrunA17_Chr1g0150271 32.599 227 95 6 116 340 7 177 2.64e-26 107
MsaG046419 MtrunA17_Chr3g0136961 27.419 372 165 9 106 473 15 285 2.29e-25 105
MsaG046419 MtrunA17_Chr3g0079691 48.039 102 52 1 225 326 456 556 1.54e-24 107
MsaG046419 MtrunA17_Chr3g0079691 41.935 93 52 2 233 325 249 339 1.12e-14 76.6
MsaG046419 MtrunA17_Chr3g0101131 43.182 132 60 4 247 364 398 528 3.74e-24 105
MsaG046419 MtrunA17_Chr3g0101131 49.180 61 29 2 264 324 243 301 9.48e-12 67.4
MsaG046419 MtrunA17_Chr3g0106491 54.430 79 35 1 246 324 347 424 5.09e-24 105
MsaG046419 MtrunA17_Chr3g0106491 38.298 94 52 3 233 326 171 258 4.51e-13 71.2
MsaG046419 MtrunA17_Chr5g0445311 55.000 80 35 1 247 326 347 425 5.88e-24 105
MsaG046419 MtrunA17_Chr5g0445311 50.820 61 28 2 264 324 200 258 2.54e-12 68.9
MsaG046419 MtrunA17_Chr7g0243891 42.029 138 63 4 241 375 351 474 1.07e-23 104
MsaG046419 MtrunA17_Chr7g0243891 46.575 73 32 3 252 324 209 274 1.41e-11 66.6
MsaG046419 MtrunA17_Chr5g0432161 52.381 84 39 1 243 326 400 482 3.88e-23 102
MsaG046419 MtrunA17_Chr5g0432161 43.590 78 42 2 264 341 244 319 3.02e-13 72.0
MsaG046419 MtrunA17_Chr4g0004911 53.165 79 36 1 246 324 318 395 4.20e-23 102
MsaG046419 MtrunA17_Chr4g0004911 41.333 75 41 2 250 324 172 243 1.44e-13 72.8
MsaG046419 MtrunA17_Chr5g0447701 44.643 112 59 3 231 341 218 327 4.26e-23 101
MsaG046419 MtrunA17_Chr2g0294231 50.000 82 40 1 248 329 187 267 4.36e-23 100
MsaG046419 MtrunA17_Chr1g0150801 52.703 74 34 1 249 322 87 159 5.90e-23 95.5
MsaG046419 MtrunA17_Chr7g0218081 51.190 84 40 1 243 326 389 471 6.32e-23 102
MsaG046419 MtrunA17_Chr7g0218081 52.459 61 27 2 264 324 228 286 7.21e-13 70.9
MsaG046419 MtrunA17_Chr7g0270191 46.316 95 46 2 248 342 129 218 8.31e-23 98.6
MsaG046419 MtrunA17_Chr7g0224801 52.113 71 33 1 253 323 82 151 2.30e-22 94.0
MsaG046419 MtrunA17_Chr5g0418191 50.617 81 39 1 246 326 302 381 5.68e-22 98.2
MsaG046419 MtrunA17_Chr5g0418191 37.615 109 64 3 264 372 151 255 7.82e-13 70.5
MsaG046419 MtrunA17_Chr7g0249311 51.250 80 38 1 247 326 375 453 9.86e-22 99.0
MsaG046419 MtrunA17_Chr7g0249311 48.333 60 29 2 265 324 180 237 4.78e-11 65.5
MsaG046419 MtrunA17_Chr7g0249301 51.250 80 38 1 247 326 275 353 1.50e-21 96.3
MsaG046419 MtrunA17_Chr7g0249301 46.154 65 33 2 260 324 58 120 4.21e-11 64.7
MsaG046419 MtrunA17_Chr4g0042831 46.316 95 44 2 232 326 252 339 2.06e-21 96.3
MsaG046419 MtrunA17_Chr1g0194481 51.948 77 36 1 248 324 142 217 2.68e-21 94.7
MsaG046419 MtrunA17_Chr8g0386241 45.570 79 42 1 249 327 88 165 6.30e-21 90.1
MsaG046419 MtrunA17_Chr4g0051881 44.554 101 49 2 251 345 165 264 1.19e-20 93.2
MsaG046419 MtrunA17_Chr4g0068541 50.649 77 37 1 248 324 192 267 2.43e-20 93.2
MsaG046419 MtrunA17_Chr7g0263531 41.489 94 54 1 231 324 328 420 4.85e-20 92.4
MsaG046419 MtrunA17_Chr7g0263531 50.000 60 28 2 265 324 190 247 9.91e-12 67.0
MsaG046419 MtrunA17_Chr5g0418781 47.561 82 42 1 240 321 100 180 5.42e-20 90.1
MsaG046419 MtrunA17_Chr8g0383251 45.946 74 39 1 251 324 95 167 1.18e-19 86.7
MsaG046419 MtrunA17_Chr7g0270051 52.703 74 32 1 264 337 53 123 2.71e-19 87.8
MsaG046419 MtrunA17_Chr4g0074001 50.633 79 36 2 248 324 343 420 2.86e-19 90.9
MsaG046419 MtrunA17_Chr5g0443131 50.000 74 36 1 251 324 144 216 1.15e-18 86.7
MsaG046419 MtrunA17_Chr7g0248721 47.500 80 40 2 243 322 120 197 1.59e-18 84.3
MsaG046419 MtrunA17_Chr3g0129361 48.000 75 38 1 247 321 127 200 1.61e-18 84.3
MsaG046419 MtrunA17_Chr1g0147881 48.649 74 38 0 248 321 246 319 1.93e-18 86.7
MsaG046419 MtrunA17_Chr8g0335811 43.902 82 45 1 240 321 130 210 2.61e-18 84.0
MsaG046419 MtrunA17_Chr3g0129321 47.297 74 38 1 251 324 105 177 3.96e-18 82.8
MsaG046419 MtrunA17_Chr5g0401821 48.684 76 39 0 248 323 183 258 6.19e-18 84.0
MsaG046419 MtrunA17_Chr4g0053281 48.101 79 41 0 248 326 250 328 7.19e-18 84.7
MsaG046419 MtrunA17_Chr8g0379461 52.113 71 29 1 264 334 76 141 1.49e-17 82.0
MsaG046419 MtrunA17_Chr2g0319961 39.623 106 50 2 233 324 35 140 2.33e-17 82.0
MsaG046419 MtrunA17_Chr8g0348311 52.113 71 34 0 264 334 155 225 2.76e-17 83.2
MsaG046419 MtrunA17_Chr8g0383351 47.368 76 38 2 247 321 142 216 3.93e-17 80.9
MsaG046419 MtrunA17_Chr7g0228941 47.887 71 37 0 251 321 39 109 4.54e-17 77.4
MsaG046419 MtrunA17_Chr1g0188941 41.667 84 48 1 241 324 28 110 4.91e-17 77.0
MsaG046419 MtrunA17_Chr1g0184691 52.459 61 29 0 265 325 294 354 6.60e-17 82.4
MsaG046419 MtrunA17_Chr2g0284321 51.613 62 30 0 264 325 35 96 8.56e-17 79.3
MsaG046419 MtrunA17_Chr4g0071521 47.297 74 39 0 248 321 229 302 9.03e-17 81.3
MsaG046419 MtrunA17_Chr2g0293481 48.571 70 36 0 265 334 268 337 1.33e-16 82.4
MsaG046419 MtrunA17_Chr3g0139021 45.946 74 40 0 248 321 298 371 5.56e-16 79.7
MsaG046419 MtrunA17_Chr2g0289181 34.074 135 79 3 259 383 9 143 6.63e-16 77.0
MsaG046419 MtrunA17_Chr7g0248691 37.607 117 71 2 220 334 108 224 7.75e-16 78.6
MsaG046419 MtrunA17_Chr6g0485431 48.000 75 37 2 251 324 141 214 1.10e-14 75.5
MsaG046419 MtrunA17_Chr8g0387501 44.286 70 39 0 265 334 130 199 1.27e-14 74.3
MsaG046419 MtrunA17_Chr7g0238921 52.308 65 30 1 264 328 124 187 1.39e-14 74.7
MsaG046419 MtrunA17_Chr1g0189391 43.056 72 39 2 251 321 84 154 9.38e-14 72.4
MsaG046419 MtrunA17_Chr1g0202461 43.421 76 43 0 265 340 262 337 1.70e-13 72.0
MsaG046419 MtrunA17_Chr3g0126391 53.333 60 26 1 263 320 132 191 5.51e-13 70.1
MsaG046419 MtrunA17_Chr5g0432071 38.462 78 46 2 264 341 104 179 1.29e-12 67.0
MsaG046419 MtrunA17_Chr8g0347251 47.826 69 34 1 263 329 135 203 1.78e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046419 AT1G62300.1 50.688 509 186 17 10 473 50 538 4.44e-125 376
MsaG046419 AT4G04450.1 47.773 494 189 15 34 473 25 503 6.05e-124 372
MsaG046419 AT4G22070.4 47.776 517 172 14 33 476 26 517 1.12e-112 343
MsaG046419 AT4G22070.3 47.776 517 172 14 33 476 26 517 1.12e-112 343
MsaG046419 AT4G22070.2 47.776 517 172 14 33 476 26 517 1.12e-112 343
MsaG046419 AT4G22070.1 47.776 517 172 14 33 476 26 517 1.12e-112 343
MsaG046419 AT4G04450.2 49.761 418 158 13 99 473 1 409 6.31e-110 333
MsaG046419 AT4G01720.1 45.312 384 169 15 103 470 85 443 2.17e-66 222
MsaG046419 AT5G15130.2 44.118 272 115 5 236 475 157 423 8.91e-50 178
MsaG046419 AT5G15130.1 44.118 272 115 5 236 475 199 465 1.17e-49 179
MsaG046419 AT1G68150.1 42.194 237 110 6 120 345 96 316 6.01e-47 167
MsaG046419 AT1G18860.1 42.069 290 107 8 247 475 222 511 6.36e-44 162
MsaG046419 AT1G69810.1 36.364 308 155 10 114 387 22 322 4.72e-38 143
MsaG046419 AT1G69810.2 54.930 142 58 3 247 387 128 264 2.31e-36 137
MsaG046419 AT4G31800.1 35.270 241 125 5 111 342 36 254 2.97e-33 128
MsaG046419 AT1G80840.1 34.034 238 108 7 98 324 7 206 3.77e-31 122
MsaG046419 AT2G25000.1 32.870 216 103 4 113 328 37 210 1.11e-26 109
MsaG046419 AT2G25000.2 33.173 208 97 4 121 328 2 167 2.34e-26 107
MsaG046419 AT2G25000.4 33.173 208 97 4 121 328 2 167 2.34e-26 107
MsaG046419 AT2G25000.3 33.173 208 97 4 121 328 24 189 3.36e-26 107
MsaG046419 AT4G31800.2 55.000 80 36 0 263 342 110 189 3.56e-25 104
MsaG046419 AT2G38470.1 53.086 81 37 1 246 326 344 423 2.74e-24 106
MsaG046419 AT2G38470.1 46.575 73 36 3 252 324 173 242 8.09e-13 70.9
MsaG046419 AT4G26640.5 55.128 78 34 1 247 324 188 264 7.04e-24 103
MsaG046419 AT4G26640.5 38.095 84 50 2 241 324 12 93 4.51e-12 68.2
MsaG046419 AT4G26640.6 55.128 78 34 1 247 324 188 264 7.04e-24 103
MsaG046419 AT4G26640.6 38.095 84 50 2 241 324 12 93 4.51e-12 68.2
MsaG046419 AT4G26640.4 55.128 78 34 1 247 324 188 264 7.04e-24 103
MsaG046419 AT4G26640.4 38.095 84 50 2 241 324 12 93 4.51e-12 68.2
MsaG046419 AT4G26640.3 55.128 78 34 1 247 324 188 264 7.04e-24 103
MsaG046419 AT4G26640.3 38.095 84 50 2 241 324 12 93 4.51e-12 68.2
MsaG046419 AT4G26640.7 55.128 78 34 1 247 324 324 400 1.54e-23 103
MsaG046419 AT4G26640.7 38.095 84 50 2 241 324 148 229 6.06e-12 68.2
MsaG046419 AT4G26640.1 55.128 78 34 1 247 324 292 368 1.67e-23 103
MsaG046419 AT4G26640.1 38.095 84 50 2 241 324 116 197 6.29e-12 68.2
MsaG046419 AT4G26640.2 55.128 78 34 1 247 324 364 440 2.01e-23 103
MsaG046419 AT4G26640.2 38.095 84 50 2 241 324 188 269 6.16e-12 68.6
MsaG046419 AT5G56270.1 50.000 90 44 1 237 326 460 548 2.90e-23 103
MsaG046419 AT5G56270.1 49.180 61 29 2 265 325 274 332 1.90e-11 67.0
MsaG046419 AT5G26170.1 52.778 72 33 1 250 321 99 169 3.85e-23 96.7
MsaG046419 AT2G04880.2 47.674 86 44 1 243 328 262 346 4.88e-23 102
MsaG046419 AT2G04880.2 31.081 148 82 5 262 398 109 247 6.17e-13 71.2
MsaG046419 AT2G04880.1 47.674 86 44 1 243 328 286 370 6.25e-23 102
MsaG046419 AT2G04880.1 47.143 70 34 3 262 330 109 176 1.46e-12 70.1
MsaG046419 AT1G29860.1 46.392 97 48 2 248 344 120 212 6.25e-23 99.0
MsaG046419 AT5G49520.1 51.948 77 36 1 248 324 205 280 7.82e-23 100
MsaG046419 AT5G07100.2 48.276 87 44 1 238 324 115 200 8.94e-23 97.1
MsaG046419 AT5G07100.2 39.189 74 44 1 264 337 24 96 4.03e-11 63.2
MsaG046419 AT5G07100.4 48.276 87 44 1 238 324 115 200 8.94e-23 97.1
MsaG046419 AT5G07100.4 39.189 74 44 1 264 337 24 96 4.03e-11 63.2
MsaG046419 AT5G07100.5 48.276 87 44 1 238 324 115 200 8.94e-23 97.1
MsaG046419 AT5G07100.5 39.189 74 44 1 264 337 24 96 4.03e-11 63.2
MsaG046419 AT5G07100.3 48.276 87 44 1 238 324 115 200 8.94e-23 97.1
MsaG046419 AT5G07100.3 39.189 74 44 1 264 337 24 96 4.03e-11 63.2
MsaG046419 AT1G13960.2 43.697 119 53 4 207 324 210 315 1.19e-22 99.8
MsaG046419 AT1G13960.2 49.180 61 29 2 264 324 76 134 6.23e-12 67.4
MsaG046419 AT1G13960.1 51.190 84 40 1 241 324 386 468 1.28e-22 101
MsaG046419 AT1G13960.1 49.180 61 29 2 264 324 229 287 5.42e-12 68.6
MsaG046419 AT5G07100.1 48.276 87 44 1 238 324 208 293 1.37e-22 98.6
MsaG046419 AT5G07100.1 39.189 74 44 1 264 337 117 189 9.03e-11 63.5
MsaG046419 AT2G03340.1 48.837 86 43 1 241 326 392 476 1.25e-21 98.2
MsaG046419 AT2G03340.1 49.180 61 29 2 264 324 250 308 2.58e-12 69.3
MsaG046419 AT5G13080.1 53.425 73 33 1 251 323 54 125 1.67e-21 91.3
MsaG046419 AT4G18170.1 51.948 77 36 1 248 324 156 231 1.70e-21 95.5
MsaG046419 AT2G47260.1 45.161 93 50 1 240 332 150 241 2.05e-21 95.9
MsaG046419 AT1G64000.1 45.882 85 45 1 238 322 88 171 2.45e-21 92.0
MsaG046419 AT5G41570.1 51.250 80 37 2 244 322 77 155 5.95e-21 90.5
MsaG046419 AT2G46130.1 47.126 87 45 1 236 322 2 87 7.59e-21 88.2
MsaG046419 AT4G31800.3 32.500 200 104 5 111 301 36 213 1.04e-20 91.7
MsaG046419 AT1G55600.1 43.333 90 50 1 237 326 280 368 1.98e-20 94.4
MsaG046419 AT4G26440.1 41.071 112 63 2 237 348 345 453 2.00e-20 94.7
MsaG046419 AT3G01080.1 46.429 84 44 1 241 324 283 365 2.44e-20 93.6
MsaG046419 AT3G01080.1 49.180 61 29 2 264 324 167 225 7.75e-11 64.3
MsaG046419 AT3G01080.2 49.367 79 39 1 246 324 326 403 2.69e-20 94.0
MsaG046419 AT3G01080.2 49.180 61 29 2 264 324 205 263 8.24e-11 64.7
MsaG046419 AT3G62340.1 53.165 79 36 1 251 329 105 182 2.78e-20 91.3
MsaG046419 AT4G30935.1 41.176 119 58 3 231 341 298 412 3.70e-20 93.6
MsaG046419 AT1G69310.4 45.783 83 44 1 239 321 122 203 3.94e-20 90.9
MsaG046419 AT1G69310.2 45.783 83 44 1 239 321 122 203 3.94e-20 90.9
MsaG046419 AT1G69310.1 45.783 83 44 1 239 321 122 203 3.94e-20 90.9
MsaG046419 AT2G30250.1 50.000 80 39 1 247 326 311 389 4.26e-20 92.8
MsaG046419 AT5G46350.1 50.000 74 36 1 251 324 170 242 4.54e-20 91.7
MsaG046419 AT3G01970.1 51.389 72 34 1 250 321 51 121 1.46e-19 85.9
MsaG046419 AT2G23320.1 59.322 59 24 0 265 323 241 299 1.06e-18 87.4
MsaG046419 AT5G64810.1 47.887 71 36 1 251 321 97 166 1.10e-18 84.7
MsaG046419 AT2G30590.1 50.000 82 40 1 248 328 297 378 1.12e-18 88.2
MsaG046419 AT3G58710.1 42.056 107 47 2 233 324 25 131 1.24e-18 86.3
MsaG046419 AT3G58710.2 42.453 106 47 2 233 324 25 130 2.02e-18 85.9
MsaG046419 AT5G28650.1 62.264 53 20 0 269 321 267 319 3.85e-18 85.9
MsaG046419 AT2G44745.1 46.667 75 39 1 247 321 128 201 3.98e-18 83.6
MsaG046419 AT1G29280.1 52.459 61 29 0 264 324 74 134 7.65e-18 84.0
MsaG046419 AT4G39410.1 48.000 75 38 1 247 321 206 279 9.60e-18 84.3
MsaG046419 AT3G04670.1 57.895 57 24 0 265 321 263 319 2.24e-17 83.6
MsaG046419 AT4G24240.1 48.684 76 39 0 248 323 265 340 3.30e-17 83.6
MsaG046419 AT4G31550.1 48.649 74 38 0 248 321 230 303 3.55e-17 83.2
MsaG046419 AT4G31550.2 48.649 74 38 0 248 321 229 302 3.58e-17 82.8
MsaG046419 AT2G24570.1 48.649 74 38 0 248 321 227 300 5.15e-17 82.4
MsaG046419 AT4G01250.1 40.426 94 51 1 246 334 105 198 1.47e-16 80.9
MsaG046419 AT5G52830.1 46.753 77 41 0 258 334 159 235 1.85e-16 81.3
MsaG046419 AT2G37260.3 45.977 87 41 3 259 340 264 349 1.85e-16 81.3
MsaG046419 AT2G37260.3 43.243 74 40 2 265 338 86 157 7.30e-14 73.2
MsaG046419 AT2G37260.2 45.977 87 41 3 259 340 262 347 1.99e-16 81.3
MsaG046419 AT2G37260.2 43.243 74 40 2 265 338 84 155 7.59e-14 73.2
MsaG046419 AT2G34830.1 46.053 76 40 1 250 324 200 275 2.02e-16 81.6
MsaG046419 AT1G30650.1 46.053 76 40 1 250 324 202 277 2.46e-16 81.6
MsaG046419 AT2G34830.2 46.053 76 40 1 250 324 209 284 2.51e-16 81.6
MsaG046419 AT2G37260.1 45.977 87 41 3 259 340 344 429 3.98e-16 80.9
MsaG046419 AT2G37260.1 43.243 74 40 2 265 338 166 237 1.22e-13 73.2
MsaG046419 AT2G46130.2 43.678 87 44 2 236 322 2 83 7.39e-16 73.9
MsaG046419 AT4G23550.1 41.975 81 47 0 259 339 135 215 1.31e-15 78.2
MsaG046419 AT1G69310.3 42.169 83 43 2 239 321 122 199 3.53e-15 76.3
MsaG046419 AT5G43290.1 35.455 110 52 3 221 329 87 178 1.17e-14 74.7
MsaG046419 AT5G45050.2 40.449 89 41 1 264 340 1152 1240 2.10e-13 73.6
MsaG046419 AT5G45050.1 40.449 89 41 1 264 340 1180 1268 2.28e-13 73.6
MsaG046419 AT5G45050.4 40.449 89 41 1 264 340 1041 1129 2.46e-13 73.2
MsaG046419 AT2G21900.1 43.548 62 34 1 263 324 108 168 2.89e-13 69.3
MsaG046419 AT2G46400.1 42.500 80 44 1 243 320 83 162 3.36e-12 67.8
MsaG046419 AT5G24110.1 50.000 60 28 1 263 320 112 171 5.28e-12 67.0
MsaG046419 AT5G45260.1 37.255 102 57 3 240 339 1189 1285 7.58e-12 68.6
MsaG046419 AT2G40740.1 35.849 106 51 3 264 352 173 278 3.02e-11 64.7
MsaG046419 AT2G40740.3 35.849 106 51 3 264 352 182 287 3.49e-11 64.7
MsaG046419 AT3G01080.3 49.180 61 29 2 264 324 205 263 4.61e-11 64.7

Find 125 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGAAGGCCGGAGAATT+TGG 0.150973 8:+84304416 None:intergenic
AAGAATTCTGGCTAGTAAAT+TGG 0.190593 8:+84304626 None:intergenic
TCAGCATTTCCTTCAGCTTT+TGG 0.196513 8:+84305641 None:intergenic
GCTGCTACTGTGTTACTATC+TGG 0.288928 8:-84304681 MsaT046419.1:CDS
GGGATTACTGTTATTGTTGC+TGG 0.289882 8:+84304257 None:intergenic
GGCATTGGAGGGGTTTAATC+TGG 0.291166 8:+84305245 None:intergenic
GGGAGGAGCAGCACCAATTA+TGG 0.310343 8:+84304278 None:intergenic
GAGGCTGTCCAAGCTGGAAT+TGG 0.315291 8:+84304496 None:intergenic
CACTTCCGGTGTTAGTAATA+AGG 0.320090 8:+84305975 None:intergenic
AGAATTCTGGCTAGTAAATT+GGG 0.323046 8:+84304627 None:intergenic
TTCTGAGGTGTGCATGGTTC+AGG 0.327374 8:+84305333 None:intergenic
ATCAGAACTAGTACAACTTT+TGG 0.338708 8:-84305283 MsaT046419.1:CDS
CACCATTGATTGATCACTTC+CGG 0.338711 8:+84305961 None:intergenic
GGATGCCAATGGCGAAAATA+TGG 0.339559 8:-84305036 MsaT046419.1:CDS
GGTAGCACTGTTGATGATAT+TGG 0.345701 8:+84304236 None:intergenic
GAAACATCATCAAGTTGTTC+TGG 0.348285 8:+84306436 None:intergenic
CCTGATCATGTTCTGTGGTT+TGG 0.349953 8:+84305551 None:intergenic
GCTGCTATCTCCTCCATAAT+TGG 0.361075 8:-84304291 MsaT046419.1:CDS
TGCTTGATCAGCGGCATTGG+AGG 0.372243 8:+84305233 None:intergenic
GTAGCACTGTTGATGATATT+GGG 0.374246 8:+84304237 None:intergenic
GCGAGTGCTGCCGTGAAGTT+TGG 0.385939 8:+84304315 None:intergenic
CGGCATGAATCGTGTAACTA+TGG 0.386196 8:-84306500 MsaT046419.1:CDS
CTTGGACAGCCTCAAAACTT+TGG 0.392430 8:-84304486 MsaT046419.1:CDS
GTTCTGTTGCTGTTGCATTA+AGG 0.395721 8:+84305573 None:intergenic
AGAGCAATTAGGAAGAATTC+TGG 0.399082 8:+84304614 None:intergenic
TTACAGATGCACAATGGCTC+TGG 0.402318 8:-84304974 MsaT046419.1:CDS
AGACTCACTTGTTTGCGAAC+GGG 0.403359 8:+84304946 None:intergenic
AGTTCTGATGCGTCTGGATC+AGG 0.404046 8:+84305297 None:intergenic
TGATCATCCACTTCTGCTGC+TGG 0.410282 8:+84305363 None:intergenic
CCTGTTGAGTTGGATGCAAC+TGG 0.412568 8:+84304370 None:intergenic
TACCATGTGGGCTTCTGATC+GGG 0.414425 8:+84305167 None:intergenic
CAACATCTTGAGACATTTGA+AGG 0.433132 8:+84304403 None:intergenic
CTGTAATATGCGCGAGGACA+AGG 0.435386 8:+84304991 None:intergenic
TATCTGTAGTGTCGCGTGTA+AGG 0.437510 8:+84304538 None:intergenic
CCAGTTGCATCCAACTCAAC+AGG 0.445863 8:-84304370 MsaT046419.1:CDS
AGGCTGTCCAAGCTGGAATT+GGG 0.454087 8:+84304497 None:intergenic
TCCTAATTGCTCTTCTAGCA+TGG 0.455237 8:-84304604 MsaT046419.1:CDS
TATAACCAATCCAAATTCTC+CGG 0.471393 8:-84304426 MsaT046419.1:CDS
GTGTGCATGGTTCAGGCTCT+TGG 0.473309 8:+84305340 None:intergenic
GAAATTGACCTGTTCAGTCT+TGG 0.478191 8:+84305901 None:intergenic
GCTGCGGTGGTCGATGCCAT+TGG 0.480782 8:+84304705 None:intergenic
CTGCTACTGTGTTACTATCT+GGG 0.480934 8:-84304680 MsaT046419.1:CDS
GCTTGATCAGCGGCATTGGA+GGG 0.485891 8:+84305234 None:intergenic
GAAGTTTGGATCCGCGGTGA+TGG 0.486096 8:+84304329 None:intergenic
CAGCCTCAAAACTTTGGATC+AGG 0.489452 8:-84304480 MsaT046419.1:CDS
GGATTACTGTTATTGTTGCT+GGG 0.489961 8:+84304258 None:intergenic
TCTAGTGTCACAGTAGGAAA+TGG 0.493043 8:+84304561 None:intergenic
TGTACTAGTTCTGATGCGTC+TGG 0.496058 8:+84305291 None:intergenic
TAAGCGTGCCAAGACTGAAC+AGG 0.497408 8:-84305909 MsaT046419.1:intron
ATTTGCTTGATCAGCGGCAT+TGG 0.498345 8:+84305230 None:intergenic
GGCTCTTTCTGATTGTTCTG+AGG 0.499101 8:+84305318 None:intergenic
GGCATAGCAGCAGGTGGGAG+TGG 0.499597 8:+84304726 None:intergenic
ATCTTGAGACATTTGAAGGC+CGG 0.503538 8:+84304407 None:intergenic
TAGCAGCAGGTGGGAGTGGA+TGG 0.505934 8:+84304730 None:intergenic
GACTCACTTGTTTGCGAACG+GGG 0.507020 8:+84304947 None:intergenic
TCTCCTTCCCAATTCCAGCT+TGG 0.508244 8:-84304504 MsaT046419.1:CDS
TTTACATTTCAGATTGTCAA+AGG 0.510724 8:-84305438 MsaT046419.1:intron
CTTGATCAGCGGCATTGGAG+GGG 0.514641 8:+84305235 None:intergenic
CCAAACCACAGAACATGATC+AGG 0.515476 8:-84305551 MsaT046419.1:intron
ATACCATGTGGGCTTCTGAT+CGG 0.516534 8:+84305166 None:intergenic
ATGAATCTAATAAGCACAAA+CGG 0.517014 8:-84306571 MsaT046419.1:CDS
GGTCAATGTCAAGTGCTGAT+GGG 0.517767 8:-84304659 MsaT046419.1:CDS
GGGTCAATGTCAAGTGCTGA+TGG 0.517914 8:-84304660 MsaT046419.1:CDS
TGATTGTTCTGAGGTGTGCA+TGG 0.520062 8:+84305327 None:intergenic
GCCATGCTAGAAGAGCAATT+AGG 0.522733 8:+84304603 None:intergenic
AAAGGAAAAGCTGAGGAGAA+AGG 0.526527 8:-84305420 MsaT046419.1:CDS
GAGCAATTGCAAGAGGAGCT+TGG 0.529769 8:-84305682 MsaT046419.1:CDS
AAAGCTGAGGAGAAAGGAGA+TGG 0.531880 8:-84305414 MsaT046419.1:CDS
GCATTGGAGGGGTTTAATCT+GGG 0.534841 8:+84305246 None:intergenic
GATGCCATTGGCATAGCAGC+AGG 0.540165 8:+84304717 None:intergenic
GTTTGGATCCGCGGTGATGG+CGG 0.540992 8:+84304332 None:intergenic
GATCAATCAATGGTGGATGA+TGG 0.542601 8:-84305953 MsaT046419.1:CDS
TTAATCTGGGAAGCTGACTT+CGG 0.543926 8:+84305259 None:intergenic
TCACAATTGCAGATCAATGA+TGG 0.544968 8:-84305057 MsaT046419.1:intron
TGTGGGCTTCTGATCGGGCA+CGG 0.545553 8:+84305172 None:intergenic
TACAGATGCACAATGGCTCT+GGG 0.545795 8:-84304973 MsaT046419.1:CDS
AGTGATGATGCCTGTTGAGT+TGG 0.552709 8:+84304360 None:intergenic
CACCGGAAGTGATCAATCAA+TGG 0.556816 8:-84305963 MsaT046419.1:CDS
CTTCAAATGTCTCAAGATGT+TGG 0.558376 8:-84304402 MsaT046419.1:CDS
CAGACTCACTTGTTTGCGAA+CGG 0.559552 8:+84304945 None:intergenic
CACAGTAGCAGCAGCTGCGG+TGG 0.562058 8:+84304692 None:intergenic
GAATGGTCCAGCAGCAGAAG+TGG 0.565888 8:-84305370 MsaT046419.1:CDS
TTCTGCATTTGCTTGATCAG+CGG 0.571955 8:+84305224 None:intergenic
CCCACCTGCTGCTATGCCAA+TGG 0.574594 8:-84304721 MsaT046419.1:CDS
GAAGGCCGGAGAATTTGGAT+TGG 0.577352 8:+84304421 None:intergenic
CGCGACACTACAGATAATAA+CGG 0.582926 8:-84304531 MsaT046419.1:CDS
GCCATTGGCATAGCAGCAGG+TGG 0.589340 8:+84304720 None:intergenic
TGTAATATGCGCGAGGACAA+GGG 0.590385 8:+84304992 None:intergenic
CAACTCCTTATTACTAACAC+CGG 0.591469 8:-84305980 MsaT046419.1:CDS
CAAATGTCTCAAGATGTTGG+AGG 0.596501 8:-84304399 MsaT046419.1:CDS
AATCACCTGATCATGTTCTG+TGG 0.597094 8:+84305546 None:intergenic
GTGCTTATTAGATTCATCGT+CGG 0.598438 8:+84306577 None:intergenic
ATTATAGGTTCAACGTTGTG+CGG 0.604622 8:-84304796 MsaT046419.1:intron
CGCATATTACAGATGCACAA+TGG 0.609217 8:-84304980 MsaT046419.1:CDS
TGCAGAGAACCAAAAGCTGA+AGG 0.611336 8:-84305650 MsaT046419.1:CDS
CACCGCGGATCCAAACTTCA+CGG 0.616851 8:-84304325 MsaT046419.1:CDS
TGCCCGATCAGAAGCCCACA+TGG 0.617135 8:-84305169 MsaT046419.1:intron
CGGAAGTGATCAATCAATGG+TGG 0.617601 8:-84305960 MsaT046419.1:CDS
TGCCGTGAAGTTTGGATCCG+CGG 0.618501 8:+84304323 None:intergenic
GTCAATGTCAAGTGCTGATG+GGG 0.622615 8:-84304658 MsaT046419.1:CDS
TGTCCAAGCTGGAATTGGGA+AGG 0.625433 8:+84304501 None:intergenic
TTAGACGGAGCAATTGCAAG+AGG 0.625946 8:-84305689 MsaT046419.1:intron
GAATTCTGGCTAGTAAATTG+GGG 0.628387 8:+84304628 None:intergenic
GTGGCTAGAAAGTTGATGAA+TGG 0.628570 8:-84305387 MsaT046419.1:CDS
GTAAGGTCTAGTGTCACAGT+AGG 0.632116 8:+84304555 None:intergenic
TGAGGAGAAAGGAGATGGTG+TGG 0.634590 8:-84305409 MsaT046419.1:CDS
TTACTGTTATTGTTGCTGGG+AGG 0.638488 8:+84304261 None:intergenic
ATAGGTTCAACGTTGTGCGG+AGG 0.648017 8:-84304793 MsaT046419.1:intron
TGGTGCTGATGCTGAGAGTG+TGG 0.648731 8:+84304581 None:intergenic
CCATTGGCATAGCAGCAGGT+GGG 0.656238 8:+84304721 None:intergenic
GATTGTCAAAGGAAAAGCTG+AGG 0.658561 8:-84305427 MsaT046419.1:CDS
AGTGCTTGTGCAATCACTTG+TGG 0.658579 8:+84304450 None:intergenic
AGGAGCAGCACCAATTATGG+AGG 0.660834 8:+84304281 None:intergenic
TAACACAGTAGCAGCAGCTG+CGG 0.661912 8:+84304689 None:intergenic
TAAGCACAAACGGAGCAACA+TGG 0.662166 8:-84306561 MsaT046419.1:CDS
CTGTTGAGTTGGATGCAACT+GGG 0.664888 8:+84304371 None:intergenic
GTGCATCTGTAATATGCGCG+AGG 0.676244 8:+84304985 None:intergenic
ACTAATATAGTATACCATGT+GGG 0.681722 8:+84305155 None:intergenic
AGATCAATGATGGATGCCAA+TGG 0.705200 8:-84305047 MsaT046419.1:CDS
AATGAAGATGATCAAAATCG+CGG 0.707922 8:-84306523 MsaT046419.1:CDS
GGAGAAAGGAGATGGTGTGG+TGG 0.745088 8:-84305406 MsaT046419.1:CDS
TCAGCGCGGAGATTGCAATG+AGG 0.745989 8:+84306373 None:intergenic
ACTAAGTGCCGCCATCACCG+CGG 0.753006 8:-84304340 MsaT046419.1:CDS
GAAGATGATCAAAATCGCGG+CGG 0.753200 8:-84306520 MsaT046419.1:CDS
TTACGTTGACATGGTCAGCG+CGG 0.778275 8:+84306359 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 84304224 84306611 84304224 ID=MsaG046419
Chr8 mRNA 84304224 84306611 84304224 ID=MsaT046419.1;Parent=MsaG046419
Chr8 exon 84304224 84304811 84304224 ID=MsaT046419.1.exon6;Parent=MsaT046419.1
Chr8 CDS 84304224 84304811 84304224 ID=cds.MsaT046419.1;Parent=MsaT046419.1
Chr8 exon 84304954 84305067 84304954 ID=MsaT046419.1.exon5;Parent=MsaT046419.1
Chr8 CDS 84304954 84305067 84304954 ID=cds.MsaT046419.1;Parent=MsaT046419.1
Chr8 exon 84305170 84305448 84305170 ID=MsaT046419.1.exon4;Parent=MsaT046419.1
Chr8 CDS 84305170 84305448 84305170 ID=cds.MsaT046419.1;Parent=MsaT046419.1
Chr8 exon 84305552 84305707 84305552 ID=MsaT046419.1.exon3;Parent=MsaT046419.1
Chr8 CDS 84305552 84305707 84305552 ID=cds.MsaT046419.1;Parent=MsaT046419.1
Chr8 exon 84305910 84306011 84305910 ID=MsaT046419.1.exon2;Parent=MsaT046419.1
Chr8 CDS 84305910 84306011 84305910 ID=cds.MsaT046419.1;Parent=MsaT046419.1
Chr8 exon 84306363 84306611 84306363 ID=MsaT046419.1.exon1;Parent=MsaT046419.1
Chr8 CDS 84306363 84306611 84306363 ID=cds.MsaT046419.1;Parent=MsaT046419.1
Gene Sequence

>MsaT046419.1

ATGTTAACATTTCCGACGATGAATCTAATAAGCACAAACGGAGCAACATGGTGTGATGAGAATGAAAATGAAGATGATCAAAATCGCGGCGGCATGAATCGTGTAACTATGGATGAAGTTGATTTCTTCTCAAACGATAAATCATCATCATCGCCAGAACAACTTGATGATGTTTCAATGAAGAATAATAATAATAATATTAATGAGATTTACGATCCTCATTGCAATCTCCGCGCTGACCATGTCAACACTGGTTTACAACTCCTTATTACTAACACCGGAAGTGATCAATCAATGGTGGATGATGGAACTTCAATAAATGCTGAAGATAAGCGTGCCAAGACTGAACAGACGGAGCAATTGCAAGAGGAGCTTGGACGTGTGAATGCAGAGAACCAAAAGCTGAAGGAAATGCTGAGTGACATGAGCAGTAGCTACACAAACTTGCATAAGCGTTTTATGTCCTTAATGCAACAGCAACAGAACCAAACCACAGAACATGATCAGATTGTCAAAGGAAAAGCTGAGGAGAAAGGAGATGGTGTGGTGGCTAGAAAGTTGATGAATGGTCCAGCAGCAGAAGTGGATGATCACCAAGAGCCTGAACCATGCACACCTCAGAACAATCAGAAAGAGCCTGATCCAGACGCATCAGAACTAGTACAACTTTTGGACCGAAGTCAGCTTCCCAGATTAAACCCCTCCAATGCCGCTGATCAAGCAAATGCAGAAGCCACTATGAGAAAAGCACGAGTCTCAGTCCGTGCCCGATCAGAAGCCCACATGATCAATGATGGATGCCAATGGCGAAAATATGGACAAAAAATGGCTAAAGGAAACCCTTGTCCTCGCGCATATTACAGATGCACAATGGCTCTGGGTTGCCCCGTTCGCAAACAAGTTCAACGTTGTGCGGAGGACAGATCAATTTTGATAACAACATATGAAGGGACACATAGCCATCCACTCCCACCTGCTGCTATGCCAATGGCATCGACCACCGCAGCTGCTGCTACTGTGTTACTATCTGGGTCAATGTCAAGTGCTGATGGGGTGATGAACCCCAATTTACTAGCCAGAATTCTTCCTAATTGCTCTTCTAGCATGGCCACACTCTCAGCATCAGCACCATTTCCTACTGTGACACTAGACCTTACACGCGACACTACAGATAATAACGGAAATTCTCCTTCCCAATTCCAGCTTGGACAGCCTCAAAACTTTGGATCAGGACAATTACCACAAGTGATTGCACAAGCACTTTATAACCAATCCAAATTCTCCGGCCTTCAAATGTCTCAAGATGTTGGAGGCTCTTCCCAGTTGCATCCAACTCAACAGGCATCATCACTAAGTGCCGCCATCACCGCGGATCCAAACTTCACGGCAGCACTCGCAGCTGCTATCTCCTCCATAATTGGTGCTGCTCCTCCCAGCAACAATAACAGTAATCCCAATATCATCAACAGTGCTACCTACAATCAGTAG

Protein sequence

>MsaT046419.1

MLTFPTMNLISTNGATWCDENENEDDQNRGGMNRVTMDEVDFFSNDKSSSSPEQLDDVSMKNNNNNINEIYDPHCNLRADHVNTGLQLLITNTGSDQSMVDDGTSINAEDKRAKTEQTEQLQEELGRVNAENQKLKEMLSDMSSSYTNLHKRFMSLMQQQQNQTTEHDQIVKGKAEEKGDGVVARKLMNGPAAEVDDHQEPEPCTPQNNQKEPDPDASELVQLLDRSQLPRLNPSNAADQANAEATMRKARVSVRARSEAHMINDGCQWRKYGQKMAKGNPCPRAYYRCTMALGCPVRKQVQRCAEDRSILITTYEGTHSHPLPPAAMPMASTTAAAATVLLSGSMSSADGVMNPNLLARILPNCSSSMATLSASAPFPTVTLDLTRDTTDNNGNSPSQFQLGQPQNFGSGQLPQVIAQALYNQSKFSGLQMSQDVGGSSQLHPTQQASSLSAAITADPNFTAALAAAISSIIGAAPPSNNNSNPNIINSATYNQ*