AlfalfaGEDB | MsaG046751

M. sativa ssp. caerulea / MsaG046751

KEGG: K08065 K14799
GO: GO:0000976 GO:0000981 GO:0001067 GO:0001654 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0007423 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010720 GO:0010941 GO:0016070 GO:0016602 GO:0018130 GO:0019216 GO:0019218 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0022008 GO:0022603 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043408 GO:0043410 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0044877 GO:0045540 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045676 GO:0045678 GO:0045893 GO:0045935 GO:0045937 GO:0046483 GO:0046532 GO:0046534 GO:0046890 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048699 GO:0048731 GO:0048749 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050810 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0060548 GO:0062012 GO:0065007 GO:0070013 GO:0070491 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090181 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0106118 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1990823 GO:1990830 GO:1990837 GO:2000026 GO:2000027 GO:2000112 GO:2001141
PFAM: PF00808.26

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046751	AES91843.2	89.815	108	7	2	43	147	23	129	2.30e-62	197

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046751	sp\|O82248\|NFYB5_ARATH	72.277	101	24	2	37	134	46	145	4.99e-48	155

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046751	tr\|G7JKC3\|G7JKC3_MEDTR	89.815	108	7	2	43	147	23	129	1.10e-62	197

TFs/TRs:

Gene ID	Type	Classification
MsaG046751	TF	NF-YB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046751	MtrunA17_Chr2g0296321	81.308	107	14	3	43	146	67	170	1.04e-54	172
MsaG046751	MtrunA17_Chr4g0067091	90.217	92	5	2	43	131	23	113	7.71e-54	169
MsaG046751	MtrunA17_Chr1g0195851	77.895	95	17	2	43	134	37	130	7.13e-50	158
MsaG046751	MtrunA17_Chr2g0290491	60.185	108	39	2	43	147	18	124	4.10e-41	135
MsaG046751	MtrunA17_Chr4g0076321	66.316	95	28	2	43	134	20	113	4.88e-41	134
MsaG046751	MtrunA17_Chr1g0191981	68.085	94	26	2	44	134	6	98	9.72e-41	132
MsaG046751	MtrunA17_Chr3g0102351	63.542	96	31	2	43	135	28	122	8.22e-40	132
MsaG046751	MtrunA17_Chr1g0185911	67.778	90	25	2	43	129	30	118	1.27e-39	131
MsaG046751	MtrunA17_Chr5g0446491	61.386	101	35	2	38	135	19	118	2.79e-39	130
MsaG046751	MtrunA17_Chr7g0263601	64.130	92	29	2	43	131	27	117	6.93e-39	129
MsaG046751	MtrunA17_Chr8g0382931	56.604	106	42	2	37	139	23	127	1.34e-38	129
MsaG046751	MtrunA17_Chr8g0384451	62.500	96	32	2	43	135	41	135	2.37e-38	129
MsaG046751	MtrunA17_Chr4g0076381	56.075	107	43	2	43	146	59	164	7.27e-37	126
MsaG046751	MtrunA17_Chr1g0165041	59.574	94	34	2	43	133	7	99	2.87e-33	115
MsaG046751	MtrunA17_Chr5g0446601	43.182	88	46	2	45	129	27	113	4.04e-18	76.6
MsaG046751	MtrunA17_Chr1g0159271	41.379	87	47	2	56	139	1	86	1.46e-15	68.2
MsaG046751	MtrunA17_Chr1g0158951	45.070	71	38	1	63	133	13	82	7.21e-15	66.2
MsaG046751	MtrunA17_Chr2g0307551	30.612	98	64	2	34	128	3	99	1.31e-13	64.3
MsaG046751	MtrunA17_Chr4g0062271	28.571	98	66	2	34	128	3	99	4.19e-12	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046751	AT2G47810.1	72.277	101	24	2	37	134	46	145	5.07e-49	155
MsaG046751	AT1G09030.1	69.792	96	25	2	43	135	4	98	4.13e-43	139
MsaG046751	AT5G47640.1	66.337	101	30	2	38	135	23	122	2.08e-41	137
MsaG046751	AT4G14540.1	63.366	101	33	2	40	137	19	118	3.76e-41	135
MsaG046751	AT3G53340.3	60.952	105	37	2	37	138	24	127	8.12e-41	134
MsaG046751	AT3G53340.2	60.952	105	37	2	37	138	24	127	8.12e-41	134
MsaG046751	AT3G53340.5	63.265	98	32	2	37	131	24	120	1.20e-39	132
MsaG046751	AT3G53340.1	63.265	98	32	2	37	131	24	120	1.20e-39	132
MsaG046751	AT2G38880.3	67.391	92	26	2	43	131	22	112	1.27e-39	130
MsaG046751	AT2G38880.2	67.391	92	26	2	43	131	22	112	1.72e-39	130
MsaG046751	AT2G38880.1	67.391	92	26	2	43	131	22	112	1.72e-39	130
MsaG046751	AT2G38880.5	67.391	92	26	2	43	131	22	112	1.72e-39	130
MsaG046751	AT3G53340.4	62.887	97	32	2	37	130	24	119	6.81e-39	128
MsaG046751	AT2G37060.2	62.245	98	33	2	37	131	25	121	8.80e-39	129
MsaG046751	AT2G37060.3	62.245	98	33	2	37	131	25	121	8.80e-39	129
MsaG046751	AT2G37060.1	62.245	98	33	2	37	131	25	121	8.80e-39	129
MsaG046751	AT2G38880.4	65.934	91	27	2	43	130	22	111	2.85e-38	126
MsaG046751	AT2G38880.7	66.667	90	26	2	43	129	22	110	3.39e-38	127
MsaG046751	AT2G13570.1	63.542	96	31	2	43	135	37	131	6.59e-38	128
MsaG046751	AT2G38880.11	65.934	91	27	2	43	130	22	111	7.94e-38	127
MsaG046751	AT2G38880.8	65.934	91	27	2	43	130	22	111	7.94e-38	127
MsaG046751	AT2G38880.9	65.934	91	27	2	43	130	22	111	1.07e-37	126
MsaG046751	AT2G38880.10	65.934	91	27	2	43	130	22	111	1.07e-37	126
MsaG046751	AT2G38880.6	65.934	91	27	2	43	130	22	111	1.07e-37	126
MsaG046751	AT5G47670.2	61.053	95	33	2	43	134	30	123	5.98e-36	123
MsaG046751	AT5G47670.1	61.053	95	33	2	43	134	59	152	1.15e-35	123
MsaG046751	AT5G47670.3	61.053	95	33	2	43	134	59	152	1.15e-35	123
MsaG046751	AT1G21970.1	53.684	95	40	2	43	134	60	153	1.09e-30	110
MsaG046751	AT5G23090.4	28.037	107	71	3	34	135	3	108	7.41e-12	60.1

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Contig1	gene	1859931	1863365	1859931	ID=MsaG046751
Contig1	mRNA	1859931	1863365	1859931	ID=MsaT046751.1;Parent=MsaG046751
Contig1	exon	1859931	1860311	1859931	ID=MsaT046751.1.exon3;Parent=MsaT046751.1
Contig1	CDS	1859931	1860311	1859931	ID=cds.MsaT046751.1;Parent=MsaT046751.1
Contig1	exon	1862740	1862794	1862740	ID=MsaT046751.1.exon2;Parent=MsaT046751.1
Contig1	CDS	1862740	1862794	1862740	ID=cds.MsaT046751.1;Parent=MsaT046751.1
Contig1	exon	1863358	1863365	1863358	ID=MsaT046751.1.exon1;Parent=MsaT046751.1
Contig1	CDS	1863358	1863365	1863358	ID=cds.MsaT046751.1;Parent=MsaT046751.1

Gene Sequence

>MsaT046751.1

ATGAAGAGGGAGGCTGCTGGTCGCGACAGTGAGAGAGATGAGAATGAAGAGGGAGACTGTGATGAACCAAAACGATGGATAACAACGTTGGAGGAAGTTCCTTTAATAACGTTGAAAACGGAGGCACAAGATAGGTTGTTACCAATTGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCCCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTTATAAGCTTTGTGACAAGTGACGCATCAGAGAAATGCAGGAAGGAAAGGAGAAAGACAGTGAATGGTGACGATGATATATGTTGGGCTTTGGGGACACTTGGTTTTGATGATTATGCTGAACAAATAAGAAAGTATTTGCATAGATATAGAGAATTAGAGGTAGAAAGAACACCAACTACTACTAATAATATTCAAAATAGAGGAAATTAA

Protein sequence

>MsaT046751.1

MKREAAGRDSERDENEEGDCDEPKRWITTLEEVPLITLKTEAQDRLLPIANVGRIMKQILPQNAKIPKETMQECVSEFISFVTSDASEKCRKERRKTVNGDDDICWALGTLGFDDYAEQIRKYLHRYRELEVERTPTTTNNIQNRGN*