AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046427


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046427 MtrunA17_Chr4g0075321 94.429 1059 57 2 1 1058 7 1064 0.0 2015
MsaG046427 MtrunA17_Chr5g0403241 69.706 340 99 2 721 1058 1170 1507 6.31e-149 482
MsaG046427 MtrunA17_Chr5g0403241 42.732 571 249 9 28 529 103 664 1.44e-130 432
MsaG046427 MtrunA17_Chr5g0403241 60.630 127 50 0 547 673 817 943 1.12e-41 167
MsaG046427 MtrunA17_Chr8g0373821 67.712 319 93 5 737 1053 223 533 1.53e-137 425
MsaG046427 MtrunA17_Chr8g0373821 44.400 250 104 3 321 557 13 240 1.32e-48 182
MsaG046427 MtrunA17_Chr8g0373841 60.067 298 96 5 393 674 64 354 4.15e-110 351
MsaG046427 MtrunA17_Chr8g0373891 60.606 264 88 2 1 249 1 263 1.03e-104 328
MsaG046427 MtrunA17_Chr4g0075341 47.215 377 71 7 291 652 104 367 7.30e-89 290
MsaG046427 MtrunA17_Chr4g0003501 38.532 218 107 6 862 1058 744 955 6.00e-37 150
MsaG046427 MtrunA17_Chr4g0003511 38.636 220 106 6 862 1058 839 1052 6.00e-37 151
MsaG046427 MtrunA17_Chr5g0399801 38.182 220 107 6 862 1058 876 1089 5.97e-36 148
MsaG046427 MtrunA17_Chr7g0255181 29.874 318 166 10 754 1055 426 702 1.18e-28 123
MsaG046427 MtrunA17_Chr1g0170651 32.081 346 163 16 728 1058 258 546 7.02e-28 120
MsaG046427 MtrunA17_Chr7g0232811 35.294 221 98 8 879 1058 323 539 1.61e-27 118
MsaG046427 MtrunA17_Chr3g0080761 30.240 334 169 11 751 1055 363 661 8.54e-27 117
MsaG046427 MtrunA17_Chr1g0190311 38.830 188 103 6 878 1056 458 642 1.32e-26 116
MsaG046427 MtrunA17_Chr8g0354821 28.746 327 180 9 751 1055 390 685 1.48e-26 116
MsaG046427 MtrunA17_Chr7g0232981 32.558 215 116 4 872 1058 303 516 1.19e-25 112
MsaG046427 MtrunA17_Chr6g0476121 34.188 234 115 8 857 1058 417 643 3.89e-25 112
MsaG046427 MtrunA17_Chr6g0477001 35.165 182 102 3 876 1057 85 250 5.10e-25 107
MsaG046427 MtrunA17_Chr1g0183321 37.634 186 103 6 878 1054 561 742 9.00e-25 111
MsaG046427 MtrunA17_Chr7g0252211 29.819 332 163 12 760 1058 463 757 1.04e-24 111
MsaG046427 MtrunA17_Chr7g0232841 34.862 218 104 7 879 1058 311 528 1.57e-24 109
MsaG046427 MtrunA17_Chr2g0305371 36.364 176 94 4 882 1057 314 471 1.83e-24 108
MsaG046427 MtrunA17_Chr6g0476111 33.624 229 113 8 862 1058 473 694 4.39e-24 108
MsaG046427 MtrunA17_Chr3g0125251 35.673 171 94 3 886 1055 1307 1462 2.59e-23 107
MsaG046427 MtrunA17_Chr1g0201311 35.294 170 91 3 886 1053 67 219 3.06e-23 104
MsaG046427 MtrunA17_Chr7g0262001 37.158 183 108 4 878 1054 517 698 4.18e-23 105
MsaG046427 MtrunA17_Chr1g0201621 34.706 170 92 3 886 1053 67 219 1.27e-22 102
MsaG046427 MtrunA17_Chr6g0460921 34.444 180 113 4 881 1057 242 419 9.66e-18 87.0
MsaG046427 MtrunA17_Chr1g0149611 35.000 160 80 5 905 1057 365 507 1.07e-17 87.8
MsaG046427 MtrunA17_Chr8g0369301 28.042 189 114 3 862 1034 553 735 1.69e-17 87.8
MsaG046427 MtrunA17_Chr8g0368901 29.101 189 112 3 862 1034 573 755 2.21e-17 87.8
MsaG046427 MtrunA17_Chr1g0163051 29.348 184 116 3 863 1034 463 644 2.33e-17 87.4
MsaG046427 MtrunA17_Chr6g0467381 28.723 188 117 4 864 1037 381 565 3.02e-17 86.7
MsaG046427 MtrunA17_Chr6g0467421 28.723 188 117 4 864 1037 381 565 3.16e-17 86.7
MsaG046427 MtrunA17_Chr2g0297191 35.065 154 84 4 904 1057 1033 1170 7.87e-17 86.3
MsaG046427 MtrunA17_Chr8g0368911 28.191 188 115 4 862 1034 566 748 8.33e-17 85.9
MsaG046427 MtrunA17_Chr6g0467531 28.723 188 117 4 864 1037 381 565 1.04e-16 85.1
MsaG046427 MtrunA17_Chr3g0094881 28.261 184 119 3 863 1034 439 621 1.54e-16 84.7
MsaG046427 MtrunA17_Chr6g0467411 28.191 188 118 4 864 1037 299 483 3.44e-16 82.8
MsaG046427 MtrunA17_Chr6g0467401 28.191 188 118 4 864 1037 381 565 4.60e-16 82.8
MsaG046427 MtrunA17_Chr1g0149581 33.540 161 81 5 905 1057 1523 1665 6.43e-16 83.6
MsaG046427 MtrunA17_Chr7g0232751 43.956 91 44 2 975 1058 29 119 7.14e-16 75.1
MsaG046427 MtrunA17_Chr1g0163041 29.730 185 114 3 863 1034 382 563 9.98e-16 82.0
MsaG046427 MtrunA17_Chr2g0306961 28.191 188 118 4 864 1037 280 464 2.79e-15 79.7
MsaG046427 MtrunA17_Chr7g0232871 43.750 64 33 1 885 945 2 65 5.93e-12 63.5
MsaG046427 MtrunA17_Chr5g0401921 27.612 134 80 3 904 1037 715 831 8.47e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046427 AT2G23740.4 38.077 520 279 8 1 483 8 521 1.07e-103 355
MsaG046427 AT2G23740.4 54.647 269 114 3 725 993 1054 1314 1.05e-81 291
MsaG046427 AT2G23740.4 42.105 95 55 0 581 675 729 823 1.78e-18 92.0
MsaG046427 AT2G23740.5 38.077 520 279 8 1 483 8 521 1.07e-103 355
MsaG046427 AT2G23740.5 54.647 269 114 3 725 993 1054 1314 1.05e-81 291
MsaG046427 AT2G23740.5 42.105 95 55 0 581 675 729 823 1.78e-18 92.0
MsaG046427 AT2G23740.3 38.077 520 279 8 1 483 8 521 3.04e-103 354
MsaG046427 AT2G23740.3 54.167 336 143 4 725 1057 1054 1381 1.08e-102 352
MsaG046427 AT2G23740.3 42.105 95 55 0 581 675 729 823 1.84e-18 92.0
MsaG046427 AT2G23740.6 38.077 520 279 8 1 483 8 521 3.04e-103 354
MsaG046427 AT2G23740.6 54.167 336 143 4 725 1057 1054 1381 1.08e-102 352
MsaG046427 AT2G23740.6 42.105 95 55 0 581 675 729 823 1.84e-18 92.0
MsaG046427 AT2G23740.2 38.077 520 279 8 1 483 8 521 3.04e-103 354
MsaG046427 AT2G23740.2 54.167 336 143 4 725 1057 1054 1381 1.08e-102 352
MsaG046427 AT2G23740.2 42.105 95 55 0 581 675 729 823 1.84e-18 92.0
MsaG046427 AT2G23740.1 54.167 336 143 4 725 1057 1047 1374 7.61e-103 353
MsaG046427 AT2G23740.1 37.692 520 274 9 1 483 8 514 1.64e-100 346
MsaG046427 AT2G23740.1 42.105 95 55 0 581 675 722 816 1.75e-18 92.0
MsaG046427 AT2G35160.5 37.745 204 103 5 862 1058 572 758 4.05e-32 135
MsaG046427 AT2G35160.2 37.745 204 103 5 862 1058 608 794 4.96e-32 135
MsaG046427 AT2G35160.3 37.745 204 103 5 862 1058 608 794 4.96e-32 135
MsaG046427 AT2G35160.1 37.745 204 103 5 862 1058 608 794 4.96e-32 135
MsaG046427 AT2G35160.4 37.745 204 103 5 862 1058 608 794 4.96e-32 135
MsaG046427 AT2G22740.2 34.842 221 114 6 862 1058 576 790 1.23e-31 134
MsaG046427 AT2G22740.1 34.842 221 114 6 862 1058 576 790 1.23e-31 134
MsaG046427 AT1G73100.1 29.483 329 173 11 753 1057 375 668 1.18e-28 123
MsaG046427 AT5G13960.2 30.814 344 175 12 745 1058 180 490 7.83e-28 119
MsaG046427 AT5G13960.1 30.814 344 175 12 745 1058 314 624 1.17e-27 120
MsaG046427 AT1G17770.1 35.047 214 118 5 863 1057 481 692 4.93e-27 118
MsaG046427 AT3G04380.2 36.559 186 109 5 878 1056 250 433 6.65e-27 116
MsaG046427 AT3G04380.6 36.559 186 109 5 878 1056 250 433 6.72e-27 115
MsaG046427 AT3G04380.5 36.559 186 109 5 878 1056 234 417 7.61e-27 115
MsaG046427 AT3G04380.3 36.559 186 109 5 878 1056 261 444 1.15e-26 115
MsaG046427 AT3G04380.4 36.559 186 109 5 878 1056 277 460 1.22e-26 115
MsaG046427 AT3G04380.1 36.559 186 109 5 878 1056 277 460 1.23e-26 115
MsaG046427 AT1G04050.3 37.500 184 105 6 879 1056 438 617 2.43e-25 113
MsaG046427 AT1G04050.2 37.500 184 105 6 879 1056 542 721 3.31e-25 113
MsaG046427 AT1G04050.1 37.500 184 105 6 879 1056 542 721 3.31e-25 113
MsaG046427 AT5G04940.2 30.218 321 171 13 755 1055 380 667 6.64e-25 112
MsaG046427 AT5G04940.1 30.218 321 171 13 755 1055 380 667 6.64e-25 112
MsaG046427 AT3G03750.2 36.318 201 109 5 874 1057 151 349 8.06e-25 107
MsaG046427 AT1G77300.1 35.673 171 94 3 886 1055 1009 1164 5.76e-24 110
MsaG046427 AT1G77300.2 35.673 171 94 3 886 1055 1009 1164 7.51e-24 109
MsaG046427 AT4G30860.1 35.227 176 96 4 882 1057 307 464 3.66e-23 105
MsaG046427 AT5G43990.9 28.339 307 163 13 799 1056 429 727 3.09e-21 100
MsaG046427 AT5G43990.2 28.339 307 163 13 799 1056 429 727 3.09e-21 100
MsaG046427 AT5G43990.3 28.339 307 163 13 799 1056 406 704 3.13e-21 100
MsaG046427 AT5G43990.11 28.339 307 163 13 799 1056 406 704 3.13e-21 100
MsaG046427 AT5G43990.1 28.339 307 163 13 799 1056 406 704 3.13e-21 100
MsaG046427 AT5G43990.4 28.339 307 163 13 799 1056 406 704 3.13e-21 100
MsaG046427 AT5G43990.8 35.821 201 106 8 871 1056 443 635 3.34e-21 100
MsaG046427 AT5G43990.12 35.821 201 106 8 871 1056 443 635 3.34e-21 100
MsaG046427 AT5G43990.6 35.821 201 106 8 871 1056 443 635 3.34e-21 100
MsaG046427 AT5G43990.13 35.821 201 106 8 871 1056 443 635 3.34e-21 100
MsaG046427 AT5G43990.16 28.339 307 163 13 799 1056 386 684 3.63e-21 100
MsaG046427 AT5G43990.5 28.339 307 163 13 799 1056 386 684 3.63e-21 100
MsaG046427 AT5G43990.17 28.339 307 163 13 799 1056 386 684 3.63e-21 100
MsaG046427 AT5G43990.14 28.339 307 163 13 799 1056 386 684 3.63e-21 100
MsaG046427 AT5G43990.7 35.821 201 106 8 871 1056 423 615 3.67e-21 99.8
MsaG046427 AT5G43990.15 28.339 307 163 13 799 1056 409 707 3.88e-21 100
MsaG046427 AT5G43990.10 28.339 307 163 13 799 1056 409 707 3.88e-21 100
MsaG046427 AT1G76710.4 33.333 174 97 3 886 1057 72 228 2.19e-19 93.6
MsaG046427 AT1G76710.2 33.333 174 97 3 886 1057 72 228 2.50e-19 93.2
MsaG046427 AT1G76710.1 33.333 174 97 3 886 1057 72 228 2.50e-19 93.2
MsaG046427 AT1G76710.3 32.184 174 99 3 886 1057 72 228 2.51e-19 93.6
MsaG046427 AT3G59960.3 33.117 154 87 3 904 1057 112 249 5.38e-19 89.4
MsaG046427 AT3G59960.2 33.117 154 87 3 904 1057 112 249 5.38e-19 89.4
MsaG046427 AT3G59960.4 33.117 154 87 3 904 1057 112 249 5.38e-19 89.4
MsaG046427 AT3G59960.1 33.117 154 87 3 904 1057 112 249 8.39e-19 89.4
MsaG046427 AT2G24740.1 30.516 213 121 6 862 1055 548 752 8.64e-19 92.4
MsaG046427 AT4G13460.1 26.829 287 158 8 764 1034 386 636 3.07e-18 90.5
MsaG046427 AT4G13460.2 26.829 287 158 8 764 1034 386 636 3.07e-18 90.5
MsaG046427 AT2G44150.1 33.766 154 86 3 904 1057 117 254 4.29e-18 87.8
MsaG046427 AT5G42400.7 36.364 143 75 4 915 1057 1261 1387 3.40e-17 87.8
MsaG046427 AT5G42400.2 36.364 143 75 4 915 1057 1261 1387 3.40e-17 87.8
MsaG046427 AT5G42400.8 36.364 143 75 4 915 1057 1261 1387 3.40e-17 87.8
MsaG046427 AT5G42400.5 36.364 143 75 4 915 1057 1261 1387 3.40e-17 87.8
MsaG046427 AT5G42400.4 36.364 143 75 4 915 1057 1261 1387 3.40e-17 87.8
MsaG046427 AT5G42400.1 36.364 143 75 4 915 1057 1261 1387 3.40e-17 87.8
MsaG046427 AT5G42400.3 36.364 143 75 4 915 1057 1261 1387 3.40e-17 87.8
MsaG046427 AT5G42400.6 36.364 143 75 4 915 1057 1261 1387 3.40e-17 87.8
MsaG046427 AT2G33290.1 28.571 189 113 3 862 1034 455 637 6.44e-17 86.3
MsaG046427 AT2G33290.3 28.571 189 113 3 862 1034 455 637 6.44e-17 86.3
MsaG046427 AT2G33290.4 28.571 189 113 3 862 1034 455 637 6.44e-17 86.3
MsaG046427 AT2G33290.2 28.571 189 113 3 862 1034 455 637 6.44e-17 86.3
MsaG046427 AT3G03750.1 31.841 201 102 7 874 1057 151 333 5.06e-15 78.2
MsaG046427 AT2G23380.2 29.577 142 81 4 896 1037 520 642 4.80e-12 70.9
MsaG046427 AT2G23380.1 29.577 142 81 4 896 1037 747 869 5.81e-12 70.5

Find 183 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATAATTCCTTGTTTC+TGG 0.086986 8:+84454048 None:intergenic
GTTCTTCCATATGTGAATTT+TGG 0.115291 8:+84458875 None:intergenic
TGATACTAAGGAAGGGATTT+TGG 0.191525 8:-84452611 MsaT046427.1:CDS
ATTCCTTGTGGTGAATATTT+TGG 0.203106 8:-84451893 MsaT046427.1:CDS
CTCATTATCATTAGTTGGTT+TGG 0.232403 8:+84454098 None:intergenic
TATCACTATGAGCTTGTTCT+TGG 0.247078 8:-84449570 MsaT046427.1:CDS
GGTGAAACACTCATGCTTTC+CGG 0.248495 8:-84452226 MsaT046427.1:CDS
TTGGAAACATGGAGGAATTA+TGG 0.258951 8:-84451874 MsaT046427.1:CDS
GATAAAATATCAAGATTATT+AGG 0.259035 8:+84451656 None:intergenic
TTTCTTACAAAAGGTGAAAC+TGG 0.268726 8:+84452408 None:intergenic
TCATCATGAAGGATTGAAAA+TGG 0.305942 8:-84453965 MsaT046427.1:CDS
ATCATTGATTCTACTAGATA+TGG 0.309812 8:-84450216 MsaT046427.1:CDS
GCCTTCAAGTTAGCAGAAAA+AGG 0.313475 8:-84452837 MsaT046427.1:CDS
TCTTGTTAACAGATTGCTTT+TGG 0.314838 8:-84449612 MsaT046427.1:intron
ATTGCTACATAAAAGATAAT+TGG 0.315181 8:-84453535 MsaT046427.1:CDS
TTATTTAGATCTTGGAATAA+TGG 0.324211 8:-84453692 MsaT046427.1:CDS
TGTCGTCGTTATTTAGATCT+TGG 0.324491 8:-84453700 MsaT046427.1:CDS
ATTTGCAACTTCTAAGCATT+GGG 0.325626 8:+84451715 None:intergenic
TATCATAATCATTATCAAAA+AGG 0.325959 8:+84451028 None:intergenic
TAGTAGAATCAATGATATAT+TGG 0.331163 8:+84450223 None:intergenic
TTCTGCTCATTATCATTAGT+TGG 0.332370 8:+84454093 None:intergenic
CCATTCTGCAATATTCTGTT+TGG 0.337846 8:+84450635 None:intergenic
GCGCGATGAACTTTAAGTTT+AGG 0.338143 8:+84452814 None:intergenic
GATTTCATTGTGATCATTAC+CGG 0.338338 8:+84452207 None:intergenic
AATTCAAATCATGCAAGATT+AGG 0.339615 8:-84451527 MsaT046427.1:CDS
ACTTGGTAACTCACAAGATT+TGG 0.348054 8:+84449818 None:intergenic
ATTCGACCATTGTTGTCATA+TGG 0.348924 8:+84450964 None:intergenic
TGCTCCATTACAACACTTGC+AGG 0.355492 8:+84451572 None:intergenic
CAACAATGGTCGAATCATAT+TGG 0.361050 8:-84450956 MsaT046427.1:CDS
TGTCTCGATTCATTAATAAT+AGG 0.361744 8:-84450188 MsaT046427.1:intron
ACCAAACACTTGGCGATCAT+TGG 0.363929 8:-84452069 MsaT046427.1:CDS
AGTGTTTAAAACAGAGAAAA+AGG 0.368260 8:-84450594 MsaT046427.1:intron
ATTCAAATCATGCAAGATTA+GGG 0.371815 8:-84451526 MsaT046427.1:CDS
TGAAACTGTAGTTCAGTCTA+TGG 0.375234 8:-84452710 MsaT046427.1:CDS
TGCTAACTTGAAGGCTTGCT+TGG 0.375788 8:+84452845 None:intergenic
TGATGAGTTTCATATGGTAT+AGG 0.380471 8:+84453982 None:intergenic
TCCAATGATCGCCAAGTGTT+TGG 0.384388 8:+84452068 None:intergenic
CTTCACTAACAAGAAACAAT+TGG 0.390759 8:-84451978 MsaT046427.1:CDS
AAAGGATCTCCTTGTCTTTG+TGG 0.393605 8:-84449546 MsaT046427.1:CDS
GACACGCAACATCATGCTTC+TGG 0.394150 8:-84452883 MsaT046427.1:CDS
AGTTGCAGGGATGGGGTGTA+AGG 0.397984 8:-84450499 MsaT046427.1:intron
GTCTACCGGTGATGCTTCTC+TGG 0.400935 8:-84451786 MsaT046427.1:CDS
CAGAAACAAGGAATTATTCA+TGG 0.401697 8:-84454047 MsaT046427.1:CDS
AGTAGAATCAATGATATATT+GGG 0.403495 8:+84450224 None:intergenic
ATATAAATCTTCCTAGGCCT+TGG 0.406054 8:-84451385 MsaT046427.1:CDS
ACAATGAAATCGATGCTCTT+TGG 0.406896 8:-84452195 MsaT046427.1:CDS
ATAGTTGTTCCTCCACAATA+TGG 0.409336 8:+84452463 None:intergenic
CCTTCATGATGAGTTTCATA+TGG 0.413328 8:+84453976 None:intergenic
TATGAGCTTGTTCTTGGAAA+AGG 0.413396 8:-84449564 MsaT046427.1:CDS
TGTGGAGGAACAACTATTGA+TGG 0.415163 8:-84452457 MsaT046427.1:CDS
GCAGAGATGTTTCTTACAAA+AGG 0.416921 8:+84452399 None:intergenic
TATTTGCAACTTCTAAGCAT+TGG 0.416934 8:+84451714 None:intergenic
AGGAACAATATCAAGGCCTT+TGG 0.419557 8:-84452665 MsaT046427.1:CDS
ATCACAAGTTTCACAACAAC+AGG 0.420819 8:+84451059 None:intergenic
GATACTGCAAAAGACATATT+CGG 0.421547 8:-84451009 MsaT046427.1:CDS
TTGTGGAGAGCATGGATTGT+AGG 0.425950 8:-84449793 MsaT046427.1:CDS
GCCTCTGGCTGTGTGGTTCA+AGG 0.429442 8:-84458713 MsaT046427.1:intron
TCTTACACACTGCCTTCCCT+TGG 0.434119 8:+84452561 None:intergenic
CTGCAATATTCTGTTTGGAC+AGG 0.434374 8:+84450640 None:intergenic
GATTGTAGGCGTTCACGTAT+TGG 0.438324 8:-84449779 MsaT046427.1:CDS
CTAATCATGATAATGCTTCC+TGG 0.441778 8:-84458901 None:intergenic
ATGGGGTGTAAGGGCTGGCG+AGG 0.443435 8:-84450489 MsaT046427.1:CDS
CGTGTCGCTGCTACCAGAAA+AGG 0.443595 8:+84452900 None:intergenic
AACTACATTCATCTGAGTCT+TGG 0.444751 8:-84453511 MsaT046427.1:CDS
ATCAAGGCCTTTGGATGAAA+CGG 0.448844 8:-84452656 MsaT046427.1:CDS
GAATGGAATTCGCGTTAAGC+TGG 0.452505 8:-84450618 MsaT046427.1:CDS
TGCATGATTTGAATTTATGA+TGG 0.452728 8:+84451535 None:intergenic
CCATGCTCTCCACAAGAACT+TGG 0.454933 8:+84449801 None:intergenic
GTAGACAAACTTAGTTGCTT+AGG 0.456274 8:+84451803 None:intergenic
CATCATGCTTCTGGCTCTGA+TGG 0.457335 8:-84452874 MsaT046427.1:CDS
CTGCTCGTAATGTGATGGTT+TGG 0.462485 8:-84453750 MsaT046427.1:CDS
ACTACATTCATCTGAGTCTT+GGG 0.468423 8:-84453510 MsaT046427.1:CDS
CAGGGATGGGGTGTAAGGGC+TGG 0.469537 8:-84450494 MsaT046427.1:CDS
TCAAACAGTAGAGCTGCTTC+AGG 0.470095 8:-84453459 MsaT046427.1:CDS
TGGTGTCCAAAATTCACATA+TGG 0.472124 8:-84458881 MsaT046427.1:CDS
ATCTGAAGAACATGATACTA+AGG 0.473578 8:-84452623 MsaT046427.1:CDS
GTTGGAAGTGGATGAGCCTC+TGG 0.475273 8:-84458728 MsaT046427.1:CDS
TTCGACCATTGTTGTCATAT+GGG 0.478371 8:+84450965 None:intergenic
GTAAAGTTCAACCAAGGCCT+AGG 0.481351 8:+84451374 None:intergenic
CCAAGTTCTTGTGGAGAGCA+TGG 0.483255 8:-84449801 MsaT046427.1:CDS
GTTTCATATGGTATAGGTTG+AGG 0.485624 8:+84453988 None:intergenic
TAAGCATTGGGGCTGCTGCA+TGG 0.489162 8:+84451727 None:intergenic
AGATCCTGCAAGTGTTGTAA+TGG 0.497514 8:-84451576 MsaT046427.1:CDS
TCTCTGGAAGCGACTGGGAA+AGG 0.498430 8:-84451770 MsaT046427.1:CDS
ACTATCATCTTCTGAATGGT+TGG 0.498986 8:-84458746 MsaT046427.1:CDS
TGAACTACAGTTTCACTCAC+TGG 0.501437 8:+84452718 None:intergenic
CATGACAGTTTGAATTTGAA+CGG 0.503443 8:+84452359 None:intergenic
ATGTTGTAAACAAAACTTGA+CGG 0.508412 8:-84451618 MsaT046427.1:CDS
GATGCTTCTCTGGAAGCGAC+TGG 0.509264 8:-84451776 MsaT046427.1:CDS
GGAACCATGATGTGATGAAA+TGG 0.509458 8:-84452939 MsaT046427.1:CDS
TTTGAAATCTTAAGTTCGGC+AGG 0.510820 8:+84451830 None:intergenic
GGTTCTAGTAAAGGCGTCCT+CGG 0.510931 8:+84449511 None:intergenic
CGCTTCCAGAGAAGCATCAC+CGG 0.511341 8:+84451781 None:intergenic
TGGAAAGAGAATTGGCATGC+AGG 0.512907 8:-84454165 MsaT046427.1:CDS
TGATCCACTACACAAATCAC+TGG 0.512955 8:+84451446 None:intergenic
GGGAAGGCAGTGTGTAAGAA+TGG 0.516933 8:-84452557 MsaT046427.1:CDS
GCACCGGCACAACAAAACTT+AGG 0.517014 8:-84452979 MsaT046427.1:CDS
GAATTTCGAGGTTCTAGTAA+AGG 0.518272 8:+84449502 None:intergenic
TTTGAGCATTGTTTGCACTT+TGG 0.518387 8:+84453477 None:intergenic
AAGATTAGGGTCATCGCAAA+AGG 0.518584 8:-84451513 MsaT046427.1:CDS
CAGAACTATCATCTTCTGAA+TGG 0.523201 8:-84458750 MsaT046427.1:CDS
TCAAATGTGCAAGTGCTGAT+TGG 0.523479 8:-84454140 MsaT046427.1:CDS
CATTATAAATTGTCGCGCAA+TGG 0.523906 8:+84453930 None:intergenic
CCACACTCTCCGTGATGCAC+CGG 0.524365 8:-84452995 MsaT046427.1:CDS
AGTGAAGGAATTAAAACAAA+GGG 0.524593 8:+84451994 None:intergenic
TGTGAGTTACCAAGTTCTTG+TGG 0.525444 8:-84449810 MsaT046427.1:CDS
AATGGTTCAGAGGTTGCAAA+AGG 0.527498 8:-84453674 MsaT046427.1:intron
GAGTCGATTGATCGAAAGAC+AGG 0.528767 8:-84450247 MsaT046427.1:CDS
TTCTGATATTCAGAAGACTA+AGG 0.529912 8:-84451684 MsaT046427.1:CDS
AAAACCATTTCATCACATCA+TGG 0.534595 8:+84452935 None:intergenic
TGAACAACCGTTTCATCCAA+AGG 0.536185 8:+84452649 None:intergenic
CAAACTGTCATGCGTTGAAG+AGG 0.538864 8:-84452348 MsaT046427.1:CDS
ATCTTCTGAATGGTTGGAAG+TGG 0.539445 8:-84458740 MsaT046427.1:CDS
AACTCCAGTGATTTGTGTAG+TGG 0.540772 8:-84451450 MsaT046427.1:CDS
AGGCACACAACAGACGCAAA+AGG 0.540815 8:-84450409 MsaT046427.1:intron
CAATTGTTTCTTGTTAGTGA+AGG 0.541725 8:+84451979 None:intergenic
GTTGCAGGGATGGGGTGTAA+GGG 0.547166 8:-84450498 MsaT046427.1:intron
ACATTTGTTTGTGAGTACAT+TGG 0.551618 8:-84450452 MsaT046427.1:CDS
AGCAATATATAAATCTTCCT+AGG 0.554355 8:-84451391 MsaT046427.1:CDS
TGATTCAAGTTGCAGGGATG+GGG 0.557163 8:-84450506 MsaT046427.1:intron
TCAACAAAGGAACAATATCA+AGG 0.559338 8:-84452672 MsaT046427.1:CDS
AACACTTGGCGATCATTGGA+TGG 0.561012 8:-84452065 MsaT046427.1:CDS
GAAGAACATGATACTAAGGA+AGG 0.565715 8:-84452619 MsaT046427.1:CDS
AAAGTTCTTACTCCATATTG+TGG 0.565746 8:-84452475 MsaT046427.1:CDS
CTTTATTATGATCATTACCA+TGG 0.565928 8:+84452155 None:intergenic
CCAAACAGAATATTGCAGAA+TGG 0.566794 8:-84450635 MsaT046427.1:CDS
TATGTGACAAAACCGATGCT+TGG 0.569034 8:-84451350 MsaT046427.1:CDS
ATCTTGGAATAATGGTTCAG+AGG 0.569242 8:-84453684 MsaT046427.1:CDS
ATCGTCTAGTCTTGAATATG+AGG 0.569644 8:-84451324 MsaT046427.1:intron
ATGCTTCTCTGGAAGCGACT+GGG 0.572992 8:-84451775 MsaT046427.1:CDS
TAATAATGTAGAGCATTTCG+AGG 0.573067 8:+84453896 None:intergenic
TTCTTACAAAAGGTGAAACT+GGG 0.573627 8:+84452409 None:intergenic
AAAAGAATCATCATCGTCGA+TGG 0.582137 8:+84452267 None:intergenic
TATACACATTCTAGACAAGA+AGG 0.584505 8:-84452790 MsaT046427.1:CDS
GGTTTGGAAGCAGTTTGCTA+TGG 0.584551 8:-84453734 MsaT046427.1:CDS
TGATGACATAAGTTGTGGAA+TGG 0.585460 8:-84451477 MsaT046427.1:CDS
TCAAGCATATGTCGAATCCA+AGG 0.585769 8:-84452578 MsaT046427.1:CDS
TCTGAGATCTTGTTCAACAA+AGG 0.590062 8:-84452685 MsaT046427.1:CDS
GACTGGGAAAGGAAATCAGA+TGG 0.591719 8:-84451759 MsaT046427.1:CDS
ACTGGGAAAGGAAATCAGAT+GGG 0.593037 8:-84451758 MsaT046427.1:CDS
CAATGGTCGAATCATATTGG+AGG 0.593156 8:-84450953 MsaT046427.1:intron
TTTGTTGTGCCGGTGCATCA+CGG 0.594835 8:+84452986 None:intergenic
ACTAGAAAACTCAGTTACCA+TGG 0.596296 8:+84452753 None:intergenic
ATTGGAATCACATGTTCAGA+AGG 0.597682 8:-84451960 MsaT046427.1:CDS
CCATATGAAACTCATCATGA+AGG 0.598099 8:-84453976 MsaT046427.1:CDS
ACCAGAAAAGGAAAGAAATG+TGG 0.599513 8:+84452912 None:intergenic
TTTGCTAATGACCAAACACT+TGG 0.599943 8:-84452079 MsaT046427.1:CDS
AAGCAACTAAGTTTGTCTAC+CGG 0.600409 8:-84451800 MsaT046427.1:CDS
AACACTGTATCGATCTCCAA+TGG 0.602474 8:+84452292 None:intergenic
AAATATGAAGAAAGTTGTAG+TGG 0.603207 8:-84452325 MsaT046427.1:CDS
TTTGCAACTTCTAAGCATTG+GGG 0.615772 8:+84451716 None:intergenic
TGTTTGTGAGTACATTGGAG+AGG 0.621427 8:-84450447 MsaT046427.1:CDS
TGGATGAGCCTCTGGCTGTG+TGG 0.621771 8:-84458720 MsaT046427.1:CDS
GAACTACAGTTTCACTCACT+GGG 0.623665 8:+84452719 None:intergenic
AATAATGTAGAGCATTTCGA+GGG 0.627317 8:+84453897 None:intergenic
AACAGTAGAGCTGCTTCAGG+AGG 0.629701 8:-84453456 MsaT046427.1:intron
CCGGTGCATCACGGAGAGTG+TGG 0.630952 8:+84452995 None:intergenic
AGGTACTGTGGAGGTACCCA+TGG 0.632757 8:-84452770 MsaT046427.1:CDS
CTAGAAAACTCAGTTACCAT+GGG 0.635174 8:+84452754 None:intergenic
TAGTGAAGGAATTAAAACAA+AGG 0.635878 8:+84451993 None:intergenic
AAGAACATGATACTAAGGAA+GGG 0.637456 8:-84452618 MsaT046427.1:CDS
GTTCTTACTCCATATTGTGG+AGG 0.638511 8:-84452472 MsaT046427.1:CDS
CTAGACGATGGACCAAGCAT+CGG 0.639421 8:+84451338 None:intergenic
TGTGGATCTTCAAAATGCCG+AGG 0.639813 8:-84449528 MsaT046427.1:CDS
TTATGTGATGACATAAGTTG+TGG 0.641242 8:-84451482 MsaT046427.1:CDS
TTTGAAGATCCACAAAGACA+AGG 0.645206 8:+84449537 None:intergenic
ACCTTGAACCACACAGCCAG+AGG 0.648378 8:+84458712 None:intergenic
GCTGGCGAGGCTATTTCGCG+CGG 0.649591 8:-84450476 MsaT046427.1:CDS
CAGACAGAGTCTTCTAACCA+TGG 0.652378 8:-84452172 MsaT046427.1:CDS
TTGAAATCTTAAGTTCGGCA+GGG 0.652712 8:+84451831 None:intergenic
CAAGCATATGTCGAATCCAA+GGG 0.655879 8:-84452577 MsaT046427.1:CDS
CTGGGAAAGGAAATCAGATG+GGG 0.659361 8:-84451757 MsaT046427.1:CDS
AGAAGCTGCTCGTAATGTGA+TGG 0.665497 8:-84453755 MsaT046427.1:CDS
CATATGTCGAATCCAAGGGA+AGG 0.666323 8:-84452573 MsaT046427.1:CDS
TTTCCAAAATATTCACCACA+AGG 0.667157 8:+84451890 None:intergenic
TTCTAGACAAGAAGGTACTG+TGG 0.669717 8:-84452782 MsaT046427.1:CDS
TTGGAATCACATGTTCAGAA+GGG 0.670572 8:-84451959 MsaT046427.1:CDS
AAAGCATGAGTGTTTCACCT+AGG 0.681035 8:+84452230 None:intergenic
AAGTTCCCATATGACAACAA+TGG 0.685235 8:-84450970 MsaT046427.1:CDS
TCATATTCAAGACTAGACGA+TGG 0.695691 8:+84451326 None:intergenic
ACATAGGTAAAGTTCAACCA+AGG 0.713958 8:+84451368 None:intergenic
TAGACAAGAAGGTACTGTGG+AGG 0.715271 8:-84452779 MsaT046427.1:CDS
TGGGAAAGGAAATCAGATGG+GGG 0.738924 8:-84451756 MsaT046427.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr8 gene 84449515 84458917 84449515 ID=MsaG046427
Chr8 mRNA 84449515 84458917 84449515 ID=MsaT046427.1;Parent=MsaG046427
Chr8 exon 84449515 84449622 84449515 ID=MsaT046427.1.exon11;Parent=MsaT046427.1
Chr8 CDS 84449515 84449622 84449515 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84449760 84449847 84449760 ID=MsaT046427.1.exon10;Parent=MsaT046427.1
Chr8 CDS 84449760 84449847 84449760 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84450189 84450326 84450189 ID=MsaT046427.1.exon9;Parent=MsaT046427.1
Chr8 CDS 84450189 84450326 84450189 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84450410 84450513 84450410 ID=MsaT046427.1.exon8;Parent=MsaT046427.1
Chr8 CDS 84450410 84450513 84450410 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84450595 84450711 84450595 ID=MsaT046427.1.exon7;Parent=MsaT046427.1
Chr8 CDS 84450595 84450711 84450595 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84450954 84451115 84450954 ID=MsaT046427.1.exon6;Parent=MsaT046427.1
Chr8 CDS 84450954 84451115 84450954 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84451325 84453049 84451325 ID=MsaT046427.1.exon5;Parent=MsaT046427.1
Chr8 CDS 84451325 84453049 84451325 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84453457 84453567 84453457 ID=MsaT046427.1.exon4;Parent=MsaT046427.1
Chr8 CDS 84453457 84453567 84453457 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84453675 84453785 84453675 ID=MsaT046427.1.exon3;Parent=MsaT046427.1
Chr8 CDS 84453675 84453785 84453675 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84453879 84454187 84453879 ID=MsaT046427.1.exon2;Parent=MsaT046427.1
Chr8 CDS 84453879 84454187 84453879 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Chr8 exon 84458714 84458917 84458714 ID=MsaT046427.1.exon1;Parent=MsaT046427.1
Chr8 CDS 84458714 84458917 84458714 ID=cds.MsaT046427.1;Parent=MsaT046427.1
Gene Sequence

>MsaT046427.1

ATGATAATGCTTCCTGGTGTCCAAAATTCACATATGGAAGAACTTATTTGTGTTGAAAATCGTCAAGATGACATTTTCAAATTTGATGAAGAAGTCGTTGAAGTTCAATGCGAAACATCACGAAACAACAACAATAGCGAAGAAGCAGAACTATCATCTTCTGAATGGTTGGAAGTGGATGAGCCTCTGGCTGTGTGGTTCAAGTGGAAAGAGAATTGGCATGCAGGAATCAAATGTGCAAGTGCTGATTGGCCATTATCAACCATAAAAGCCAAACCAACTAATGATAATGAGCAGAACAAATATATTGTCATTTTTTCGCCAGAAACAAGGAATTATTCATGGATTGATATGCTTCTTGTTAAATCAATTGCTGAGTTTCCTCAACCTATACCATATGAAACTCATCATGAAGGATTGAAAATGGTACAAGACTTGACCATTGCGCGACAATTTATAATGCAAAAGCTCGCCCTCGAAATGCTCTACATTATTAATCAGTTTCATCTTAATGCTTTGATAGAAGCTGCTCGTAATGTGATGGTTTGGAAGCAGTTTGCTATGGAAGCTTCTCATTGTCGTCGTTATTTAGATCTTGGAATAATGGTTCAGAGGTTGCAAAAGAACATAATGCATTGCTACATAAAAGATAATTGGAAACTACATTCATCTGAGTCTTGGGCAGAAAGATGCCAAAGTGCAAACAATGCTCAAACAGTAGAGCTGCTTCAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCCACACTCTCCGTGATGCACCGGCACAACAAAACTTAGGTTTTGAGTGGAATACATGGAACCATGATGTGATGAAATGGTTTTCCACATTTCTTTCCTTTTCTGGTAGCAGCGACACGCAACATCATGCTTCTGGCTCTGATGGTATGCACCAAGCAAGCCTTCAAGTTAGCAGAAAAAGGCCTAAACTTAAAGTTCATCGCGCATATACACATTCTAGACAAGAAGGTACTGTGGAGGTACCCATGGTAACTGAGTTTTCTAGTCAATTGATCAGCCCAGTGAGTGAAACTGTAGTTCAGTCTATGGATTCTGAGATCTTGTTCAACAAAGGAACAATATCAAGGCCTTTGGATGAAACGGTTGTTCAAATATCTGAAGAACATGATACTAAGGAAGGGATTTTGGATCGACAATGTCAAGCATATGTCGAATCCAAGGGAAGGCAGTGTGTAAGAATGGCAATTAAAAAAGATATATATTGCTGTGCGCATTTTTCAAAAAAGAAAGAAAAAAGTGTTAAAGTTCTTACTCCATATTGTGGAGGAACAACTATTGATGGTTCTAGATGTAAGAATCATTCTCTTCCCAGTTTCACCTTTTGTAAGAAACATCTCTGCATTGCTGAGAGAAACAACCGTTCAAATTCAAACTGTCATGCGTTGAAGAGGAAATATGAAGAAAGTTGTAGTGGTCAAAAAATTCCATTGGAGATCGATACAGTGTTGACCATCGACGATGATGATTCTTTTTGTGCAAAGAATATCCTAGGTGAAACACTCATGCTTTCCGGTAATGATCACAATGAAATCGATGCTCTTTGGCAGACAGAGTCTTCTAACCATGGTAATGATCATAATAAAGACTCTTGTTTTCATAATGAGAATGTCAATAAGTGTAAGATTTGCTTTGAAGAATTTGCTAATGACCAAACACTTGGCGATCATTGGATGGAAAATCATAAAAAAGAAGCACAATGGTTATTTAGAAGTTATGCTTGTGCCCTTTGTTTTAATTCCTTCACTAACAAGAAACAATTGGAATCACATGTTCAGAAGGGACACTGTGTGAAATTTGATGAAAACTGCTTGCTTTTACTATGTATTCCTTGTGGTGAATATTTTGGAAACATGGAGGAATTATGGCTGCATGTTAAGTCAGTTCACCCTGCCGAACTTAAGATTTCAAAATCTCCTAAGCAACTAAGTTTGTCTACCGGTGATGCTTCTCTGGAAGCGACTGGGAAAGGAAATCAGATGGGGGAAACATCCATGCAGCAGCCCCAATGCTTAGAAGTTGCAAATATTTTCTCTTCTGATATTCAGAAGACTAAGGATCAGCCTAATAATCTTGATATTTTATCAAACGCTTGCACTGCATGTTGTAAACAAAACTTGACGGAAAAATCTACAGATGCATCAGATCCTGCAAGTGTTGTAATGGAGCAAGATGAGTCTCAGTCCATCATAAATTCAAATCATGCAAGATTAGGGTCATCGCAAAAGGCTCTAGTGTTATGTGATGACATAAGTTGTGGAATGGAATCAACTCCAGTGATTTGTGTAGTGGATCAAAAAATACTAAACTCTCTTTTTGAGCAAGGAGAGCAATATATAAATCTTCCTAGGCCTTGGTTGAACTTTACCTATGTGACAAAACCGATGCTTGGTCCATCGTCTAGTCTTGAATATGAGGGTCAGCAACTGAAATGTTATTGCTCATCTTCTACCTGTTGTTGTGAAACTTGTGATCATGTATACCTTTTTGATAATGATTATGATACTGCAAAAGACATATTCGGAAAAACAATGCGCAAAAAGTTCCCATATGACAACAATGGTCGAATCATATTGGAGGAAGGTTATCTTGTGTACGAGTGCAACGATAAGTGTAGATGTGATAAAACCTGTCCAAACAGAATATTGCAGAATGGAATTCGCGTTAAGCTGGAAGTGTTTAAAACAGAGAAAAAGGGATGGGGTGTAAGGGCTGGCGAGGCTATTTCGCGCGGAACATTTGTTTGTGAGTACATTGGAGAGGTTTTAGACGAGCAAGAGGCACACAACAGACGCAAAAGTTATGGAAAAGAACATTGCAGTTATTTCTATGTTGTTGATGCTCGTGTTAATGACATGAGTCGATTGATCGAAAGACAGGCCCAATATATCATTGATTCTACTAGATATGGAAATGTGTCTCGATTCATTAATAATAGTTGTTCACCAAATCTTGTGAGTTACCAAGTTCTTGTGGAGAGCATGGATTGTAGGCGTTCACGTATTGGTCTCTATGCAAGTCGAGATATTGCTTTTGGTGAAGAAATGACGTGTAATTATCACTATGAGCTTGTTCTTGGAAAAGGATCTCCTTGTCTTTGTGGATCTTCAAAATGCCGAGGACGCCTTTACTAG

Protein sequence

>MsaT046427.1

MIMLPGVQNSHMEELICVENRQDDIFKFDEEVVEVQCETSRNNNNSEEAELSSSEWLEVDEPLAVWFKWKENWHAGIKCASADWPLSTIKAKPTNDNEQNKYIVIFSPETRNYSWIDMLLVKSIAEFPQPIPYETHHEGLKMVQDLTIARQFIMQKLALEMLYIINQFHLNALIEAARNVMVWKQFAMEASHCRRYLDLGIMVQRLQKNIMHCYIKDNWKLHSSESWAERCQSANNAQTVELLQEELFDSILWNDVHTLRDAPAQQNLGFEWNTWNHDVMKWFSTFLSFSGSSDTQHHASGSDGMHQASLQVSRKRPKLKVHRAYTHSRQEGTVEVPMVTEFSSQLISPVSETVVQSMDSEILFNKGTISRPLDETVVQISEEHDTKEGILDRQCQAYVESKGRQCVRMAIKKDIYCCAHFSKKKEKSVKVLTPYCGGTTIDGSRCKNHSLPSFTFCKKHLCIAERNNRSNSNCHALKRKYEESCSGQKIPLEIDTVLTIDDDDSFCAKNILGETLMLSGNDHNEIDALWQTESSNHGNDHNKDSCFHNENVNKCKICFEEFANDQTLGDHWMENHKKEAQWLFRSYACALCFNSFTNKKQLESHVQKGHCVKFDENCLLLLCIPCGEYFGNMEELWLHVKSVHPAELKISKSPKQLSLSTGDASLEATGKGNQMGETSMQQPQCLEVANIFSSDIQKTKDQPNNLDILSNACTACCKQNLTEKSTDASDPASVVMEQDESQSIINSNHARLGSSQKALVLCDDISCGMESTPVICVVDQKILNSLFEQGEQYINLPRPWLNFTYVTKPMLGPSSSLEYEGQQLKCYCSSSTCCCETCDHVYLFDNDYDTAKDIFGKTMRKKFPYDNNGRIILEEGYLVYECNDKCRCDKTCPNRILQNGIRVKLEVFKTEKKGWGVRAGEAISRGTFVCEYIGEVLDEQEAHNRRKSYGKEHCSYFYVVDARVNDMSRLIERQAQYIIDSTRYGNVSRFINNSCSPNLVSYQVLVESMDCRRSRIGLYASRDIAFGEEMTCNYHYELVLGKGSPCLCGSSKCRGRLY*