AlfalfaGEDB | MsaG046694

M. sativa ssp. caerulea / MsaG046694

KEGG: K04733
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046694	XP_003591240.1	91.913	643	36	1	1	643	1	627	0.0	1182

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046694	sp\|C0LGQ4\|MDIS2_ARATH	39.912	679	341	13	18	643	11	675	2.32e-159	476

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046694	tr\|G7IAB0\|G7IAB0_MEDTR	91.913	643	36	1	1	643	1	627	0.0	1182

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046694	MtrunA17_Chr1g0193121	91.913	643	36	1	1	643	1	627	0.0	1182
MsaG046694	MtrunA17_Chr3g0113951	61.610	646	219	12	9	642	124	752	0.0	737
MsaG046694	MtrunA17_Chr3g0105841	57.061	347	141	3	297	642	190	529	5.60e-140	419
MsaG046694	MtrunA17_Chr8g0379101	52.513	398	176	6	250	643	316	704	3.71e-134	409
MsaG046694	MtrunA17_Chr8g0379101	37.500	184	109	3	16	199	19	196	2.83e-24	108
MsaG046694	MtrunA17_Chr2g0283991	46.585	410	189	5	238	643	59	442	5.01e-127	382
MsaG046694	MtrunA17_Chr8g0386631	33.431	682	375	25	14	642	3	658	7.32e-104	329
MsaG046694	MtrunA17_Chr5g0397651	31.360	625	365	15	36	615	31	636	5.85e-94	303
MsaG046694	MtrunA17_Chr3g0123891	25.542	646	366	25	24	641	20	578	7.97e-43	163
MsaG046694	MtrunA17_Chr4g0060011	26.875	640	387	26	10	623	7	591	7.91e-41	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046694	AT4G18640.1	39.912	679	341	13	18	643	11	675	2.36e-160	476
MsaG046694	AT5G45840.2	41.867	664	345	13	13	643	10	665	1.44e-158	471
MsaG046694	AT5G45840.1	40.171	702	341	15	13	643	10	703	5.85e-154	461
MsaG046694	AT2G40270.1	48.491	464	216	12	194	643	34	488	4.44e-139	415
MsaG046694	AT2G40270.2	48.246	456	222	9	194	643	34	481	1.59e-138	413
MsaG046694	AT3G56050.2	49.561	456	213	8	200	643	48	498	4.06e-137	410
MsaG046694	AT3G56050.1	49.561	456	213	8	200	643	48	498	4.06e-137	410
MsaG046694	AT5G58540.3	50.862	348	157	5	296	643	5	338	3.20e-115	348
MsaG046694	AT5G58540.2	49.584	361	163	7	285	643	135	478	8.21e-114	350
MsaG046694	AT5G58540.1	49.584	361	163	7	285	643	138	481	8.36e-114	350

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Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Contig1	gene	1237271	1240743	1237271	ID=MsaG046694
Contig1	mRNA	1237271	1240743	1237271	ID=MsaT046694.1;Parent=MsaG046694
Contig1	exon	1237271	1237863	1237271	ID=MsaT046694.1.exon9;Parent=MsaT046694.1
Contig1	CDS	1237271	1237863	1237271	ID=cds.MsaT046694.1;Parent=MsaT046694.1
Contig1	exon	1238251	1238383	1238251	ID=MsaT046694.1.exon8;Parent=MsaT046694.1
Contig1	CDS	1238251	1238383	1238251	ID=cds.MsaT046694.1;Parent=MsaT046694.1
Contig1	exon	1238469	1238659	1238469	ID=MsaT046694.1.exon7;Parent=MsaT046694.1
Contig1	CDS	1238469	1238659	1238469	ID=cds.MsaT046694.1;Parent=MsaT046694.1
Contig1	exon	1238969	1239384	1238969	ID=MsaT046694.1.exon6;Parent=MsaT046694.1
Contig1	CDS	1238969	1239384	1238969	ID=cds.MsaT046694.1;Parent=MsaT046694.1
Contig1	exon	1239536	1239676	1239536	ID=MsaT046694.1.exon5;Parent=MsaT046694.1
Contig1	CDS	1239536	1239676	1239536	ID=cds.MsaT046694.1;Parent=MsaT046694.1
Contig1	exon	1239774	1239920	1239774	ID=MsaT046694.1.exon4;Parent=MsaT046694.1
Contig1	CDS	1239774	1239920	1239774	ID=cds.MsaT046694.1;Parent=MsaT046694.1
Contig1	exon	1240035	1240106	1240035	ID=MsaT046694.1.exon3;Parent=MsaT046694.1
Contig1	CDS	1240035	1240106	1240035	ID=cds.MsaT046694.1;Parent=MsaT046694.1
Contig1	exon	1240426	1240564	1240426	ID=MsaT046694.1.exon2;Parent=MsaT046694.1
Contig1	CDS	1240426	1240564	1240426	ID=cds.MsaT046694.1;Parent=MsaT046694.1
Contig1	exon	1240644	1240743	1240644	ID=MsaT046694.1.exon1;Parent=MsaT046694.1
Contig1	CDS	1240644	1240743	1240644	ID=cds.MsaT046694.1;Parent=MsaT046694.1

Gene Sequence

>MsaT046694.1

ATGACCAAGAACCAGAATCTTTCTGGAGCTTTGTGCTTTCTTACTGTGTGCTTCTTGTTTCTTAACTTGAGTTTTTGCTGCTATTCTTTGAATGAAGAAGGTAATAGTCTTTTGAAGTTGAAGCAGAGAATAATTAGTGATCCTTTTGGTGCTTTGTCAAATTGGGTTGATGATGAAGTTTCTGTTGACCCTTGTGATTGGTTTGGAGTTGAATGTTCAGATAGAAACGTTGTAGTCTTGAATTTGAAAGACCTTTGCCTTGAAGGAACTCTAGCACCAGAGCTTGTGAACCTTGTTCACATAAAATCTATTATTTTAAGGAACAATTCTTTCTATGGAACCATACCTGAAGAAATTGTAGCCTTGAAAGATTTGAAGATTTTGGATTTGGGATATAACAACTTCAGTGGACATCTAGATGCTGATTTTGGTCATAATATCACATCACTAGCAATTCTTTTGCTTGACAACAATGAGCTCCTTGTTAGTTTCTCTCCCAAAATCAATGAGCTGAAGATGCTTTCTGAGTATCAAGTAGATGAAAATCAGTTAACCAATGCAAATAAGATGCCATCTTGTTCTGAAAGATCCATCACATGGCATGTTCATGAAAATGAAGGTTCTAGGAGCCTGCAGGAATATCACAAACAACATCGTCGTCCTTATCAATACCGTCATAACCGTACTTCACCACTCTATAGATCTTTTCCTTCACATTCTCCAAGTCCATCATCGGATTCTCCTATTGAAAATGCTTCAGAATCTCCTAATAAAAATGCTTCTGGTTTTCCTAATCAAAATGCTGCTGATTCTCCTAATCAAAATGCTTCTCACTCTCTTCCTCCCCTATCAAAGAAGAATCAAGTTCCTATTTTTGCCGGAGTAATTATTGGTGGTGCTGTTTTTCTTGTTATTTCAAGCATTGGTATATATCTTTGTAAAACCAACAAGTTAGCTATTGTTAGACCTTGGAGTACAGGAATAAGCGGACAGCTTCAGAAAGCACTTGTCACTGGTGTGCCAAAGCTAAATAGATCAGATCTGGAAGCAGCATGTGAAGATTTTAGCAATGTAATTGGTAATTCACCAATTGGTACATTGTACAAAGGAACTTTATCTAGTGGAGTTGAAATTGCTGTAGCTTCTGTTTCTGTGACATTTTCCAAGAGTTGGACAAATACTTTAGAAGCTCAATTTAGGAAGAAGATAGAGACATTATCAAGAGTGAACCACAAGAATTTTGTCAATCTTATTGGATACTGTGAAGAAGAAGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAATGGAACACTATTTGAGCATTTACATGTAAAAGAAGGTGAGCACTTGAACTGGGGACCAAGACTTAGAATTGCAATGGGAATGGCTTACTGCCTACAATATATGCATGGATTGGACCCTCCTGTATCCCTCATTAACCTGAATTCTTCATCAGTCCATCTAACCGATGACCACGCAGCTAAAATCTCGGATTTGAGTTTCTCCAATGAAATAGATTCATCTGAAAAGAAACCTGATGGTAGAAAACACATTGACATGATGCAATCAGCAAGTCCATCAAGTAATGTTTATAACTTTGGTGTTTTATTATTCGAAATTGTTACCGGTCGAATTCCTTATTCGGTTGATAATAGCTCACATGAAAACTGGGCATCACATTATCTAAAATGGGACAAACCTCTTAAGGAAATGGTGGATCCAACTCTAGCATCTTACCAAGAAGATCAGGTGGAACAAGTTGCTGAATTGATAAGAGTTTGTGTTGATCCGGATTCGGACAAGAGACCGACGATGAAGGAAGTCAGTGAGATATTGAGAGAGATAACAAAAATGTCGCCTGAAATTGTAGTTCCAAAACTTTCTCCACTTTGGTGGGCTGAGATTGAGATTTCTTCTGCATAA

Protein sequence

>MsaT046694.1

MTKNQNLSGALCFLTVCFLFLNLSFCCYSLNEEGNSLLKLKQRIISDPFGALSNWVDDEVSVDPCDWFGVECSDRNVVVLNLKDLCLEGTLAPELVNLVHIKSIILRNNSFYGTIPEEIVALKDLKILDLGYNNFSGHLDADFGHNITSLAILLLDNNELLVSFSPKINELKMLSEYQVDENQLTNANKMPSCSERSITWHVHENEGSRSLQEYHKQHRRPYQYRHNRTSPLYRSFPSHSPSPSSDSPIENASESPNKNASGFPNQNAADSPNQNASHSLPPLSKKNQVPIFAGVIIGGAVFLVISSIGIYLCKTNKLAIVRPWSTGISGQLQKALVTGVPKLNRSDLEAACEDFSNVIGNSPIGTLYKGTLSSGVEIAVASVSVTFSKSWTNTLEAQFRKKIETLSRVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHVKEGEHLNWGPRLRIAMGMAYCLQYMHGLDPPVSLINLNSSSVHLTDDHAAKISDLSFSNEIDSSEKKPDGRKHIDMMQSASPSSNVYNFGVLLFEIVTGRIPYSVDNSSHENWASHYLKWDKPLKEMVDPTLASYQEDQVEQVAELIRVCVDPDSDKRPTMKEVSEILREITKMSPEIVVPKLSPLWWAEIEISSA*