AlfalfaGEDB | MsaG046431

M. sativa ssp. caerulea / MsaG046431

KEGG: -
GO: -
PFAM: PF04844.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046431	XP_039688773.1	97.887	142	3	0	1	142	1	142	1.90e-96	285

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046431	sp\|P0DKG3\|OFP9_ARATH	57.143	112	37	2	40	140	296	407	4.50e-34	127

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046431	tr\|G7JKF5\|G7JKF5_MEDTR	98.571	140	2	0	1	140	1	140	2.26e-96	284

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TFs/TRs:

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Gene ID	Type	Classification
MsaG046431	TF	OFP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000045	MsaG046431	0.822041	5.153990e-53	1.196565e-50
MsaG000127	MsaG046431	0.833978	7.100431e-56	2.306761e-53
MsaG000128	MsaG046431	0.863074	6.405465e-64	5.606716e-61
MsaG000198	MsaG046431	0.827775	2.320357e-54	6.305313e-52
MsaG000237	MsaG046431	0.864221	2.831991e-64	2.593812e-61
MsaG000308	MsaG046431	0.849145	7.403288e-60	3.897213e-57
MsaG000352	MsaG046431	0.800699	2.133621e-48	2.930750e-46
MsaG000426	MsaG046431	0.881619	4.387043e-70	8.541904e-67
MsaG000467	MsaG046431	0.822504	4.030021e-53	9.473224e-51
MsaG000476	MsaG046431	0.806924	1.102230e-49	1.748211e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046431	MtrunA17_Chr4g0075391	98.571	140	2	0	1	140	1	140	4.35e-100	284
MsaG046431	MtrunA17_Chr4g0013081	50.000	62	31	0	79	140	312	373	8.71e-15	70.9
MsaG046431	MtrunA17_Chr5g0432531	48.387	62	32	0	79	140	184	245	1.43e-13	66.2
MsaG046431	MtrunA17_Chr7g0244571	50.000	58	29	0	83	140	283	340	3.29e-13	66.2
MsaG046431	MtrunA17_Chr2g0284471	41.538	65	33	1	83	147	249	308	5.11e-12	62.8
MsaG046431	MtrunA17_Chr8g0379681	41.538	65	33	1	83	147	260	319	3.36e-11	60.5
MsaG046431	MtrunA17_Chr1g0177881	46.552	58	31	0	83	140	104	161	5.13e-11	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046431	AT4G04025.1	54.305	151	55	3	4	140	22	172	3.46e-45	147
MsaG046431	AT1G06920.1	41.860	86	45	2	58	138	215	300	4.07e-13	66.2
MsaG046431	AT2G30400.1	48.387	62	28	1	79	140	254	311	1.21e-12	64.7
MsaG046431	AT5G58360.1	39.080	87	41	3	60	138	199	281	1.37e-12	64.3
MsaG046431	AT5G01840.1	48.148	54	28	0	87	140	204	257	2.16e-12	63.5
MsaG046431	AT4G18830.1	43.103	58	33	0	83	140	284	341	2.98e-12	63.9

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Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACAAAGAGGATGCA+AGG	0.595456	8:+84511780	MsaT046431.1:CDS
AAAACCTCAAAACAACAAAG+AGG	0.609556	8:+84511772	MsaT046431.1:CDS
AAAAGGGAGAAGAGGAGAGA+AGG	0.442296	8:+84511973	MsaT046431.1:CDS
AAATCTCAAGTATAAGACTA+TGG	0.438492	8:-84512158	None:intergenic
AAGCTTCAGATCACGGTATT+GGG	0.302120	8:+84513479	MsaT046431.1:CDS
ACCACCACCTCCATCGCTGC+CGG	0.533103	8:-84513433	None:intergenic
ACCGGCAGCGATGGAGGTGG+TGG	0.504290	8:+84513432	MsaT046431.1:CDS
AGAAGAGAAGCTTCAGATCA+CGG	0.552780	8:+84513472	MsaT046431.1:CDS
AGATCACGGTATTGGGGAAG+AGG	0.528372	8:+84513486	MsaT046431.1:CDS
AGCTTCAGATCACGGTATTG+GGG	0.608716	8:+84513480	MsaT046431.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	84511769	84513511	84511769	ID=MsaG046431
Chr8	mRNA	84511769	84513511	84511769	ID=MsaT046431.1;Parent=MsaG046431
Chr8	exon	84511769	84512188	84511769	ID=MsaT046431.1.exon1;Parent=MsaT046431.1
Chr8	CDS	84511769	84512188	84511769	ID=cds.MsaT046431.1;Parent=MsaT046431.1
Chr8	exon	84513425	84513511	84513425	ID=MsaT046431.1.exon2;Parent=MsaT046431.1
Chr8	CDS	84513425	84513511	84513425	ID=cds.MsaT046431.1;Parent=MsaT046431.1

Gene Sequence

>MsaT046431.1

ATGAAAACCTCAAAACAACAAAGAGGATGCAAGGCCTTGTGTTGCAGTAGCAACAGATATAGTGTTTCTTCTTCAGAGGAAGCAGAGAGTTCTTCTTCTGTCTCTGATAGGTTCCCTTCTGTTTCTACACTAGCACATGCCATGGTGCAAGAGAGACTTGACCAAATGATAAGAGAAAAACTTGAAGCTAGACATGTAGAGAGAAAAAGGGAGAAGAGGAGAGAAGGAACTAAGTTTGTTGTAATGTTAGCAACAGAAAAGTGTTCTTATGATCCAAGAGAGGATTTCAGGGAGTCTATGATGGAGATGATAACAGTGAATCGCCTTCAAGATGCGAAAGATCTTCGTAGTTTATTGAACTATTATATGTCGATGAACTCGGAAGAATACCATAGTCTTATACTTGAGATTTTTCATGAGGGCAGCGACCGGCAGCGATGGAGGTGGTGGTGGGCGGCGCTGGGAGGAGAAGAGAAGCTTCAGATCACGGTATTGGGGAAGAGGTGA

Protein sequence

>MsaT046431.1

MKTSKQQRGCKALCCSSNRYSVSSSEEAESSSSVSDRFPSVSTLAHAMVQERLDQMIREKLEARHVERKREKRREGTKFVVMLATEKCSYDPREDFRESMMEMITVNRLQDAKDLRSLLNYYMSMNSEEYHSLILEIFHEGSDRQRWRWWWAALGGEEKLQITVLGKR*