AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046726


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046726 MtrunA17_Chr1g0193321 96.810 721 21 1 1 719 1 721 0.0 1437
MsaG046726 MtrunA17_Chr7g0271251 48.714 739 285 17 1 708 2 677 0.0 597
MsaG046726 MtrunA17_Chr1g0182791 61.333 150 54 2 395 544 254 399 1.57e-43 165
MsaG046726 MtrunA17_Chr7g0262691 55.000 160 53 5 396 542 185 338 6.61e-37 144
MsaG046726 MtrunA17_Chr3g0095391 61.654 133 39 5 425 557 276 396 1.22e-36 144
MsaG046726 MtrunA17_Chr7g0270871 50.314 159 71 3 407 561 152 306 1.21e-33 133
MsaG046726 MtrunA17_Chr5g0402031 50.336 149 60 2 402 549 59 194 7.55e-28 115
MsaG046726 MtrunA17_Chr1g0153241 65.882 85 29 0 454 538 79 163 1.79e-27 112
MsaG046726 MtrunA17_Chr7g0231461 55.435 92 40 1 432 522 268 359 6.51e-23 102
MsaG046726 MtrunA17_Chr4g0074161 55.405 74 29 1 462 531 208 281 9.76e-19 89.4
MsaG046726 MtrunA17_Chr1g0190731 52.857 70 29 1 462 527 195 264 1.39e-16 82.0
MsaG046726 MtrunA17_Chr1g0152131 47.945 73 37 1 462 533 262 334 1.63e-15 79.7
MsaG046726 MtrunA17_Chr5g0393721 35.294 119 61 3 444 561 207 310 2.27e-15 78.2
MsaG046726 MtrunA17_Chr8g0363921 50.000 64 31 1 462 524 153 216 1.42e-14 74.7
MsaG046726 MtrunA17_Chr3g0144641 45.205 73 39 1 462 533 193 265 2.31e-14 75.9
MsaG046726 MtrunA17_Chr8g0365941 42.105 95 47 3 462 548 307 401 3.88e-14 75.5
MsaG046726 MtrunA17_Chr5g0421111 46.575 73 38 1 462 533 367 439 4.28e-14 75.9
MsaG046726 MtrunA17_Chr1g0207311 36.538 104 46 3 463 561 194 282 4.94e-14 73.2
MsaG046726 MtrunA17_Chr7g0234761 51.562 64 30 1 462 524 319 382 5.07e-14 75.5
MsaG046726 MtrunA17_Chr5g0415291 38.583 127 63 5 409 524 55 177 5.10e-14 72.4
MsaG046726 MtrunA17_Chr4g0035101 45.205 73 39 1 462 533 145 217 5.75e-14 73.9
MsaG046726 MtrunA17_Chr8g0339091 51.562 64 30 1 462 524 293 356 7.77e-14 74.7
MsaG046726 MtrunA17_Chr3g0131771 50.000 64 31 1 462 524 149 212 2.90e-13 71.6
MsaG046726 MtrunA17_Chr3g0134741 36.275 102 50 3 458 559 227 313 4.40e-13 70.9
MsaG046726 MtrunA17_Chr8g0385911 40.000 80 47 1 449 527 134 213 8.34e-13 70.1
MsaG046726 MtrunA17_Chr1g0207301 36.047 86 40 2 476 561 304 374 2.19e-12 69.3
MsaG046726 MtrunA17_Chr7g0258161 43.056 72 40 1 463 533 176 247 2.72e-12 68.9
MsaG046726 MtrunA17_Chr1g0152651 45.455 66 36 0 458 523 272 337 3.13e-12 68.9
MsaG046726 MtrunA17_Chr1g0174161 41.429 70 40 1 463 531 163 232 1.62e-11 66.2
MsaG046726 MtrunA17_Chr1g0184841 50.000 74 33 1 462 531 122 195 6.81e-11 63.9
MsaG046726 MtrunA17_Chr6g0484271 45.312 64 34 1 462 524 157 220 7.07e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046726 AT1G09530.3 35.703 619 221 24 1 595 1 466 1.58e-71 242
MsaG046726 AT1G09530.2 35.703 619 221 24 1 595 1 466 1.58e-71 242
MsaG046726 AT1G09530.5 35.703 619 221 24 1 595 1 466 1.58e-71 242
MsaG046726 AT1G09530.1 35.703 619 221 24 1 595 1 466 1.58e-71 242
MsaG046726 AT1G09530.4 35.703 619 221 24 1 595 1 466 1.58e-71 242
MsaG046726 AT1G09530.6 35.703 619 221 24 1 595 1 466 1.58e-71 242
MsaG046726 AT2G46970.2 46.193 197 78 7 395 576 127 310 1.40e-34 136
MsaG046726 AT2G20180.7 47.458 177 72 5 399 572 153 311 1.48e-34 137
MsaG046726 AT2G20180.1 47.458 177 72 5 399 572 153 311 1.48e-34 137
MsaG046726 AT2G20180.5 47.458 177 72 5 399 572 153 311 1.48e-34 137
MsaG046726 AT2G46970.1 46.193 197 78 7 395 576 158 341 2.00e-34 136
MsaG046726 AT2G46970.3 46.193 197 78 7 395 576 136 319 2.87e-34 135
MsaG046726 AT2G20180.4 47.458 177 72 5 399 572 224 382 6.78e-34 136
MsaG046726 AT2G20180.6 47.458 177 72 5 399 572 224 382 6.78e-34 136
MsaG046726 AT2G20180.2 47.458 177 72 5 399 572 224 382 6.78e-34 136
MsaG046726 AT2G20180.3 47.458 177 72 5 399 572 224 382 6.78e-34 136
MsaG046726 AT2G20180.8 52.381 126 47 3 399 521 224 339 2.25e-29 120
MsaG046726 AT4G28800.1 43.827 162 67 5 392 548 193 335 1.87e-27 116
MsaG046726 AT4G28790.1 43.709 151 65 4 421 564 244 381 1.04e-26 114
MsaG046726 AT4G36930.1 58.772 114 41 2 432 541 161 272 1.41e-26 112
MsaG046726 AT4G00050.2 59.140 93 34 2 432 523 79 168 2.87e-26 110
MsaG046726 AT4G00050.3 59.140 93 34 2 432 523 181 270 1.24e-25 110
MsaG046726 AT4G00050.1 59.140 93 34 2 432 523 181 270 1.44e-25 110
MsaG046726 AT5G67110.1 54.639 97 44 0 440 536 67 163 1.86e-24 102
MsaG046726 AT3G59060.1 47.552 143 60 3 425 555 212 351 3.14e-23 103
MsaG046726 AT3G59060.3 47.552 143 60 3 425 555 212 351 3.57e-23 103
MsaG046726 AT3G59060.2 47.552 143 60 3 425 555 212 351 3.57e-23 103
MsaG046726 AT3G59060.4 47.552 143 60 3 425 555 212 351 3.57e-23 103
MsaG046726 AT4G28800.2 41.358 162 65 6 392 548 205 341 5.34e-23 103
MsaG046726 AT3G62090.1 46.341 123 48 2 460 573 165 278 5.57e-23 101
MsaG046726 AT3G62090.2 46.341 123 48 2 460 573 182 295 1.08e-22 100
MsaG046726 AT4G28815.2 52.222 90 40 2 456 542 64 153 3.26e-22 96.7
MsaG046726 AT4G28815.1 48.958 96 46 2 450 542 134 229 1.90e-21 96.3
MsaG046726 AT2G43010.2 66.667 81 24 1 445 522 233 313 1.12e-20 95.9
MsaG046726 AT2G43010.1 66.667 81 24 1 445 522 233 313 1.20e-20 95.9
MsaG046726 AT2G43010.4 66.667 81 24 1 445 522 233 313 1.31e-20 95.5
MsaG046726 AT2G43010.3 66.667 81 24 1 445 522 240 320 1.39e-20 95.9
MsaG046726 AT2G43010.5 66.667 81 24 1 445 522 275 355 2.18e-20 95.5
MsaG046726 AT4G28790.2 48.000 100 40 2 421 520 244 331 8.27e-20 92.0
MsaG046726 AT2G24260.2 60.317 63 25 0 462 524 37 99 1.74e-19 89.0
MsaG046726 AT5G58010.1 53.947 76 31 1 462 533 101 176 3.56e-19 89.4
MsaG046726 AT2G24260.1 60.317 63 25 0 462 524 140 202 7.20e-19 89.4
MsaG046726 AT4G30980.1 58.730 63 26 0 462 524 132 194 1.33e-18 87.8
MsaG046726 AT5G61270.2 48.246 114 48 3 423 536 45 147 2.99e-18 86.3
MsaG046726 AT5G61270.3 48.246 114 48 3 423 536 45 147 2.99e-18 86.3
MsaG046726 AT4G30980.2 58.730 63 26 0 462 524 180 242 3.32e-18 87.4
MsaG046726 AT5G61270.1 48.246 114 48 3 423 536 133 235 5.49e-18 87.0
MsaG046726 AT4G28811.1 41.916 167 72 5 392 545 292 446 9.51e-17 84.7
MsaG046726 AT1G68920.1 31.795 195 103 6 357 533 195 377 2.52e-15 79.7
MsaG046726 AT1G68920.4 31.795 195 103 6 357 533 195 377 2.52e-15 79.7
MsaG046726 AT1G68920.2 31.795 195 103 6 357 533 195 377 2.52e-15 79.7
MsaG046726 AT1G68920.3 49.315 73 36 1 462 533 304 376 2.82e-15 79.7
MsaG046726 AT5G50915.3 53.125 64 29 1 462 524 138 201 3.60e-15 76.6
MsaG046726 AT5G50915.4 53.125 64 29 1 462 524 138 201 3.60e-15 76.6
MsaG046726 AT1G10120.2 47.945 73 37 1 462 533 208 280 4.40e-15 78.2
MsaG046726 AT1G10120.1 47.945 73 37 1 462 533 208 280 4.40e-15 78.2
MsaG046726 AT5G50915.1 53.125 64 29 1 462 524 138 201 5.24e-15 76.6
MsaG046726 AT5G50915.2 53.125 64 29 1 462 524 138 201 5.24e-15 76.6
MsaG046726 AT1G02340.2 47.727 88 44 2 474 559 134 221 9.20e-15 75.9
MsaG046726 AT1G02340.1 47.727 88 44 2 474 559 141 228 1.01e-14 75.9
MsaG046726 AT2G18300.1 45.333 75 40 1 462 535 187 261 2.00e-14 75.9
MsaG046726 AT2G18300.2 45.333 75 40 1 462 535 187 261 2.15e-14 75.5
MsaG046726 AT3G23690.1 44.156 77 42 1 462 537 193 269 2.28e-14 75.9
MsaG046726 AT4G36540.2 45.205 73 39 1 462 533 143 215 2.76e-14 74.7
MsaG046726 AT4G36540.1 45.205 73 39 1 462 533 143 215 2.78e-14 74.7
MsaG046726 AT2G18300.3 44.156 77 42 1 462 537 187 263 2.80e-14 75.5
MsaG046726 AT5G62610.2 51.562 64 30 1 462 524 155 218 4.07e-14 73.9
MsaG046726 AT5G62610.1 51.562 64 30 1 462 524 155 218 4.07e-14 73.9
MsaG046726 AT1G59640.1 50.000 64 31 1 462 524 138 201 5.35e-14 73.2
MsaG046726 AT2G14760.1 38.462 104 49 3 458 561 235 323 5.63e-14 74.3
MsaG046726 AT3G07340.2 51.562 64 30 1 462 524 260 323 6.30e-14 75.1
MsaG046726 AT2G14760.3 37.931 116 51 4 452 561 236 336 6.93e-14 73.9
MsaG046726 AT3G07340.1 51.562 64 30 1 462 524 260 323 7.48e-14 75.1
MsaG046726 AT5G48560.2 51.562 64 30 1 462 524 303 366 1.00e-13 74.7
MsaG046726 AT5G48560.1 51.562 64 30 1 462 524 303 366 1.15e-13 74.7
MsaG046726 AT4G33880.1 40.000 100 45 3 458 557 264 348 1.26e-13 73.6
MsaG046726 AT4G34530.1 41.667 72 41 1 462 532 174 245 1.75e-13 72.8
MsaG046726 AT5G43175.1 41.250 80 39 2 451 530 130 201 2.74e-13 70.5
MsaG046726 AT1G26260.3 48.438 64 32 1 462 524 174 237 2.78e-13 72.4
MsaG046726 AT1G26260.5 48.438 64 32 1 462 524 203 266 2.83e-13 72.4
MsaG046726 AT2G42300.4 43.836 73 40 1 462 533 187 259 3.00e-13 71.2
MsaG046726 AT1G26260.4 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
MsaG046726 AT1G26260.1 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
MsaG046726 AT1G26260.6 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
MsaG046726 AT1G26260.2 48.438 64 32 1 462 524 225 288 3.46e-13 72.4
MsaG046726 AT1G59640.2 50.000 64 31 1 462 524 138 201 3.62e-13 72.0
MsaG046726 AT2G42300.1 43.836 73 40 1 462 533 187 259 5.41e-13 71.2
MsaG046726 AT1G27740.1 36.066 122 58 5 440 561 152 253 5.45e-13 70.1
MsaG046726 AT3G57800.2 42.466 73 41 1 462 533 206 278 1.74e-12 70.1
MsaG046726 AT1G18400.2 46.875 64 33 1 462 524 147 210 2.25e-12 68.2
MsaG046726 AT1G18400.1 46.875 64 33 1 462 524 147 210 2.61e-12 68.2
MsaG046726 AT1G25330.1 45.312 64 34 1 462 524 106 169 4.03e-12 67.0
MsaG046726 AT1G73830.2 43.750 64 35 1 462 524 149 212 1.07e-11 66.2
MsaG046726 AT1G73830.1 43.750 64 35 1 462 524 149 212 1.21e-11 66.2

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig1 gene 1573129 1576263 1573129 ID=MsaG046726
Contig1 mRNA 1573129 1576263 1573129 ID=MsaT046726.1;Parent=MsaG046726
Contig1 exon 1573129 1573214 1573129 ID=MsaT046726.1.exon1;Parent=MsaT046726.1
Contig1 CDS 1573129 1573214 1573129 ID=cds.MsaT046726.1;Parent=MsaT046726.1
Contig1 exon 1573354 1574590 1573354 ID=MsaT046726.1.exon2;Parent=MsaT046726.1
Contig1 CDS 1573354 1574590 1573354 ID=cds.MsaT046726.1;Parent=MsaT046726.1
Contig1 exon 1574675 1574779 1574675 ID=MsaT046726.1.exon3;Parent=MsaT046726.1
Contig1 CDS 1574675 1574779 1574675 ID=cds.MsaT046726.1;Parent=MsaT046726.1
Contig1 exon 1574891 1574956 1574891 ID=MsaT046726.1.exon4;Parent=MsaT046726.1
Contig1 CDS 1574891 1574956 1574891 ID=cds.MsaT046726.1;Parent=MsaT046726.1
Contig1 exon 1575356 1575421 1575356 ID=MsaT046726.1.exon5;Parent=MsaT046726.1
Contig1 CDS 1575356 1575421 1575356 ID=cds.MsaT046726.1;Parent=MsaT046726.1
Contig1 exon 1575510 1576028 1575510 ID=MsaT046726.1.exon6;Parent=MsaT046726.1
Contig1 CDS 1575510 1576028 1575510 ID=cds.MsaT046726.1;Parent=MsaT046726.1
Contig1 exon 1576183 1576263 1576183 ID=MsaT046726.1.exon7;Parent=MsaT046726.1
Contig1 CDS 1576183 1576263 1576183 ID=cds.MsaT046726.1;Parent=MsaT046726.1
Gene Sequence

>MsaT046726.1

ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAAGCTTGATAATGAGACTAACGGCGCAAGTGTAGCGGATCAACCTTCGTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTGCCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGGAGGATTTAGTAATAACAATCCAAAGATAGGAAAGTTTGGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACACGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAACGACCTTCCTGCCTCGAATAGTTTTACTCTATTGGATAAAAGAAGTAATGGGAATCAGATATTTAGGGACTCTCATAAAAATTCTGCAGAACCGATGAATGTTTCTAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCGGTCAGTTATATCCGCCATCATCGAATCAATGTCAAACAACATCTGTAACTGTTAGATCTAGGGCATCAGATATAACTGAAAATAATAATGTTAGCAGTGGTAACCAGGACGTGCCTTATGGGGATATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAAGCGCAGAAGCAAGATCCTATAATGCCTGGCAATGGTTCCAATGTAATGAATTTTTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATAGGCTTGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATGTTATAGGAGTTAAGAATAAAGGCGCTGCTTCGACTAGCAGCAATCCTCCTGATTCAGCTCTTGTTAATCCAAGCGGTGAGTGTTCAAAGGAACCGGAAATGCGCTGTCATAAGGTGGTAGAGCCATCCAAGGCTGATTTGAAACCTTTGCAGCCGAAATTGCTTGAACCAAATGCTGTAGCTACTAAACAATCGAAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACCTTCCATTCAAGTTCTTGGTGACAATGGCGCTAAAGGACACACAGCTGCTGAAAAAGGCATGGAGGTGGCAGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTGGGAGTTAAAAAGGGAGCGGCTGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTGCAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCCGCATTTTCACAGATGGGCATCGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGGCCGTCTAGATTTCCAATGATTCAAGTACCTCAGATGCAAGGAAATCATATGCCCGTTGCGCATATGCCTGGACCCTCTGCTATGCATGGAATGGCCAGATCGAATACTCAAGGGTTTGGACTTCCGGGACAGGGAATTTCCATGCCAATGCCGCATGGTCCGGCATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCCGCTCCGGGTCCGTCTGTGTATGGATCCACAGGACATGTTGAAGCTGTGAATCCGGCTTCAGCGTGTGGCTCAAAAGATCGAAGGCCAGATGTGGACTCACAAATTAAGCAAAACACTGCTGGTCGTGACTCTACAAGCCAGATCCCTAACCAGTCAACTTTGGTGCATAATGGTGGCCATGCTTCAGTGGCTGATGACAGTGAAGCTGCTAATCCAGGCAATACAAATTTGTGA

Protein sequence

>MsaT046726.1

MPLYELYRLAREKLDNETNGASVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGGGFSNNNPKIGKFGDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNSFTLLDKRSNGNQIFRDSHKNSAEPMNVSKGSSAEQVVETARHKASAGQLYPPSSNQCQTTSVTVRSRASDITENNNVSSGNQDVPYGDITRIPSSSSDFSSLKAQKQDPIMPGNGSNVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDVIGVKNKGAASTSSNPPDSALVNPSGECSKEPEMRCHKVVEPSKADLKPLQPKLLEPNAVATKQSKPACKENGIKNDQPSIQVLGDNGAKGHTAAEKGMEVAVASSSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGMQHMHAPHMAAFSQMGIGMHMGLGMGYGMGMPDMNGGPSRFPMIQVPQMQGNHMPVAHMPGPSAMHGMARSNTQGFGLPGQGISMPMPHGPAFPFSGGPLMNSSAPGPSVYGSTGHVEAVNPASACGSKDRRPDVDSQIKQNTAGRDSTSQIPNQSTLVHNGGHASVADDSEAANPGNTNL*