AlfalfaGEDB | MsaG046597

M. sativa ssp. caerulea / MsaG046597

KEGG: K02987 K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF08879.13

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046597	RHN80785.1	97.752	934	15	2	1	932	70	999	0.0	1892

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046597	sp\|Q9SSE9\|JMJ25_ARATH	35.393	534	269	11	380	892	412	890	1.25e-94	324
MsaG046597	sp\|Q9SSE9\|JMJ25_ARATH	38.509	161	94	2	200	355	155	315	1.32e-26	121

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046597	tr\|A0A396JX83\|A0A396JX83_MEDTR	97.752	934	15	2	1	932	70	999	0.0	1892

TFs/TRs:

Gene ID	Type	Classification
MsaG046597	TR	Jumonji

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046597	MtrunA17_Chr1g0192011	97.752	934	15	2	1	932	70	999	0.0	1892
MsaG046597	MtrunA17_Chr7g0275771	39.184	809	387	17	187	897	127	928	0.0	565
MsaG046597	MtrunA17_Chr4g0075261	37.432	732	404	14	193	896	162	867	3.21e-156	481
MsaG046597	MtrunA17_Chr1g0211711	37.802	746	374	18	200	894	343	1049	3.44e-149	468
MsaG046597	MtrunA17_Chr5g0426961	36.258	775	387	15	179	894	107	833	1.23e-140	439
MsaG046597	MtrunA17_Chr1g0183311	36.133	750	411	13	200	894	144	880	2.11e-136	430
MsaG046597	MtrunA17_Chr2g0289121	34.641	739	399	13	191	902	147	828	6.26e-132	416
MsaG046597	MtrunA17_Chr2g0281051	32.595	767	445	18	197	900	204	961	8.85e-124	399
MsaG046597	MtrunA17_Chr1g0211661	34.543	689	363	13	194	836	219	865	6.52e-119	384
MsaG046597	MtrunA17_Chr1g0147021	39.442	502	267	10	187	664	857	1345	7.08e-110	372
MsaG046597	MtrunA17_Chr1g0147021	43.386	189	89	2	747	931	1545	1719	9.23e-42	166
MsaG046597	MtrunA17_Chr5g0420361	35.250	661	347	19	280	886	158	791	1.12e-109	357
MsaG046597	MtrunA17_Chr6g0472441	31.921	661	350	15	274	882	94	706	4.26e-97	321
MsaG046597	MtrunA17_Chr4g0048531	34.875	562	310	12	387	896	722	1279	2.79e-92	318
MsaG046597	MtrunA17_Chr4g0048531	29.268	246	141	7	197	410	257	501	4.86e-24	109
MsaG046597	MtrunA17_Chr1g0211691	34.123	633	322	15	200	777	342	934	2.65e-91	311
MsaG046597	MtrunA17_Chr2g0289031	36.468	436	225	5	466	896	8	396	1.32e-84	277
MsaG046597	MtrunA17_Chr8g0378421	92.437	119	5	1	59	177	1	115	1.04e-66	218
MsaG046597	MtrunA17_Chr5g0448301	31.148	549	312	12	282	806	125	631	3.50e-66	234
MsaG046597	MtrunA17_Chr8g0361381	38.660	194	114	1	460	653	24	212	4.15e-40	147
MsaG046597	MtrunA17_Chr1g0211701	48.739	119	60	1	784	901	6	124	1.59e-35	132
MsaG046597	MtrunA17_Chr2g0289041	33.990	203	113	2	221	402	2	204	1.59e-34	131
MsaG046597	MtrunA17_Chr2g0289091	42.138	159	85	1	538	696	20	171	3.87e-30	124
MsaG046597	MtrunA17_Chr2g0289091	45.669	127	62	3	729	851	290	413	2.36e-26	113
MsaG046597	MtrunA17_Chr7g0231061	40.000	160	96	0	525	684	9	168	8.80e-29	114
MsaG046597	MtrunA17_Chr8g0364421	29.956	227	135	6	309	520	10	227	1.04e-22	97.8
MsaG046597	MtrunA17_Chr8g0361391	50.575	87	38	2	754	836	52	137	3.87e-21	91.3
MsaG046597	MtrunA17_Chr8g0340381	51.190	84	37	2	562	645	36	115	2.19e-16	78.6
MsaG046597	MtrunA17_Chr8g0364411	35.135	111	69	3	200	307	33	143	2.29e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046597	AT1G09060.4	52.812	960	381	20	2	928	19	939	0.0	950
MsaG046597	AT1G09060.3	52.812	960	381	20	2	928	19	939	0.0	950
MsaG046597	AT1G09060.2	52.812	960	381	20	2	928	5	925	0.0	949
MsaG046597	AT1G09060.1	52.812	960	381	20	2	928	5	925	0.0	949
MsaG046597	AT4G00990.1	37.913	786	426	15	170	896	50	832	2.07e-175	531
MsaG046597	AT1G11950.1	37.483	731	375	12	200	898	193	873	1.10e-162	499
MsaG046597	AT1G11950.3	37.483	731	375	12	200	898	193	873	1.10e-162	499
MsaG046597	AT4G00990.3	36.612	732	402	15	170	842	50	778	2.21e-152	469
MsaG046597	AT1G62310.1	36.278	747	394	13	173	882	182	883	1.77e-151	470
MsaG046597	AT4G00990.2	36.639	726	398	15	170	836	50	772	3.99e-151	465
MsaG046597	AT1G11950.2	36.419	659	337	12	200	826	193	801	5.49e-135	424
MsaG046597	AT3G07610.1	35.393	534	269	11	380	892	412	890	1.27e-95	324
MsaG046597	AT3G07610.1	38.509	161	94	2	200	355	155	315	1.35e-27	121
MsaG046597	AT3G07610.3	33.515	549	281	11	380	892	412	912	1.43e-91	313
MsaG046597	AT3G07610.3	38.509	161	94	2	200	355	155	315	1.13e-27	121
MsaG046597	AT4G21430.1	29.933	745	438	16	197	903	224	922	3.08e-84	291
MsaG046597	AT3G07610.2	38.328	287	148	6	380	649	412	686	7.75e-53	198
MsaG046597	AT3G07610.2	38.509	161	94	2	200	355	155	315	3.17e-27	119

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Contig1	gene	145369	152257	145369	ID=MsaG046597
Contig1	mRNA	145369	152257	145369	ID=MsaT046597.1;Parent=MsaG046597
Contig1	exon	145369	145468	145369	ID=MsaT046597.1.exon13;Parent=MsaT046597.1
Contig1	CDS	145369	145468	145369	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	145622	145692	145622	ID=MsaT046597.1.exon12;Parent=MsaT046597.1
Contig1	CDS	145622	145692	145622	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	145844	145963	145844	ID=MsaT046597.1.exon11;Parent=MsaT046597.1
Contig1	CDS	145844	145963	145844	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	146942	147027	146942	ID=MsaT046597.1.exon10;Parent=MsaT046597.1
Contig1	CDS	146942	147027	146942	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	148036	148108	148036	ID=MsaT046597.1.exon9;Parent=MsaT046597.1
Contig1	CDS	148036	148108	148036	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	148225	148629	148225	ID=MsaT046597.1.exon8;Parent=MsaT046597.1
Contig1	CDS	148225	148629	148225	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	149312	149641	149312	ID=MsaT046597.1.exon7;Parent=MsaT046597.1
Contig1	CDS	149312	149641	149312	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	149770	150409	149770	ID=MsaT046597.1.exon6;Parent=MsaT046597.1
Contig1	CDS	149770	150409	149770	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	150533	150587	150533	ID=MsaT046597.1.exon5;Parent=MsaT046597.1
Contig1	CDS	150533	150587	150533	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	150718	150850	150718	ID=MsaT046597.1.exon4;Parent=MsaT046597.1
Contig1	CDS	150718	150850	150718	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	150958	151057	150958	ID=MsaT046597.1.exon3;Parent=MsaT046597.1
Contig1	CDS	150958	151057	150958	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	151158	151297	151158	ID=MsaT046597.1.exon2;Parent=MsaT046597.1
Contig1	CDS	151158	151297	151158	ID=cds.MsaT046597.1;Parent=MsaT046597.1
Contig1	exon	151712	152257	151712	ID=MsaT046597.1.exon1;Parent=MsaT046597.1
Contig1	CDS	151712	152257	151712	ID=cds.MsaT046597.1;Parent=MsaT046597.1

Gene Sequence

>MsaT046597.1

ATGGATCAAGCAAGATCGAACAACAACATCGATGAGAATGTAGGAATTCCAGACGATTTACGTTGCAAGAGATCAGACGGGAAGCAATGGAGATGCACGGCCATGTCGATGCCAGATAAAACCGTTTGCGAGAAGCATTACATTCAAGCCAAGAAAAGAGCAGCGAATTCTGCCATGAGAGCTAATCTCAAGAAATCTAAGCCCGATTCTGATGTTAATTTGGAAAGTAAGAGTGATGATTTTGATGCTCCGCTTTCAACTGCGGTTAATAATAATAATAATAATCATCATCGTTCTTCCTCTTCCTCTGGGAAGAAGTTGTTTGATAAGGTTTCTAAGAATCAGTTTCGTTATACTCCTGAGGGTGTTCTTGGTTCTTCTTCTGGAAATAATGTTTCCAAGCTTGGTGATGGTGGTGATGTTTCGCCTGATGAGGATGCTGTTCTGTTTGAAGAGAATTGGGTCTCAAATGATTCGCAGCATGCTTCTGGTGACGATTCTGCCGGGAAAATGACAGGCAGGAGCATGGATGTTGATGTCAACACTGAATGTTCTAATGGAACATCGGATTCTTCTCAAGAAACTGGCAGGCAGACTTGCCATCAGTGTAGGAAGAATGTTAAAGATGTTAGTTGGTGCCTTAAGTGTGATAGGAGAGGATACTGTGATAGCTGCATATCAACATGGTATTCTGACATTCCATTGGATGAAATTCAGAAGATATGTCCTGCATGTCGTGGTATATGCAATTGTAAAATTTGCTTACGTAGTGATAATTCCATAAAGGTTCGGATACGTGAGATACCTGTACTGGATAAGTTACAGTATTTGCACGTGTTGCTCTCGTCAGTGCTTCCCGTGGTAAAGCAGATCCACCGAGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAGTTGAATGCAGACGAGCAGATGTGCTGCAATTTATGTAGGATACCTATCACTGATTATCATCGACGCTGCCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCGAGATCTTCGGGAAGCTACTTTACATCAGAGTGAAGAACCTCAAACTGAGCATGCAAAAACTACTGATCGAAACATATTAAGCAAGTTTCCTCTCTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTATTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTCGCAAAATTGGTAAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAACGAGTGATGCTGATGGTCCGCCAGAAACCGGATTGAATGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGTCCAACATCTGAAGAACTCAAAACTGATGGGATTGGCATGTTTAGAACACACTGGAAAACTGGTGAGCCCATTATCGTTAAGCAAGTATTTGATAGGTCATCAATTTCAAGCTGGGACCCGTTGGTCATATGGAGAGGGATTCTTGAGACAACAGATGAGAATATGAAAGATGATAACAGAATGGTTAAGGCCCTAGATTGCTTAGATGGGTCTGAGATTGATATCGAGCTTAATCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAGCTGAAGGATTGGCCTACACCTCGTGCATCTGAAGAATTTCTTTTGTACCAAAGACCTGAATTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATATATATATCTTATGGGATTACTGATGAACTTGGCAGAGGTGATTCTGTCACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATTCAAGTGAAGTAAAGCTGAAGGACTGGCAGCGGACAAAAGTTGAAATGATGCAGAAAACTTCCAAGGAATCTGAGGCGAAAGAATCTCATGGGGATCCAGATATATGTTCAAGAGCGAGTTCACCCGATTCATCCTTTTGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAAGATTCGACTATGGATCAAGGGGTTGAAGTTTATTCTAGTGCTGAAGGGAATTTGGTCAATTGTGAAATTCCATTAAGAGAAAATGGAGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTAAAAATGCATTGGAAGGAATTTGGGAAGTCAGATGATATAGTTACATGGCCTCTTTATGGTGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACTGTTCAGTTGGCCCTTGATTTCTTATCTCCTGAAAGCCTGGGAGAGGCTGTAAGATTGGCAGAGGAGGTTCGCCGTCTACCTAATGAACATGAAGCAAAACTTCAAGTTTTGGAGGTGGGGAAGATATCTCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGTGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAAATGTCTAAGCAGAGGCAGATAACTTGTGCTTGA

Protein sequence

>MsaT046597.1

MDQARSNNNIDENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKSKPDSDVNLESKSDDFDAPLSTAVNNNNNNHHRSSSSSGKKLFDKVSKNQFRYTPEGVLGSSSGNNVSKLGDGGDVSPDEDAVLFEENWVSNDSQHASGDDSAGKMTGRSMDVDVNTECSNGTSDSSQETGRQTCHQCRKNVKDVSWCLKCDRRGYCDSCISTWYSDIPLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATLHQSEEPQTEHAKTTDRNILSKFPLWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRTSDADGPPETGLNALRLCQYSQREASNDNYLYCPTSEELKTDGIGMFRTHWKTGEPIIVKQVFDRSSISSWDPLVIWRGILETTDENMKDDNRMVKALDCLDGSEIDIELNQFMKGYSEGRILENGWPQILKLKDWPTPRASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGITDELGRGDSVTKLHFNMRDMVYLLVHSSEVKLKDWQRTKVEMMQKTSKESEAKESHGDPDICSRASSPDSSFCTKINGLDLESDQKDSTMDQGVEVYSSAEGNLVNCEIPLRENGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVTWPLYGGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLALDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKQRQITCA*