AlfalfaGEDB | MsaG046546

M. sativa ssp. caerulea / MsaG046546

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112
PFAM: PF12165.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046546	Q40359.1	99.611	257	1	0	1	257	1	257	0.0	536

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046546	sp\|Q40359\|ALFIN_MEDSA	99.611	257	1	0	1	257	1	257	0.0	536

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046546	tr\|A0A072UTR5\|A0A072UTR5_MEDTR	99.611	257	0	1	1	257	1	256	0.0	532

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TFs/TRs:

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Gene ID	Type	Classification
MsaG046546	TF	Alfin-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000093	MsaG046546	0.842970	3.479495e-58	1.492635e-55
MsaG000117	MsaG046546	0.851391	1.748502e-60	9.942076e-58
MsaG000309	MsaG046546	0.818347	3.585114e-52	7.550119e-50
MsaG000514	MsaG046546	0.855190	1.440353e-61	9.369058e-59
MsaG000547	MsaG046546	0.818950	2.620103e-52	5.605458e-50
MsaG000578	MsaG046546	0.815174	1.830943e-51	3.554968e-49
MsaG000759	MsaG046546	0.822280	4.539482e-53	1.060668e-50
MsaG000760	MsaG046546	0.829527	8.788704e-55	2.509327e-52
MsaG000828	MsaG046546	0.818389	3.507335e-52	7.394506e-50
MsaG000982	MsaG046546	0.822313	4.461129e-53	1.043314e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046546	MtrunA17_Chr4g0076771	99.611	257	0	1	1	257	1	256	0.0	532
MsaG046546	MtrunA17_Chr8g0343441	71.311	244	70	0	10	253	9	252	3.42e-111	320
MsaG046546	MtrunA17_Chr1g0150821	67.589	253	75	2	10	255	10	262	2.98e-105	305
MsaG046546	MtrunA17_Chr2g0300241	68.548	248	69	4	10	255	12	252	1.77e-104	303
MsaG046546	MtrunA17_Chr2g0329821	67.194	253	77	2	1	253	1	247	2.56e-103	300
MsaG046546	MtrunA17_Chr7g0242511	62.302	252	84	5	4	255	1	241	1.36e-93	275
MsaG046546	MtrunA17_Chr4g0006381	61.508	252	86	5	4	255	1	241	2.78e-90	267

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046546	AT2G02470.1	79.151	259	46	5	1	255	1	255	3.52e-130	369
MsaG046546	AT1G14510.1	78.656	253	49	3	1	253	1	248	5.26e-128	363
MsaG046546	AT2G02470.2	76.744	258	45	5	1	255	1	246	4.40e-124	353
MsaG046546	AT5G20510.1	67.568	259	80	3	1	255	1	259	8.81e-112	322
MsaG046546	AT3G42790.1	66.275	255	80	3	1	255	1	249	1.06e-108	314
MsaG046546	AT5G05610.2	63.347	251	79	5	5	255	3	240	1.73e-95	280
MsaG046546	AT5G05610.1	63.347	251	79	5	5	255	3	240	1.73e-95	280
MsaG046546	AT5G26210.1	67.331	251	72	3	10	255	9	254	5.23e-93	275
MsaG046546	AT3G11200.1	63.137	255	84	4	1	255	1	245	7.65e-89	263
MsaG046546	AT5G20510.2	66.512	215	68	3	45	255	4	218	5.70e-86	255

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Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTTCAACAGTTCG+AGG	0.455840	8:-85696580	None:intergenic
AAATTGAAATTGAGGATGGA+AGG	0.531943	8:+85696538	None:intergenic
AAGGAGAATTTGTGCCTCTA+TGG	0.272744	8:+85697492	MsaT046546.1:CDS
AATAGCAAATACAAATCAAG+TGG	0.591787	8:+85699561	MsaT046546.1:CDS
AATGCTGGCTCGGGAAGTTC+AGG	0.456279	8:-85697564	None:intergenic
ACAACAGATCCAGAATTCAT+CGG	0.639218	8:-85699828	None:intergenic
ACAGTCTTTGAGCTTGCAAC+AGG	0.426181	8:+85699489	MsaT046546.1:CDS
ACATCTTCACACCCTTGGTC+TGG	0.386000	8:-85699706	None:intergenic
ACTAACCGGGATCGCAGAGC+TGG	0.531212	8:-85696767	None:intergenic
AGGAACTGCTAAGCAATCAA+AGG	0.625294	8:+85699509	MsaT046546.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	85696553	85699967	85696553	ID=MsaG046546
Chr8	mRNA	85696553	85699967	85696553	ID=MsaT046546.1;Parent=MsaG046546
Chr8	exon	85696553	85696652	85696553	ID=MsaT046546.1.exon1;Parent=MsaT046546.1
Chr8	CDS	85696553	85696652	85696553	ID=cds.MsaT046546.1;Parent=MsaT046546.1
Chr8	exon	85696751	85696783	85696751	ID=MsaT046546.1.exon2;Parent=MsaT046546.1
Chr8	CDS	85696751	85696783	85696751	ID=cds.MsaT046546.1;Parent=MsaT046546.1
Chr8	exon	85697490	85697718	85697490	ID=MsaT046546.1.exon3;Parent=MsaT046546.1
Chr8	CDS	85697490	85697718	85697490	ID=cds.MsaT046546.1;Parent=MsaT046546.1
Chr8	exon	85699455	85699587	85699455	ID=MsaT046546.1.exon4;Parent=MsaT046546.1
Chr8	CDS	85699455	85699587	85699455	ID=cds.MsaT046546.1;Parent=MsaT046546.1
Chr8	exon	85699689	85699967	85699689	ID=MsaT046546.1.exon5;Parent=MsaT046546.1
Chr8	CDS	85699689	85699967	85699689	ID=cds.MsaT046546.1;Parent=MsaT046546.1

Gene Sequence

>MsaT046546.1

ATGGAAGGAATGGCACAGCACCCAGTACCTCGAACTGTTGAAGAAGTTTTTAGCGATTACAAAGGCAGACGCGCCGGTTTGATCAAAGCTCTCACTACTGACGTTGAAAAGTTTTACCAGCTCTGCGATCCCGAAAAGGAGAATTTGTGCCTCTATGGGTTTCCAAATGAAACATGGGAAGTGAACTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTGGGTATAAACTTTGCTCGGGATGGAATGCAGGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGATAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCCACAGTCTTTGAGCTTGCAACAGGAACTGCTAAGCAATCAAAGGACCAACTGACTGCTCACAACAATGGTAGCAATAGCAAATACAAATCAAGTGGAAAGTCCCGCCAGTCTGAATCCCAGACCAAGGGTGTGAAGATGTCTGCACCGGTCAAAGAAGAGGTTGACAGTGGAGAAGAAGAGGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACCGATGAATTCTGGATCTGTTGTGATATGTGCGAGAAATGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCCAAGGCTGAACACATCAAGCAATACAAGTGCCCTGGCTGCAGTATCAAGAAGCCAAGAATTGGATAG

Protein sequence

>MsaT046546.1

MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVKEEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSIKKPRIG*