AlfalfaGEDB | MsaG046438

M. sativa ssp. caerulea / MsaG046438

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046438	AES92694.2	90.186	377	1	2	1	341	1	377	0.0	691

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046438	sp\|Q2MHE4\|HT1_ARATH	75.128	390	48	4	1	341	1	390	0.0	574

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046438	tr\|G7JKG7\|G7JKG7_MEDTR	90.186	377	1	2	1	341	1	377	0.0	691

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000197	MsaG046438	0.808249	5.785789e-50	9.472247e-48
MsaG000253	MsaG046438	0.805479	2.214003e-49	3.394042e-47
MsaG000621	MsaG046438	0.800894	1.947773e-48	2.687113e-46
MsaG000681	MsaG046438	0.818546	3.233389e-52	6.844608e-50
MsaG000705	MsaG046438	0.802667	8.456228e-49	1.214677e-46
MsaG000761	MsaG046438	0.829876	7.237279e-55	2.087139e-52
MsaG000994	MsaG046438	0.801645	1.369339e-48	1.921568e-46
MsaG001045	MsaG046438	0.828189	1.846652e-54	5.076828e-52
MsaG002298	MsaG046438	0.835974	2.242215e-56	7.732913e-54
MsaG004010	MsaG046438	0.849547	5.729432e-60	3.058011e-57

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046438	MtrunA17_Chr4g0075541	90.186	377	1	2	1	341	8	384	0.0	691
MsaG046438	MtrunA17_Chr3g0117731	55.660	318	99	3	49	331	30	340	2.32e-117	343
MsaG046438	MtrunA17_Chr4g0059121	52.025	321	116	2	49	334	31	348	6.90e-114	334
MsaG046438	MtrunA17_Chr4g0047191	46.026	302	123	3	64	325	29	330	1.40e-98	295
MsaG046438	MtrunA17_Chr4g0047211	46.026	302	123	3	64	325	24	325	2.35e-98	295
MsaG046438	MtrunA17_Chr4g0047201	44.643	336	141	4	14	312	143	470	1.29e-97	298
MsaG046438	MtrunA17_Chr2g0282321	44.315	343	150	4	10	312	90	431	4.86e-97	295
MsaG046438	MtrunA17_Chr3g0090261	45.896	268	110	1	67	299	70	337	5.56e-85	261
MsaG046438	MtrunA17_Chr1g0211611	40.000	260	124	2	72	300	294	552	7.47e-68	223
MsaG046438	MtrunA17_Chr5g0406251	38.408	289	143	3	72	329	288	572	2.63e-67	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046438	AT1G62400.1	75.128	390	48	4	1	341	1	390	0.0	574
MsaG046438	AT5G58950.1	43.144	299	131	2	40	301	170	466	2.38e-85	267
MsaG046438	AT4G31170.7	45.660	265	109	1	70	299	122	386	1.09e-81	254
MsaG046438	AT4G31170.6	45.660	265	109	1	70	299	122	386	1.09e-81	254
MsaG046438	AT4G31170.5	45.660	265	109	1	70	299	122	386	1.09e-81	254
MsaG046438	AT4G31170.1	45.660	265	109	1	70	299	122	386	1.09e-81	254
MsaG046438	AT4G31170.2	45.660	265	109	1	70	299	122	386	1.09e-81	254
MsaG046438	AT4G31170.3	45.660	265	109	1	70	299	122	386	1.09e-81	254
MsaG046438	AT4G31170.8	45.660	265	109	1	70	299	122	386	1.09e-81	254
MsaG046438	AT2G24360.1	43.396	265	115	1	70	299	121	385	3.41e-78	245

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Find 74 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGATGTTTATAGTTT+TGG	0.278056	8:+84607156	MsaT046438.1:CDS
AACCGTGTCTTAGAAGATGA+AGG	0.574483	8:-84605787	None:intergenic
AAGAGCTGTTGCTGTTAAAA+TGG	0.384931	8:+84606014	MsaT046438.1:CDS
ACACGATGCCGAGAGACCAA+AGG	0.646712	8:+84607072	MsaT046438.1:CDS
ACAGCAAAAGCAGCTTGCAC+TGG	0.512530	8:-84607231	None:intergenic
ACATCAACTTTACGAGTATA+CGG	0.331341	8:-84607144	None:intergenic
ACATGTCACAAGGAACTCTG+AGG	0.716241	8:+84606857	MsaT046438.1:CDS
ACTCTGAGAATGTCGAAACG+TGG	0.633173	8:+84605878	MsaT046438.1:CDS
ACTGCTCTGCTTCCTTTCCA+AGG	0.540625	8:+84607201	MsaT046438.1:CDS
ACTGGAGTCATTCCTTGGAA+AGG	0.588223	8:-84607213	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	84605715	84607698	84605715	ID=MsaG046438
Chr8	mRNA	84605715	84607698	84605715	ID=MsaT046438.1;Parent=MsaG046438
Chr8	exon	84605715	84606035	84605715	ID=MsaT046438.1.exon1;Parent=MsaT046438.1
Chr8	CDS	84605715	84606035	84605715	ID=cds.MsaT046438.1;Parent=MsaT046438.1
Chr8	exon	84606808	84607263	84606808	ID=MsaT046438.1.exon2;Parent=MsaT046438.1
Chr8	CDS	84606808	84607263	84606808	ID=cds.MsaT046438.1;Parent=MsaT046438.1
Chr8	exon	84607450	84607698	84607450	ID=MsaT046438.1.exon3;Parent=MsaT046438.1
Chr8	CDS	84607450	84607698	84607450	ID=cds.MsaT046438.1;Parent=MsaT046438.1

Gene Sequence

>MsaT046438.1

ATGGCAGGTTCATGTTTCACCAAACTTCGCCTGCGAAAGTCTAAGAGTAATAAACCTTTACCAGAGCCTTCTCCTTCATCTTCTAAGACACGGTTGAATCCTGATGCAGACAACATGGAAAGAAAAAGATTTGATAGTTTAGAATCATGGTCCATGATATTGGACTCTGAGAATGTCGAAACGTGGGAAGCTTCAAAGGAAGATCAGGAAGAATGGACTGCTGATCTTTCTCAGCTTTTCATAGGTAACAAATTTGCGTCCGGTGCTCACAGTCGAATTTACCGTGGAATTTACAAGCAAAGAGCTGTTGCTGTTAAAATGTTTATTGCAGCATGTAAAAAACCACCTGTGTACTGTATAATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAAAAAGAGCCTTACTCACTTTCAATAGAAACTGTACTAAGGTTAGCACTTGACATATCAAGGGGTATGGAATACCTTCATTCTCAAGGTGTTATTCATAGAGACCTCAAATCAAATAACTTGCTTCTCAATGATGAGATGAGGGTAAAGGTAGCAGATTTCGGGACATCGTGTCTTGAAACACGATGCCGAGAGACCAAAGGAAATATGGGAACTTATCGTTGGATGGCACCTGAGATGATTAAGGAAAAACCGTATACTCGTAAAGTTGATGTTTATAGTTTTGGAATTGTGCTTTGGGAACTCACAACTGCTCTGCTTCCTTTCCAAGGAATGACTCCAGTGCAAGCTGCTTTTGCTGTTTCTGAGAAGAATGAAAGGCCTCCACTGCCTGCAAGTTGTCAGCCAGCACTTGCACACCTAATAAAGCGTTGTTGGTCAGCAAATCCTTCAAAAAGGCCAGATTTCAGTTATATAGTCTCTACTCTTGAGAGGTATGATGAATGTGTGAAGGAAGGTCTTCCTCTAACTCATCATTCAGGACTAGTCAGCAAAAACTTCATTATCGAACGCTTAAAAGGATGTGTCTCCATGAATTCCTCCATACCTGTAAATGCATAA

Protein sequence

>MsaT046438.1

MAGSCFTKLRLRKSKSNKPLPEPSPSSSKTRLNPDADNMERKRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETVLRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVSEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSYIVSTLERYDECVKEGLPLTHHSGLVSKNFIIERLKGCVSMNSSIPVNA*