AlfalfaGEDB | MsaG046595

M. sativa ssp. caerulea / MsaG046595

KEGG: -
GO: -
PFAM: PF00096.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046595	XP_024638415.1	98.182	495	6	2	1	492	1	495	0.0	1001

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046595	sp\|Q9SCQ6\|IDD2_ARATH	58.044	317	99	5	61	349	34	344	9.92e-116	351

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046595	tr\|A0A396JWU8\|A0A396JWU8_MEDTR	98.182	495	6	2	1	492	1	495	0.0	1001

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TFs/TRs:

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Gene ID	Type	Classification
MsaG046595	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046595	MtrunA17_Chr1g0191991	98.182	495	6	2	1	492	1	495	0.0	1001
MsaG046595	MtrunA17_Chr7g0268961	53.721	430	163	12	71	480	32	445	3.73e-134	397
MsaG046595	MtrunA17_Chr2g0330171	60.841	309	89	5	49	347	34	320	1.42e-122	366
MsaG046595	MtrunA17_Chr8g0342421	61.238	307	88	6	59	348	60	352	9.57e-119	358
MsaG046595	MtrunA17_Chr1g0185121	57.225	346	107	11	61	387	40	363	4.65e-118	354
MsaG046595	MtrunA17_Chr8g0373541	73.364	214	53	1	41	250	9	222	2.08e-116	352
MsaG046595	MtrunA17_Chr4g0040571	51.752	371	101	10	58	350	36	406	5.05e-114	345
MsaG046595	MtrunA17_Chr7g0263941	55.821	335	116	5	30	357	3	312	1.15e-113	341
MsaG046595	MtrunA17_Chr4g0029521	44.396	455	187	15	59	479	36	458	4.09e-109	333
MsaG046595	MtrunA17_Chr1g0162971	51.190	336	103	6	61	346	41	365	3.68e-107	326

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046595	AT3G50700.1	58.044	317	99	5	61	349	34	344	1.01e-116	351
MsaG046595	AT5G44160.1	56.698	321	106	7	56	345	31	349	2.46e-114	345
MsaG046595	AT1G03840.1	88.304	171	19	1	56	225	35	205	1.11e-113	345
MsaG046595	AT1G03840.2	87.135	171	19	2	56	225	35	203	4.67e-110	336
MsaG046595	AT2G02080.1	41.719	477	174	14	58	480	51	477	1.28e-106	327
MsaG046595	AT2G02080.4	41.719	477	174	14	58	480	51	477	1.28e-106	327
MsaG046595	AT2G02080.5	41.719	477	174	14	58	480	51	477	1.28e-106	327
MsaG046595	AT2G02080.3	41.719	477	174	14	58	480	51	477	1.28e-106	327
MsaG046595	AT1G55110.3	74.742	194	39	2	41	224	34	227	3.33e-106	324
MsaG046595	AT1G55110.1	74.742	194	39	2	41	224	34	227	3.33e-106	324

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Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Contig1	gene	138990	142808	138990	ID=MsaG046595
Contig1	mRNA	138990	142808	138990	ID=MsaT046595.1;Parent=MsaG046595
Contig1	exon	138990	139200	138990	ID=MsaT046595.1.exon1;Parent=MsaT046595.1
Contig1	CDS	138990	139200	138990	ID=cds.MsaT046595.1;Parent=MsaT046595.1
Contig1	exon	140009	140405	140009	ID=MsaT046595.1.exon2;Parent=MsaT046595.1
Contig1	CDS	140009	140405	140009	ID=cds.MsaT046595.1;Parent=MsaT046595.1
Contig1	exon	141830	142692	141830	ID=MsaT046595.1.exon3;Parent=MsaT046595.1
Contig1	CDS	141830	142692	141830	ID=cds.MsaT046595.1;Parent=MsaT046595.1
Contig1	exon	142792	142808	142792	ID=MsaT046595.1.exon4;Parent=MsaT046595.1
Contig1	CDS	142792	142808	142792	ID=cds.MsaT046595.1;Parent=MsaT046595.1

Gene Sequence

>MsaT046595.1

ATGTCAAACATCACAAGTTGTGATAGTGGGAGTTTCTCTACAGAGAATACAAGAGAAGATGCAGTTAAACAGCAACAAACTGATCAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACAAATAATAATAATAATAGCAATGGTTCTAACACAGATTTACAACCACCTCTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTCGTATGTGAAATATGCAACAAGGGTTTTCAAAGAGACCAAAATCTTCAACTGCACCGAAGAGGACACAACTTGCCTTGGAAGCTAAAACAAAGAACTAGTGCAGAAATTAGAAAGAGGGTTTATGTTTGTCCTGAACCTTCATGTGTTCACCATAACCCTGCAAGAGCACTTGGTGATCTTACTGGTATCAAAAAGCACTTTTGTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATATGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACCCACAGAGCATTCTGTGACGCATTAGCTGAAGAGAACAACAAAGCAAACGAAGGAGTACTATCAAATTTGCAACACCAACCAATCTCAAATCTCGTTTCCTCATTACCTTTAAACCCCATTATTAACCCTCAAATTGGTGGAACTGTATCAGAATTCAACAACCATTCAGATCACAAACTTCCATTATCATCACCTCATGAACTCATGTCAGTAGTGCCACCAAAACCCTTCAACAACAACATATTCACTAGAAGCCTTTCATCATCAACTTCATCTCCTTCTCTTCAACTCAGTTCAAATAATTCACTCAACAACATCTTGGAAGAAAATGGATCACTCCATTTATCTGCTGCAACTTCACCTCACATGTCAGCCACTGCATTGCTACAGAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAATAATGCAGGTATCATGACGGATAAAACTACCGTTGCTACAAACATGATGGCGCCGCCGCAGTTTGGTGTAGTGCAACAACAAGGACATGCTTTCATGAACCACTACATGCAACAGCAACAACAACACTACAATAATAATTTCAATGCAAATGGGATAATAAATGGAGGAGGCGTTGGAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTATCGAAGATCATTGAACAAAACAATCAAACTCAAAGCATTAATAGTGTTGCTGGAGGTGGAGGAGGAGGTGCATCAAGTAATAGTAATAATGTTATGAACATTAGTGGAAGTAAGGGTGGTGGAGATGTAATGACACTGGATTTGTTGGGGATAGGAGGAGGAGGTGCACATAGTAATTTCTATGGAGGGGCAACAAGCAACATTTGA

Protein sequence

>MsaT046595.1

MSNITSCDSGSFSTENTREDAVKQQQTDQILGQFHSPHSHTSTNNNNNSNGSNTDLQPPLKKKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSAEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGVLSNLQHQPISNLVSSLPLNPIINPQIGGTVSEFNNHSDHKLPLSSPHELMSVVPPKPFNNNIFTRSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSAATSPHMSATALLQKAAQMGATVSNNNAGIMTDKTTVATNMMAPPQFGVVQQQGHAFMNHYMQQQQQHYNNNFNANGIINGGGVGMNGVDMFNAILDQSKALSKIIEQNNQTQSINSVAGGGGGGASSNSNNVMNISGSKGGGDVMTLDLLGIGGGGAHSNFYGGATSNI*