AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046424


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046424 MtrunA17_Chr4g0075261 96.207 870 33 0 1 870 1 870 0.0 1748
MsaG046424 MtrunA17_Chr2g0289121 59.974 777 248 14 107 870 99 825 0.0 885
MsaG046424 MtrunA17_Chr1g0211711 47.410 753 315 17 157 864 332 1048 0.0 658
MsaG046424 MtrunA17_Chr1g0183311 48.257 746 327 16 168 864 144 879 0.0 632
MsaG046424 MtrunA17_Chr7g0275771 42.623 793 355 16 168 866 140 926 0.0 619
MsaG046424 MtrunA17_Chr5g0426961 45.867 750 310 16 161 864 133 832 0.0 603
MsaG046424 MtrunA17_Chr2g0289031 62.037 432 118 4 438 868 11 397 0.0 527
MsaG046424 MtrunA17_Chr1g0211661 42.939 701 307 16 154 807 211 865 1.74e-173 525
MsaG046424 MtrunA17_Chr5g0420361 44.923 650 283 17 247 848 157 779 1.14e-169 512
MsaG046424 MtrunA17_Chr1g0192011 36.813 728 405 12 166 867 265 963 1.37e-158 489
MsaG046424 MtrunA17_Chr6g0472441 41.541 662 292 19 235 848 87 701 1.70e-148 455
MsaG046424 MtrunA17_Chr1g0211691 40.881 658 297 15 152 755 326 945 2.48e-139 438
MsaG046424 MtrunA17_Chr1g0147021 44.874 517 231 11 167 651 869 1363 3.14e-126 417
MsaG046424 MtrunA17_Chr1g0147021 68.874 151 47 0 718 868 1549 1699 4.07e-61 226
MsaG046424 MtrunA17_Chr2g0281051 33.123 794 441 18 144 866 182 956 6.85e-125 400
MsaG046424 MtrunA17_Chr5g0448301 39.785 558 228 16 263 777 139 631 2.71e-104 336
MsaG046424 MtrunA17_Chr4g0048531 36.380 558 280 13 378 866 727 1278 4.64e-97 330
MsaG046424 MtrunA17_Chr4g0048531 35.081 248 138 8 166 395 258 500 5.40e-34 141
MsaG046424 MtrunA17_Chr2g0289041 67.647 204 63 2 188 388 1 204 7.80e-89 280
MsaG046424 MtrunA17_Chr8g0361381 60.541 185 68 1 434 618 29 208 1.76e-72 237
MsaG046424 MtrunA17_Chr2g0289091 61.579 190 58 5 644 829 242 420 1.83e-62 217
MsaG046424 MtrunA17_Chr2g0289091 69.065 139 43 0 507 645 20 158 1.43e-58 206
MsaG046424 MtrunA17_Chr8g0361391 55.191 183 34 4 688 870 26 160 8.53e-56 189
MsaG046424 MtrunA17_Chr1g0211701 70.536 112 33 0 753 864 4 115 3.83e-51 176
MsaG046424 MtrunA17_Chr7g0231061 49.733 187 82 2 478 660 1 179 2.18e-50 176
MsaG046424 MtrunA17_Chr2g0289101 61.475 122 44 2 296 414 8 129 6.06e-43 153
MsaG046424 MtrunA17_Chr8g0340381 66.667 90 26 2 528 617 33 118 5.36e-31 120
MsaG046424 MtrunA17_Chr8g0364421 32.273 220 121 7 279 482 10 217 3.14e-21 93.6
MsaG046424 MtrunA17_Chr8g0364411 37.097 124 74 4 155 275 21 143 1.01e-17 80.9
MsaG046424 MtrunA17_Chr1g0211671 54.237 59 27 0 806 864 15 73 1.57e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046424 AT1G62310.1 56.148 732 255 9 147 847 181 877 0.0 808
MsaG046424 AT1G11950.1 55.263 722 258 8 168 867 193 871 0.0 808
MsaG046424 AT1G11950.3 55.263 722 258 8 168 867 193 871 0.0 808
MsaG046424 AT1G11950.2 52.454 652 245 8 168 797 193 801 0.0 684
MsaG046424 AT4G00990.1 43.025 767 362 18 168 870 80 835 0.0 566
MsaG046424 AT4G00990.3 41.690 710 339 18 168 813 80 778 5.72e-162 492
MsaG046424 AT4G00990.2 42.023 702 332 18 168 805 80 770 2.47e-161 490
MsaG046424 AT3G07610.1 48.814 506 189 8 388 865 429 892 9.11e-145 454
MsaG046424 AT3G07610.1 43.316 187 100 5 168 349 155 340 2.39e-38 155
MsaG046424 AT3G07610.3 46.476 525 195 9 388 865 429 914 5.12e-137 434
MsaG046424 AT3G07610.3 43.316 187 100 5 168 349 155 340 2.56e-38 155
MsaG046424 AT1G09060.2 33.612 717 430 14 168 867 206 893 6.52e-125 399
MsaG046424 AT1G09060.1 33.612 717 430 14 168 867 206 893 6.52e-125 399
MsaG046424 AT1G09060.4 33.612 717 430 14 168 867 220 907 8.80e-125 399
MsaG046424 AT1G09060.3 33.612 717 430 14 168 867 220 907 8.80e-125 399
MsaG046424 AT4G21430.1 29.679 748 441 15 156 866 215 914 3.24e-90 306
MsaG046424 AT3G07610.2 44.565 276 118 5 372 619 419 687 5.70e-62 224
MsaG046424 AT3G07610.2 43.316 187 100 5 168 349 155 340 4.57e-38 153

Find 173 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACTCGTATGTTCTTTAA+AGG 0.110692 8:-84366068 MsaT046424.1:CDS
TTCTCTAGCTTTGTGTTTCT+TGG 0.148326 8:+84364365 None:intergenic
CTCGCAGTATGCTGAAAATT+TGG 0.155349 8:-84366809 MsaT046424.1:CDS
CCATGTTCTAAAACCTGATA+TGG 0.202757 8:-84365859 MsaT046424.1:CDS
TTTGAGGCAGCATGCTTCTT+TGG 0.209357 8:+84368213 None:intergenic
AGAACATCACGAACAATAAT+TGG 0.212049 8:+84366669 None:intergenic
ACAGTTTCACAAGAAAATTT+TGG 0.236784 8:-84368363 MsaT046424.1:CDS
TCTGGATGCGCAAAAGCTTT+TGG 0.237412 8:-84368486 MsaT046424.1:CDS
CAAAGCTCATAGGAACAATT+TGG 0.255616 8:+84367113 None:intergenic
TCATGCACTGATGACATTTC+CGG 0.257622 8:+84367934 None:intergenic
CAGAGAACATATAGAAAATA+AGG 0.299885 8:-84365115 MsaT046424.1:CDS
TGTCGCAAGGTCGACCATTT+AGG 0.315353 8:+84365139 None:intergenic
GAAGTTCCAATATGTGAATA+GGG 0.316073 8:-84367036 MsaT046424.1:CDS
TGACAAATTTGTTTCAGATA+TGG 0.324144 8:+84367433 None:intergenic
ACTTCTTCTATAGACATATC+AGG 0.326397 8:+84367716 None:intergenic
AGGGCTGATGTATGCCTAAA+TGG 0.327833 8:-84365153 MsaT046424.1:CDS
ATGTCATCAGTGCATGAAAA+AGG 0.335195 8:-84367928 MsaT046424.1:CDS
AAGTTTCTGTTTCTTCTTTG+AGG 0.339318 8:+84368197 None:intergenic
AAGAAGTTGAAGGAGGAGTT+TGG 0.343772 8:-84364725 MsaT046424.1:intron
CATGCACTGATGACATTTCC+GGG 0.344655 8:+84367935 None:intergenic
GCGTTCAAAAGGAACAATTA+AGG 0.347282 8:-84367642 MsaT046424.1:intron
TGAAGTTCCAATATGTGAAT+AGG 0.348367 8:-84367037 MsaT046424.1:CDS
AATAAATTCTTCACAATGTC+GGG 0.349503 8:+84365953 None:intergenic
AGAAGGAAAAGGAAATACTA+TGG 0.362427 8:-84368403 MsaT046424.1:CDS
CATAGCCCCTATTCACATAT+TGG 0.366484 8:+84367030 None:intergenic
TCTCTAGCTTTGTGTTTCTT+GGG 0.369110 8:+84364366 None:intergenic
GGTATTAGAGTGCAACAATA+TGG 0.378136 8:-84365091 MsaT046424.1:CDS
GAAAACACTCGAAAGAATTC+AGG 0.382065 8:-84364909 MsaT046424.1:CDS
CATTATAATACCTGCTCAAC+CGG 0.384038 8:+84364871 None:intergenic
AACAATTCAGTAAAGCTTCT+AGG 0.385507 8:+84364132 None:intergenic
GAAAATGAAACAATGGTAAC+AGG 0.395384 8:-84364991 MsaT046424.1:CDS
GTGCCCTGTGGGATATATTT+CGG 0.395741 8:-84364966 MsaT046424.1:CDS
TCTCTTCTTAGATGCTAGAT+TGG 0.395903 8:+84368242 None:intergenic
TTAATAATACCTCCGCTGTA+TGG 0.402466 8:+84365256 None:intergenic
GAGGATATGTTGAAGTTCTC+TGG 0.404767 8:-84368504 MsaT046424.1:CDS
TCTGTGTGCTTCTTTCAAAT+TGG 0.411095 8:+84365209 None:intergenic
AAAAGGGCATAAAGATGTTC+TGG 0.411429 8:-84368283 MsaT046424.1:CDS
TTGTCACTACAGAGACTTTG+TGG 0.411737 8:+84367271 None:intergenic
TCGCAGTATGCTGAAAATTT+GGG 0.419890 8:-84366808 MsaT046424.1:CDS
CGGAGGTATTATTAACTGAT+AGG 0.429669 8:-84365248 MsaT046424.1:CDS
TAGTTGTGTCCCAAAAGAAA+TGG 0.431073 8:-84366907 MsaT046424.1:CDS
CTCTTCTTAGATGCTAGATT+GGG 0.431195 8:+84368243 None:intergenic
CATACCGATACAAATTCAAA+AGG 0.431375 8:-84368300 MsaT046424.1:CDS
AGAGAGGACACTGAAAAGTT+AGG 0.433154 8:-84364943 MsaT046424.1:CDS
ACATTTGAGGCAAAGCTCAT+AGG 0.433228 8:+84367103 None:intergenic
CCAGCCCGAGGATCAGTATA+CGG 0.441774 8:+84365912 None:intergenic
AGGCATACATCAGCCCTCTC+TGG 0.443538 8:+84365159 None:intergenic
GTATTTCTTTGCAACATTTG+AGG 0.457251 8:+84367090 None:intergenic
AAAGCTCATAGGAACAATTT+GGG 0.457327 8:+84367114 None:intergenic
TTGGAACTTCATCTCAGCTC+GGG 0.458986 8:+84367049 None:intergenic
AATGTTTGCCTGCGTTCAAA+AGG 0.459522 8:-84367653 MsaT046424.1:CDS
TTCCGAAAACATTGGACAAA+TGG 0.462884 8:-84366696 MsaT046424.1:CDS
AGTTGTGTCCCAAAAGAAAT+GGG 0.463161 8:-84366906 MsaT046424.1:CDS
AACATGGGACAGGTCTGAGC+TGG 0.463529 8:-84366644 MsaT046424.1:CDS
GTCTTTGACAGCTTGATCAA+TGG 0.468451 8:+84364154 None:intergenic
CTGGATGCCCACATCAAGTC+AGG 0.469410 8:-84364571 MsaT046424.1:CDS
GGATCAGTATACGGTTGAAA+TGG 0.473452 8:+84365921 None:intergenic
GATCTTCAAATTTATCAGAA+GGG 0.473985 8:+84365982 None:intergenic
ACAAAGAGCAGGAGCAGAGC+TGG 0.474771 8:-84368114 MsaT046424.1:CDS
AAATACTATGGGATGTTTGA+AGG 0.476643 8:-84368391 MsaT046424.1:CDS
GTTCTTTAAAGGTTATATAG+AGG 0.476754 8:-84366057 MsaT046424.1:CDS
GTGTGGTGGTAATGAGAAAT+CGG 0.481094 8:-84368430 MsaT046424.1:CDS
TGATTTGACTGTTCTTGTCT+AGG 0.483352 8:+84368534 None:intergenic
GGGTTGTGGTAGTTCTCTGT+TGG 0.483953 8:-84366883 MsaT046424.1:CDS
GAGGCAGTATTTATTCCTGC+TGG 0.484620 8:-84364590 MsaT046424.1:CDS
GTGACAAGGAACGTGTCTAT+TGG 0.486752 8:-84367255 MsaT046424.1:intron
TCGGGCTGGAACTCTCAATC+TGG 0.493514 8:-84365898 MsaT046424.1:CDS
GGATTAAAGAAGAACTTGGC+AGG 0.496045 8:-84365812 MsaT046424.1:CDS
TTCTTTAAAGGTTATATAGA+GGG 0.499890 8:-84366056 MsaT046424.1:CDS
TTATTGTTCACCGGTTGAGC+AGG 0.500773 8:-84364881 MsaT046424.1:intron
AAATCGGAACCAGAAGGAAA+AGG 0.500939 8:-84368414 MsaT046424.1:CDS
CTGAGGCGCATTCTCCCACA+TGG 0.504365 8:-84366858 MsaT046424.1:CDS
ACATCAAGTCAGGAATCTTA+AGG 0.504379 8:-84364561 MsaT046424.1:intron
CAGGCATACTTATTGTTCAC+CGG 0.508030 8:-84364890 MsaT046424.1:CDS
GAAGAACATATAGTAATCTC+TGG 0.510135 8:-84366034 MsaT046424.1:CDS
AAATTGAACAAACTACTCTT+CGG 0.511155 8:-84366785 MsaT046424.1:CDS
ACATGGGTGGATGTCTGCCT+TGG 0.513331 8:-84366841 MsaT046424.1:CDS
GGAGCACAAGAAGAAGTTGA+AGG 0.513811 8:-84364735 MsaT046424.1:CDS
AGGTCTGAGCTGGGAGCCGA+TGG 0.514364 8:-84366634 MsaT046424.1:CDS
TAATAATACCTCCGCTGTAT+GGG 0.515560 8:+84365257 None:intergenic
AGATCTTCAAATTTATCAGA+AGG 0.521629 8:+84365981 None:intergenic
ACTTGATGTGGGCATCCAGC+AGG 0.524603 8:+84364575 None:intergenic
GTTCGTGATGTTCTAAAACA+TGG 0.525158 8:-84366660 MsaT046424.1:CDS
CTCTCCGAAATATATCCCAC+AGG 0.525312 8:+84364962 None:intergenic
TTCAACCGTATACTGATCCT+CGG 0.526738 8:-84365917 MsaT046424.1:CDS
GAGTGTAATGCCAGGAGTGA+TGG 0.530231 8:-84366936 MsaT046424.1:CDS
TTCGTGATGTTCTAAAACAT+GGG 0.530753 8:-84366659 MsaT046424.1:CDS
ATCTTCAAATTTATCAGAAG+GGG 0.535676 8:+84365983 None:intergenic
CTACTTTCAGACATCTAACA+TGG 0.537773 8:-84367512 MsaT046424.1:intron
TGTGTTTCTTGGGAAGCTGA+CGG 0.538542 8:+84364376 None:intergenic
ATCTTTCACAATGTGTCTGA+GGG 0.539751 8:-84365039 MsaT046424.1:CDS
TTCTTCTTAAGACAAAGAGC+AGG 0.540103 8:-84368125 MsaT046424.1:CDS
GAAGAAGATGTATCGAGCTA+TGG 0.550506 8:-84366759 MsaT046424.1:CDS
TATGGGATTAAAGAAGAACT+TGG 0.552658 8:-84365816 MsaT046424.1:CDS
TTAAGATTCCTGACTTGATG+TGG 0.553851 8:+84364563 None:intergenic
AAATCACAAGACACTGGTAG+AGG 0.557418 8:+84366987 None:intergenic
ATATGTTCTCTGTTGTCGCA+AGG 0.559696 8:+84365126 None:intergenic
CTCCACTGATTTCGATAGGA+CGG 0.560809 8:+84365064 None:intergenic
GAATAAATTCTTCACAATGT+CGG 0.560919 8:+84365952 None:intergenic
CCGTATACTGATCCTCGGGC+TGG 0.561803 8:-84365912 MsaT046424.1:CDS
CTAGCATCTAAGAAGAGAGA+TGG 0.561973 8:-84368237 MsaT046424.1:CDS
ATTGGAACTTCATCTCAGCT+CGG 0.562205 8:+84367048 None:intergenic
GAAGGAAAAGGAAATACTAT+GGG 0.562668 8:-84368402 MsaT046424.1:CDS
TGTTGCTCTTCCGAAAACAT+TGG 0.563196 8:-84366704 MsaT046424.1:CDS
GTATGCGATGCATCAATCAA+TGG 0.564613 8:-84367860 MsaT046424.1:intron
AATTTGGGCAGATTCGATGA+AGG 0.564967 8:+84367129 None:intergenic
AGATGCTGAAGCTAAAAGAC+TGG 0.565379 8:-84366007 MsaT046424.1:CDS
TCAACCGTATACTGATCCTC+GGG 0.565860 8:-84365916 MsaT046424.1:CDS
ACTAACACTTCCATCACTCC+TGG 0.566645 8:+84366926 None:intergenic
CGATTGCATGGCTAATTGTG+AGG 0.570429 8:-84366541 MsaT046424.1:intron
ACTGCGAGCTTTGTCTTCCA+AGG 0.570985 8:+84366824 None:intergenic
AGTGAAGGCCATCGATTGCA+TGG 0.575237 8:-84366553 MsaT046424.1:CDS
AAATTTGTTTCAGATATGGA+AGG 0.578176 8:+84367437 None:intergenic
CATGTTCTAAAACCTGATAT+GGG 0.578332 8:-84365858 MsaT046424.1:CDS
ACAATTAGCCATGCAATCGA+TGG 0.580189 8:+84366545 None:intergenic
ATACCGATACAAATTCAAAA+GGG 0.582996 8:-84368299 MsaT046424.1:CDS
AGGGGCTATGATTATATGCA+TGG 0.585379 8:-84367017 MsaT046424.1:CDS
GTAGTTCTCTGTTGGAGCTG+AGG 0.590028 8:-84366875 MsaT046424.1:CDS
TTCTACAGAAAATGAAACAA+TGG 0.590271 8:-84364998 MsaT046424.1:CDS
TATCTTTCACAATGTGTCTG+AGG 0.590309 8:-84365040 MsaT046424.1:CDS
GATGTTCTAAAACATGGGAC+AGG 0.591339 8:-84366654 MsaT046424.1:CDS
GGCGCATTCTCCCACATGGG+TGG 0.591623 8:-84366854 MsaT046424.1:CDS
TATCTACCGAGTGTAATGCC+AGG 0.591693 8:-84366944 MsaT046424.1:CDS
ACATGGGACAGGTCTGAGCT+GGG 0.594876 8:-84366643 MsaT046424.1:CDS
ATATCTCCACTGATTTCGAT+AGG 0.597449 8:+84365060 None:intergenic
GAGAACACCGTGCTCCAGAG+AGG 0.597552 8:-84365173 MsaT046424.1:CDS
AGAGAACTTCAACATATCCT+CGG 0.600419 8:+84368506 None:intergenic
AATGCTCGCCACATGACCAT+CGG 0.603094 8:+84366618 None:intergenic
TAAGATTCCTGACTTGATGT+GGG 0.603534 8:+84364564 None:intergenic
AGAACACCGTGCTCCAGAGA+GGG 0.606805 8:-84365172 MsaT046424.1:CDS
TGTTGCAAAGAAATACGTGA+TGG 0.607475 8:-84367083 MsaT046424.1:CDS
CTTCTTCTATAGACATATCA+GGG 0.611493 8:+84367717 None:intergenic
TACTATGGGATGTTTGAAGG+AGG 0.613119 8:-84368388 MsaT046424.1:CDS
ATCACTCCTGGCATTACACT+CGG 0.613940 8:+84366938 None:intergenic
GATTAAAGAAGAACTTGGCA+GGG 0.616962 8:-84365811 MsaT046424.1:CDS
GGTAACAGGTAGTGCCCTGT+GGG 0.617284 8:-84364977 MsaT046424.1:CDS
TTGTGTCCCAAAAGAAATGG+GGG 0.617770 8:-84366904 MsaT046424.1:CDS
GTCTCTAAATCACAAGACAC+TGG 0.619904 8:+84366981 None:intergenic
GCTGAAGAATTTCACGAGTG+TGG 0.620552 8:-84368447 MsaT046424.1:CDS
TTGTCATGAACAAAGTGTAG+AGG 0.621423 8:-84367416 MsaT046424.1:CDS
GCGAGCATTGTGTGATAATG+TGG 0.622160 8:-84366604 MsaT046424.1:CDS
CATCAGCCCTCTCTGGAGCA+CGG 0.622167 8:+84365166 None:intergenic
AATGAGAAATCGGAACCAGA+AGG 0.622864 8:-84368420 MsaT046424.1:CDS
GTGGGATATATTTCGGAGAG+AGG 0.626190 8:-84364959 MsaT046424.1:CDS
AAGTTCCAATATGTGAATAG+GGG 0.632079 8:-84367035 MsaT046424.1:CDS
ATTAAAGAAGAACTTGGCAG+GGG 0.632276 8:-84365810 MsaT046424.1:CDS
ACAGTCAAATCAACATTCCG+AGG 0.632981 8:-84368523 MsaT046424.1:CDS
TGGTAGAATCGATAACATAA+CGG 0.633314 8:-84368094 MsaT046424.1:intron
CTTTCACAATGTGTCTGAGG+GGG 0.633363 8:-84365037 MsaT046424.1:CDS
TGAGGCGCATTCTCCCACAT+GGG 0.633374 8:-84366857 MsaT046424.1:CDS
TCTTCAAATTTATCAGAAGG+GGG 0.635024 8:+84365984 None:intergenic
AACCGTCCTATCGAAATCAG+TGG 0.635864 8:-84365066 MsaT046424.1:CDS
TGGTAACAGGTAGTGCCCTG+TGG 0.639563 8:-84364978 MsaT046424.1:CDS
AATCACAAGACACTGGTAGA+GGG 0.646755 8:+84366988 None:intergenic
AGGGTGTTCAACAAAATACC+CGG 0.650067 8:-84367953 MsaT046424.1:CDS
GCACAAGAAGAAGTTGAAGG+AGG 0.651643 8:-84364732 MsaT046424.1:CDS
GAAGAATTTCACGAGTGTGG+TGG 0.651936 8:-84368444 MsaT046424.1:CDS
AGATTGAGAGTTCCAGCCCG+AGG 0.651977 8:+84365900 None:intergenic
GTTGTGTCCCAAAAGAAATG+GGG 0.654890 8:-84366905 MsaT046424.1:CDS
AGGCAGACATCCACCCATGT+GGG 0.655161 8:+84366844 None:intergenic
AAGGCAGACATCCACCCATG+TGG 0.656813 8:+84366843 None:intergenic
AACCTTGCAGTCGTGCACAA+AGG 0.657614 8:-84364460 MsaT046424.1:intron
GCTGGGAGCCGATGGTCATG+TGG 0.662730 8:-84366626 MsaT046424.1:CDS
TGGAACTTCATCTCAGCTCG+GGG 0.672240 8:+84367050 None:intergenic
ACAAAGTCTCTGTAGTGACA+AGG 0.677477 8:-84367269 MsaT046424.1:CDS
ATAAATTCTTCACAATGTCG+GGG 0.685345 8:+84365954 None:intergenic
AGAACATATAGAAAATAAGG+AGG 0.686564 8:-84365112 MsaT046424.1:CDS
TCACTGTGATATGTCAGATG+CGG 0.691771 8:-84365769 MsaT046424.1:intron
TCTTTCACAATGTGTCTGAG+GGG 0.694238 8:-84365038 MsaT046424.1:CDS
AGCTAGAGAAGATAAACTTG+AGG 0.698411 8:-84364352 MsaT046424.1:intron
TCTCCGAAATATATCCCACA+GGG 0.704301 8:+84364963 None:intergenic
TGTGTCCCAAAAGAAATGGG+GGG 0.738710 8:-84366903 MsaT046424.1:CDS
GGCTATGATTATATGCATGG+TGG 0.762734 8:-84367014 MsaT046424.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 84364127 84368571 84364127 ID=MsaG046424
Chr8 mRNA 84364127 84368571 84364127 ID=MsaT046424.1;Parent=MsaG046424
Chr8 exon 84364127 84364198 84364127 ID=MsaT046424.1.exon12;Parent=MsaT046424.1
Chr8 CDS 84364127 84364198 84364127 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84364353 84364472 84364353 ID=MsaT046424.1.exon11;Parent=MsaT046424.1
Chr8 CDS 84364353 84364472 84364353 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84364562 84364647 84364562 ID=MsaT046424.1.exon10;Parent=MsaT046424.1
Chr8 CDS 84364562 84364647 84364562 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84364726 84364798 84364726 ID=MsaT046424.1.exon9;Parent=MsaT046424.1
Chr8 CDS 84364726 84364798 84364726 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84364882 84365292 84364882 ID=MsaT046424.1.exon8;Parent=MsaT046424.1
Chr8 CDS 84364882 84365292 84364882 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84365770 84366099 84365770 ID=MsaT046424.1.exon7;Parent=MsaT046424.1
Chr8 CDS 84365770 84366099 84365770 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84366542 84367178 84366542 ID=MsaT046424.1.exon6;Parent=MsaT046424.1
Chr8 CDS 84366542 84367178 84366542 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84367256 84367316 84367256 ID=MsaT046424.1.exon5;Parent=MsaT046424.1
Chr8 CDS 84367256 84367316 84367256 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84367392 84367524 84367392 ID=MsaT046424.1.exon4;Parent=MsaT046424.1
Chr8 CDS 84367392 84367524 84367392 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84367643 84367742 84367643 ID=MsaT046424.1.exon3;Parent=MsaT046424.1
Chr8 CDS 84367643 84367742 84367643 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84367861 84367973 84367861 ID=MsaT046424.1.exon2;Parent=MsaT046424.1
Chr8 CDS 84367861 84367973 84367861 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Chr8 exon 84368095 84368571 84368095 ID=MsaT046424.1.exon1;Parent=MsaT046424.1
Chr8 CDS 84368095 84368571 84368095 ID=cds.MsaT046424.1;Parent=MsaT046424.1
Gene Sequence

>MsaT046424.1

ATGGAGGTAGTAGTTCCTAGACAAGAACAGTCAAATCAACATTCCGAGGATATGTTGAAGTTCTCTGGATGCGCAAAAGCTTTTGGAAATTCAAAGAGAAAGGCTGAAGAATTTCACGAGTGTGGTGGTAATGAGAAATCGGAACCAGAAGGAAAAGGAAATACTATGGGATGTTTGAAGGAGGATACAGTTTCACAAGAAAATTTTGGAATTTCACATAAGAGAAGATTTCAAGAATATCATACACATCATACCGATACAAATTCAAAAGGGCATAAAGATGTTCTGGAATGTTTAAAAGAGACGCCCAATCTAGCATCTAAGAAGAGAGATGGACCAAAGAAGCATGCTGCCTCAAAGAAGAAACAGAAACTTGAAGATGAACTCTTGCTTGACGAACTTGAACAAGATGAAGAAATGTTTTTTCTTCTTAAGACAAAGAGCAGGAGCAGAGCTGGTAGAATCGATAACATAACGGGTGTTCAACAAAATACCCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCTTTTGTGCCTTGCACTAAATGTTCAAAAATGTACTGTATGCGATGCATCAATCAATGGTACCCTGATATGTCTATAGAAGAAGTTGCTGAAAGTTGCCCATTTTGCATTAAAAATTGCAATTGCAATGTTTGCCTGCGTTCAAAAGGAACAATTAAGACATCTAACATGGACATCACCAATTATGAAAAAGCTCAGTATCTGCATTACATGATCAACTTACTCCTTCCATATCTGAAACAAATTTGTCATGAACAAAGTGTAGAGGAAGATATAGAAGCAAAAATACAAGGAAAATCTTCTGAGATTGAGATACCACAAAGTCTCTGTAGTGACAAGGAACGTGTCTATTGTGATCATTGTGCTACTTCAATCGTTGACCTTCATCGAATCTGCCCAAATTGTTCCTATGAGCTTTGCCTCAAATGTTGCAAAGAAATACGTGATGGAAGCATTACACCCCGAGCTGAGATGAAGTTCCAATATGTGAATAGGGGCTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATTTAGAGACTTCAAATTGTCATATATCTACCGAGTGTAATGCCAGGAGTGATGGAAGTGTTAGTTGTGTCCCAAAAGAAATGGGGGGTTGTGGTAGTTCTCTGTTGGAGCTGAGGCGCATTCTCCCACATGGGTGGATGTCTGCCTTGGAAGACAAAGCTCGCAGTATGCTGAAAATTTGGGAAATTGAACAAACTACTCTTCGGCATGAAGAAGATGTATCGAGCTATGGTTCAGAATCAAAAAGCAGTTTAAAAGAAGGGATGTTGCTCTTCCGAAAACATTGGACAAATGGTGAACCAATTATTGTTCGTGATGTTCTAAAACATGGGACAGGTCTGAGCTGGGAGCCGATGGTCATGTGGCGAGCATTGTGTGATAATGTGGCTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAGGCCATCGATTGCATGGCTAATTGTGAGGTTGCAATTAATACTCGTATGTTCTTTAAAGGTTATATAGAGGGAAGAACATATAGTAATCTCTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCCCCTTCTGATAAATTTGAAGATCTTTTGCCCCGACATTGTGAAGAATTTATTCGTTTCTTGCCATTTCAACCGTATACTGATCCTCGGGCTGGAACTCTCAATCTGGCTGTAAAGTTGCCAGCCCATGTTCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAAAGAAGAACTTGGCAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACAGCGGAGGTATTATTAACTGATAGGCAGAAGTCTACTATTTCCAATTTGAAAGAAGCACACAGAGCACAAGATGAGAGAGAACACCGTGCTCCAGAGAGGGCTGATGTATGCCTAAATGGTCGACCTTGCGACAACAGAGAACATATAGAAAATAAGGAGGTATTAGAGTGCAACAATATGGATAACCGTCCTATCGAAATCAGTGGAGATATCTTTCACAATGTGTCTGAGGGGGAAACTTTTCCTACCATTTCTACAGAAAATGAAACAATGGTAACAGGTAGTGCCCTGTGGGATATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTAGAAAACACTCGAAAGAATTCAGGCATACTTATTGTTCACCGGTTGAGCAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTTAAGTCGTGCACAAAGGTTGCTGTAGACTTTGTGTCCCCAGAAAATGTACATGAGTGTCTTCGTTTAACTGAAGAATTCCGTCAGCTTCCCAAGAAACACAAAGCTAGAGAAGATAAACTTGAGATACAGAAGATGATAGTTTATGCCATTGATCAAGCTGTCAAAGACCTAGAAGCTTTACTGAATTGTTCCTGA

Protein sequence

>MsaT046424.1

MEVVVPRQEQSNQHSEDMLKFSGCAKAFGNSKRKAEEFHECGGNEKSEPEGKGNTMGCLKEDTVSQENFGISHKRRFQEYHTHHTDTNSKGHKDVLECLKETPNLASKKRDGPKKHAASKKKQKLEDELLLDELEQDEEMFFLLKTKSRSRAGRIDNITGVQQNTRKCHQCMKKERTSFVPCTKCSKMYCMRCINQWYPDMSIEEVAESCPFCIKNCNCNVCLRSKGTIKTSNMDITNYEKAQYLHYMINLLLPYLKQICHEQSVEEDIEAKIQGKSSEIEIPQSLCSDKERVYCDHCATSIVDLHRICPNCSYELCLKCCKEIRDGSITPRAEMKFQYVNRGYDYMHGGDPLPVSCDLETSNCHISTECNARSDGSVSCVPKEMGGCGSSLLELRRILPHGWMSALEDKARSMLKIWEIEQTTLRHEEDVSSYGSESKSSLKEGMLLFRKHWTNGEPIIVRDVLKHGTGLSWEPMVMWRALCDNVASDISSKMSEVKAIDCMANCEVAINTRMFFKGYIEGRTYSNLWPEMLKLKDWPPSDKFEDLLPRHCEEFIRFLPFQPYTDPRAGTLNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVLLTDRQKSTISNLKEAHRAQDEREHRAPERADVCLNGRPCDNREHIENKEVLECNNMDNRPIEISGDIFHNVSEGETFPTISTENETMVTGSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHECLRLTEEFRQLPKKHKAREDKLEIQKMIVYAIDQAVKDLEALLNCS*