Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046760 | KEH43166.1 | 87.387 | 222 | 23 | 4 | 1 | 217 | 1 | 222 | 2.27e-115 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046760 | tr|A0A072VNE8|A0A072VNE8_MEDTR | 87.387 | 222 | 23 | 4 | 1 | 217 | 1 | 222 | 1.09e-115 | 341 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG046760 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046760 | MtrunA17_Chr1g0193731 | 87.387 | 222 | 23 | 4 | 1 | 217 | 1 | 222 | 2.09e-119 | 341 |
| MsaG046760 | MtrunA17_Chr7g0214511 | 46.897 | 290 | 63 | 11 | 7 | 218 | 11 | 287 | 3.84e-61 | 192 |
| MsaG046760 | MtrunA17_Chr1g0180581 | 47.321 | 224 | 50 | 9 | 15 | 212 | 10 | 191 | 8.64e-46 | 151 |
| MsaG046760 | MtrunA17_Chr1g0169521 | 37.037 | 243 | 78 | 8 | 41 | 218 | 84 | 316 | 1.52e-29 | 112 |
| MsaG046760 | MtrunA17_Chr1g0174001 | 39.474 | 152 | 45 | 5 | 109 | 218 | 49 | 195 | 1.43e-20 | 85.5 |
| MsaG046760 | MtrunA17_Chr1g0172861 | 31.481 | 216 | 59 | 9 | 73 | 218 | 82 | 278 | 1.40e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Contig1 | gene | 1914209 | 1914865 | 1914209 | ID=MsaG046760 |
| Contig1 | mRNA | 1914209 | 1914865 | 1914209 | ID=MsaT046760.1;Parent=MsaG046760 |
| Contig1 | exon | 1914209 | 1914865 | 1914209 | ID=MsaT046760.1.exon1;Parent=MsaT046760.1 |
| Contig1 | CDS | 1914209 | 1914865 | 1914209 | ID=cds.MsaT046760.1;Parent=MsaT046760.1 |
| Gene Sequence |
| Protein sequence |
