AlfalfaGEDB | MsaG046518

M. sativa ssp. caerulea / MsaG046518

KEGG: K07560 K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046518	AES92734.2	91.633	251	21	0	1	251	1	251	1.37e-167	473

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046518	sp\|O48686\|SNL3_ARATH	39.735	151	82	2	11	152	13	163	6.60e-24	103
MsaG046518	sp\|O48686\|SNL3_ARATH	32.919	161	99	2	81	235	6	163	3.35e-18	87.0
MsaG046518	sp\|O48686\|SNL3_ARATH	54.286	70	32	0	175	244	17	86	1.82e-13	73.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046518	tr\|G7JLN1\|G7JLN1_MEDTR	91.633	251	21	0	1	251	1	251	6.56e-168	473

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TFs/TRs:

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Gene ID	Type	Classification
MsaG046518	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046518	MtrunA17_Chr4g0075861	91.633	251	21	0	1	251	1	251	1.34e-170	475
MsaG046518	MtrunA17_Chr4g0075971	90.837	251	23	0	1	251	1	251	6.24e-166	472
MsaG046518	MtrunA17_Chr2g0328701	93.578	109	7	0	1	109	18	126	1.30e-71	215
MsaG046518	MtrunA17_Chr2g0328701	39.623	106	54	3	89	192	29	126	5.85e-12	61.2
MsaG046518	MtrunA17_Chr2g0328701	45.588	68	34	1	175	242	32	96	1.49e-11	60.5
MsaG046518	MtrunA17_Chr1g0205821	42.767	159	88	1	89	244	13	171	1.33e-34	122
MsaG046518	MtrunA17_Chr1g0205821	43.275	171	85	4	1	160	1	170	9.12e-32	115
MsaG046518	MtrunA17_Chr3g0077891	43.678	174	89	4	83	247	2	175	3.82e-33	118
MsaG046518	MtrunA17_Chr3g0077891	43.056	144	71	2	25	157	25	168	2.45e-28	106
MsaG046518	MtrunA17_Chr3g0077891	46.377	69	33	1	12	76	99	167	3.20e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046518	AT1G24190.2	39.735	151	82	2	11	152	13	163	6.71e-25	103
MsaG046518	AT1G24190.2	32.919	161	99	2	81	235	6	163	3.34e-19	87.0
MsaG046518	AT1G24190.2	54.286	70	32	0	175	244	17	86	1.88e-14	73.2
MsaG046518	AT1G24190.1	39.735	151	82	2	11	152	13	163	6.71e-25	103
MsaG046518	AT1G24190.1	32.919	161	99	2	81	235	6	163	3.41e-19	87.0
MsaG046518	AT1G24190.1	54.286	70	32	0	175	244	17	86	1.85e-14	73.2
MsaG046518	AT1G24190.3	39.735	151	82	2	11	152	13	163	8.53e-25	103
MsaG046518	AT1G24190.3	32.919	161	99	2	81	235	6	163	3.58e-19	87.0
MsaG046518	AT1G24190.3	54.286	70	32	0	175	244	17	86	2.01e-14	73.2
MsaG046518	AT1G70060.2	38.750	160	88	2	3	152	5	164	2.36e-23	99.4

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Find 37 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCTCAAGGAATTGATAC+GGG	0.604072	8:+85420324	MsaT046518.1:CDS
AATGTGAATCCGTATCTTTC+TGG	0.260796	8:-85420171	None:intergenic
AATTGATACGGGAGGTGTTG+CGG	0.560033	8:+85420335	MsaT046518.1:CDS
ACAAGTTATCACAAATCACA+AGG	0.640420	8:+85420305	MsaT046518.1:CDS
ACTCTTGCTTTGACACCTCT+TGG	0.426483	8:-85419853	None:intergenic
AGAAGTCATGAGTGATTACA+GGG	0.629088	8:+85419816	MsaT046518.1:CDS
AGACCATACAAATTTAATTT+TGG	0.091325	8:+85420380	MsaT046518.1:CDS
AGAGTGCATGAGTTGTTTAA+AGG	0.320962	8:+85419871	MsaT046518.1:CDS
AGCCGTGTTTCATGATAAGT+TGG	0.480965	8:+85420263	MsaT046518.1:CDS
AGGCCATAAACATTTAATTT+TGG	0.093733	8:+85419891	MsaT046518.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	85419721	85420476	85419721	ID=MsaG046518
Chr8	mRNA	85419721	85420476	85419721	ID=MsaT046518.1;Parent=MsaG046518
Chr8	exon	85419721	85420476	85419721	ID=MsaT046518.1.exon1;Parent=MsaT046518.1
Chr8	CDS	85419721	85420476	85419721	ID=cds.MsaT046518.1;Parent=MsaT046518.1

Gene Sequence

>MsaT046518.1

ATGAATAGCTCCACAAGCGATGCTTTGTTTGATGATGCAGGTGCGTATGACCATGCAGTAAAATCTGCATGTCAAGAAAAGTATTCTGAATTTGCAGAAGTCATGAGTGATTACAGGGATGGACGAATTGATCCAAGAGGTGTCAAAGCAAGAGTGCATGAGTTGTTTAAAGGCCATAAACATTTAATTTTGGGAATCAACAACATCATGCCAAAGAATTATGAAATCATACTTCCTCCATCGGATGAAAAACTGAATCGACAAGATGCAACAACTTTTCTCAAACAAGTAAAAGTTGTGTTTCAAGATAAGATGGAAAAATATTATGAGTTTCTACAAGTCATACAAGACTACATGAATCTCACAATTGATATATTAGATGTCATCAAAATTGCGATGAAGCTATTTAAAGGGCATGTCGATTTACTTTCGGGATTCAACTACTTCTTGCCAGAAAGATACGGATTCACATTTCCACTGTTGCAAGATCATAAACAAGGTCATCAATTAGTGATAAAAGATGCATTTCTCAATGAAGTCAAAGCCGTGTTTCATGATAAGTTGGAAAAATATTTTGAGTTTTTACAAGTTATCACAAATCACAAGGCTCAAGGAATTGATACGGGAGGTGTTGCGGCAATAGTGAAAGAGTTATTTAAAGACCATACAAATTTAATTTTGGGATTCAATGCCTTGCTGCCAGAGGAACATCAAATCACACTTCCATTTGAGCTTCATTGCCATGAGACTGGTTAG

Protein sequence

>MsaT046518.1

MNSSTSDALFDDAGAYDHAVKSACQEKYSEFAEVMSDYRDGRIDPRGVKARVHELFKGHKHLILGINNIMPKNYEIILPPSDEKLNRQDATTFLKQVKVVFQDKMEKYYEFLQVIQDYMNLTIDILDVIKIAMKLFKGHVDLLSGFNYFLPERYGFTFPLLQDHKQGHQLVIKDAFLNEVKAVFHDKLEKYFEFLQVITNHKAQGIDTGGVAAIVKELFKDHTNLILGFNALLPEEHQITLPFELHCHETG*