AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046671


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046671 MtrunA17_Chr5g0435401 65.217 230 73 1 37 266 44 266 5.30e-100 301
MsaG046671 MtrunA17_Chr5g0435401 53.254 169 58 6 188 355 264 412 4.88e-38 140
MsaG046671 MtrunA17_Chr1g0192841 80.000 200 26 1 170 355 44 243 1.03e-99 295
MsaG046671 MtrunA17_Chr5g0445971 66.471 170 47 4 2 171 5 164 5.40e-67 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig1 gene 916894 919589 916894 ID=MsaG046671
Contig1 mRNA 916894 919589 916894 ID=MsaT046671.1;Parent=MsaG046671
Contig1 exon 916894 917057 916894 ID=MsaT046671.1.exon1;Parent=MsaT046671.1
Contig1 CDS 916894 917057 916894 ID=cds.MsaT046671.1;Parent=MsaT046671.1
Contig1 exon 917677 917752 917677 ID=MsaT046671.1.exon2;Parent=MsaT046671.1
Contig1 CDS 917677 917752 917677 ID=cds.MsaT046671.1;Parent=MsaT046671.1
Contig1 exon 917999 918158 917999 ID=MsaT046671.1.exon3;Parent=MsaT046671.1
Contig1 CDS 917999 918158 917999 ID=cds.MsaT046671.1;Parent=MsaT046671.1
Contig1 exon 918485 918595 918485 ID=MsaT046671.1.exon4;Parent=MsaT046671.1
Contig1 CDS 918485 918595 918485 ID=cds.MsaT046671.1;Parent=MsaT046671.1
Contig1 exon 918917 919155 918917 ID=MsaT046671.1.exon5;Parent=MsaT046671.1
Contig1 CDS 918917 919155 918917 ID=cds.MsaT046671.1;Parent=MsaT046671.1
Contig1 exon 919272 919589 919272 ID=MsaT046671.1.exon6;Parent=MsaT046671.1
Contig1 CDS 919272 919589 919272 ID=cds.MsaT046671.1;Parent=MsaT046671.1
Gene Sequence

>MsaT046671.1

ATGGAAGGCAACAAAACTATGGTTCCATCATCACCTTCAGATGCCAAACTCACCAATGGAATTGTGTCCAATGGGAAACAGTACTCTTCTCCTGATGACTTAGAGATAGAGACCTTCTATGTCAAACTAACTGAAGTTTTGGACTCCTCTGGGTTCAATCTCATTTTCAATGTCCGAGAGACAATCTTAGACTTGTACCTGTTTTACTTGGAAGTCACCAGAAGAGGAGGTTTTCACCAGGTTGGTCTTCAAAACAAATGGGCTGAAGTTGTCTCTGCACTCAAATTGGAAGGCAACAATGCAATGTTATCTGCTCAAGTTGAAAAGATCTATGCAACACTTCTATACAAATTTGAGAAATTGTACTTCTACAGGTTTCCTGCAACCGGCAGCGCCCAAGGTACGCGTAAAAGGAAGCAGAACTCGACTACTGGTTTATCTCAATTAATGGCTGATGAAGATAATCTGAATGTGGCAAAGGTTTCCAAGGACTACTCTAGCCAAATGACAGGAGCCGGCTGTCAAGAACCTCGGGTGCTTCTACAAGCACCCTCAAATGACAAAGAAAACAAGAAACAAGACAAAGAAAAGAAGAAACGGCGAGGTCCTCCTACCGGACAAAGTGGATATCAAATATTCCTCAAGCATGAATGTGCTCGATTAAAAGCTCAAGATCCGGACATTGATGGCAAAAAAGTCCTACGCATGGCTGTTGATGCTTGGCAGAAGATGTCTGCCACTGAAAAACAGCCATATGTGGAGGAAAGCAAGAAGATAAAGGAAAAAAAGAAGGAAGCAGTGATCATTGACAATAAACAGATGGGCACTGAAGATCTTAAGAAGGATGAAAAGAAGAGCACTCAAGATCTTAAGGAGGAAAAGAGGCCTAGTGTGTGCGGTTACGACTACTGTGCAACTTCGCAACCACTACCAAACTATTCTTCTGTCAACAATGCAGCTGTGGAGTTGGCTTTGAAAATGACTGAAAAAGCACTCAAGGATCCCTTCTTCCCAGTTGATTTGGATACTTACTGTTCGTTGGATATGTTAAATGGGAAATCCAAATGA

Protein sequence

>MsaT046671.1

MEGNKTMVPSSPSDAKLTNGIVSNGKQYSSPDDLEIETFYVKLTEVLDSSGFNLIFNVRETILDLYLFYLEVTRRGGFHQVGLQNKWAEVVSALKLEGNNAMLSAQVEKIYATLLYKFEKLYFYRFPATGSAQGTRKRKQNSTTGLSQLMADEDNLNVAKVSKDYSSQMTGAGCQEPRVLLQAPSNDKENKKQDKEKKKRRGPPTGQSGYQIFLKHECARLKAQDPDIDGKKVLRMAVDAWQKMSATEKQPYVEESKKIKEKKKEAVIIDNKQMGTEDLKKDEKKSTQDLKEEKRPSVCGYDYCATSQPLPNYSSVNNAAVELALKMTEKALKDPFFPVDLDTYCSLDMLNGKSK*