AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046766

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046766 MtrunA17_Chr1g0193801 97.423 388 9 1 1 387 1 388 0.0 788
MsaG046766 MtrunA17_Chr7g0270891 62.755 392 88 16 1 368 1 358 1.39e-149 427
MsaG046766 MtrunA17_Chr1g0193371 47.512 402 158 12 1 385 1 366 3.70e-96 291
MsaG046766 MtrunA17_Chr4g0058631 84.733 131 20 0 1 131 1 131 5.31e-82 254
MsaG046766 MtrunA17_Chr7g0271241 84.173 139 22 0 1 139 1 139 1.04e-76 242
MsaG046766 MtrunA17_Chr3g0117091 71.523 151 40 1 1 151 1 148 9.32e-74 233
MsaG046766 MtrunA17_Chr1g0211161 78.740 127 27 0 3 129 4 130 1.83e-72 226
MsaG046766 MtrunA17_Chr8g0342521 75.610 123 30 0 1 123 1 123 4.81e-67 216
MsaG046766 MtrunA17_Chr2g0330041 69.925 133 40 0 1 133 1 133 2.80e-66 215
MsaG046766 MtrunA17_Chr8g0342541 74.797 123 31 0 1 123 1 123 3.24e-66 214
MsaG046766 MtrunA17_Chr2g0309911 69.231 130 39 1 1 130 1 129 1.30e-64 208
MsaG046766 MtrunA17_Chr3g0115821 64.394 132 47 0 1 132 1 132 2.44e-61 201
MsaG046766 MtrunA17_Chr4g0039971 67.188 128 42 0 1 128 2 129 5.09e-61 200
MsaG046766 MtrunA17_Chr6g0453471 67.969 128 41 0 1 128 1 128 6.38e-61 200
MsaG046766 MtrunA17_Chr8g0387421 69.492 118 36 0 1 118 1 118 7.45e-61 199
MsaG046766 MtrunA17_Chr8g0385321 65.152 132 46 0 1 132 1 132 1.31e-60 198
MsaG046766 MtrunA17_Chr4g0042671 67.969 128 41 0 1 128 1 128 1.78e-60 201
MsaG046766 MtrunA17_Chr7g0217741 67.176 131 43 0 1 131 1 131 1.97e-60 197
MsaG046766 MtrunA17_Chr8g0342481 75.214 117 28 1 1 116 1 117 1.97e-60 200
MsaG046766 MtrunA17_Chr4g0037141 62.121 132 50 0 1 132 1 132 6.02e-60 195
MsaG046766 MtrunA17_Chr5g0397231 73.636 110 29 0 1 110 1 110 2.05e-59 196
MsaG046766 MtrunA17_Chr3g0131121 61.832 131 50 0 1 131 1 131 4.36e-58 191
MsaG046766 MtrunA17_Chr5g0410961 62.595 131 49 0 1 131 1 131 5.48e-58 192
MsaG046766 MtrunA17_Chr5g0395281 68.333 120 38 0 12 131 12 131 7.93e-58 191
MsaG046766 MtrunA17_Chr2g0281071 65.116 129 44 1 1 128 1 129 1.27e-57 191
MsaG046766 MtrunA17_Chr3g0110351 65.385 130 45 0 1 130 1 130 3.01e-57 189
MsaG046766 MtrunA17_Chr1g0203411 67.797 118 38 0 1 118 1 118 4.66e-57 188
MsaG046766 MtrunA17_Chr6g0452271 59.848 132 53 0 1 132 1 132 4.88e-57 189
MsaG046766 MtrunA17_Chr8g0349261 66.667 132 42 2 1 130 1 132 5.32e-57 188
MsaG046766 MtrunA17_Chr5g0434571 64.615 130 46 0 1 130 37 166 5.41e-57 190
MsaG046766 MtrunA17_Chr4g0048511 64.341 129 45 1 1 128 1 129 5.95e-57 190
MsaG046766 MtrunA17_Chr3g0088461 76.147 109 26 0 9 117 19 127 6.07e-57 189
MsaG046766 MtrunA17_Chr5g0435101 62.400 125 47 0 3 127 2 126 8.18e-57 185
MsaG046766 MtrunA17_Chr3g0103281 64.394 132 47 0 1 132 1 132 1.11e-56 188
MsaG046766 MtrunA17_Chr2g0323411 65.625 128 44 0 1 128 1 128 1.29e-56 188
MsaG046766 MtrunA17_Chr4g0057031 62.595 131 49 0 1 131 1 131 1.50e-56 186
MsaG046766 MtrunA17_Chr4g0032401 75.701 107 26 0 11 117 16 122 7.05e-56 186
MsaG046766 MtrunA17_Chr2g0328771 74.528 106 27 0 12 117 20 125 1.55e-55 185
MsaG046766 MtrunA17_Chr7g0228891 44.681 235 111 5 1 235 1 216 1.79e-55 183
MsaG046766 MtrunA17_Chr7g0274581 64.407 118 42 0 1 118 1 118 4.80e-54 177
MsaG046766 MtrunA17_Chr7g0261281 51.724 174 63 2 1 174 1 153 1.28e-53 179
MsaG046766 MtrunA17_Chr4g0044421 61.905 126 48 0 1 126 1 126 3.22e-53 175
MsaG046766 MtrunA17_Chr1g0203441 69.748 119 35 1 9 127 10 127 1.63e-52 176
MsaG046766 MtrunA17_Chr1g0187761 66.102 118 40 0 1 118 1 118 6.49e-52 174
MsaG046766 MtrunA17_Chr3g0121241 62.097 124 47 0 6 129 36 159 1.37e-51 174
MsaG046766 MtrunA17_Chr1g0167661 65.517 116 40 0 1 116 1 116 3.29e-51 172
MsaG046766 MtrunA17_Chr6g0470971 68.644 118 36 1 9 125 11 128 3.62e-51 172
MsaG046766 MtrunA17_Chr5g0417821 63.866 119 43 0 12 130 7 125 8.60e-51 172
MsaG046766 MtrunA17_Chr1g0167691 64.655 116 41 0 1 116 1 116 1.30e-50 170
MsaG046766 MtrunA17_Chr4g0022931 52.778 144 68 0 5 148 6 149 3.28e-49 167
MsaG046766 MtrunA17_Chr2g0311221 65.138 109 38 0 2 110 4 112 4.23e-49 169
MsaG046766 MtrunA17_Chr2g0323351 62.931 116 43 0 1 116 1 116 5.52e-49 166
MsaG046766 MtrunA17_Chr8g0342511 79.310 87 18 0 1 87 1 87 9.69e-49 160
MsaG046766 MtrunA17_Chr8g0342531 78.652 89 19 0 1 89 1 89 1.61e-48 162
MsaG046766 MtrunA17_Chr8g0346561 60.169 118 47 0 1 118 1 118 5.71e-48 165
MsaG046766 MtrunA17_Chr4g0070611 59.829 117 47 0 1 117 1 117 7.78e-48 164
MsaG046766 MtrunA17_Chr4g0022901 63.964 111 40 0 5 115 6 116 9.70e-48 163
MsaG046766 MtrunA17_Chr4g0068061 63.793 116 42 0 1 116 1 116 1.27e-47 165
MsaG046766 MtrunA17_Chr1g0151941 46.707 167 82 4 1 166 1 161 1.83e-47 162
MsaG046766 MtrunA17_Chr4g0070641 59.829 117 47 0 1 117 1 117 3.02e-47 159
MsaG046766 MtrunA17_Chr7g0275911 58.974 117 48 0 1 117 1 117 7.61e-47 160
MsaG046766 MtrunA17_Chr1g0152011 60.833 120 46 1 1 119 1 120 3.07e-46 161
MsaG046766 MtrunA17_Chr1g0194951 62.931 116 43 0 1 116 1 116 1.13e-45 160
MsaG046766 MtrunA17_Chr4g0022911 58.621 116 47 1 1 115 1 116 1.33e-45 158
MsaG046766 MtrunA17_Chr4g0028311 61.538 117 44 1 1 116 1 117 1.38e-45 159
MsaG046766 MtrunA17_Chr3g0135311 58.974 117 47 1 1 116 1 117 5.15e-45 158
MsaG046766 MtrunA17_Chr5g0400821 59.167 120 48 1 1 119 1 120 5.85e-45 157
MsaG046766 MtrunA17_Chr8g0342461 73.333 90 23 1 1 89 1 90 1.29e-44 150
MsaG046766 MtrunA17_Chr2g0327351 63.063 111 40 1 1 110 1 111 1.73e-44 156
MsaG046766 MtrunA17_Chr7g0217221 55.932 118 52 0 1 118 1 118 3.15e-44 154
MsaG046766 MtrunA17_Chr8g0342471 72.222 90 24 1 1 89 1 90 5.96e-44 149
MsaG046766 MtrunA17_Chr4g0054391 61.818 110 41 1 1 109 1 110 9.78e-44 153
MsaG046766 MtrunA17_Chr4g0060721 57.759 116 49 0 1 116 2 117 1.38e-43 154
MsaG046766 MtrunA17_Chr7g0264641 57.265 117 49 1 1 116 1 117 4.03e-43 151
MsaG046766 MtrunA17_Chr7g0254411 54.400 125 55 1 1 123 1 125 8.18e-43 152
MsaG046766 MtrunA17_Chr7g0247131 69.663 89 27 0 44 132 10 98 1.01e-42 150
MsaG046766 MtrunA17_Chr7g0269831 56.835 139 59 1 1 138 1 139 1.24e-42 152
MsaG046766 MtrunA17_Chr3g0092401 55.932 118 52 0 1 118 2 119 2.23e-42 150
MsaG046766 MtrunA17_Chr4g0022881 61.321 106 41 0 9 114 9 114 2.27e-42 148
MsaG046766 MtrunA17_Chr3g0099131 62.617 107 40 0 12 118 41 147 5.23e-42 154
MsaG046766 MtrunA17_Chr7g0228231 55.000 120 52 1 1 118 1 120 3.23e-41 144
MsaG046766 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 3.43e-41 148
MsaG046766 MtrunA17_Chr1g0154031 47.712 153 68 2 12 154 76 226 3.92e-41 150
MsaG046766 MtrunA17_Chr6g0453211 57.273 110 47 0 1 110 1 110 4.55e-41 147
MsaG046766 MtrunA17_Chr4g0022891 43.605 172 87 2 9 170 9 180 4.86e-41 145
MsaG046766 MtrunA17_Chr8g0354661 62.264 106 40 0 12 117 37 142 7.75e-41 151
MsaG046766 MtrunA17_Chr6g0450101 58.333 108 45 0 11 118 13 120 1.41e-40 142
MsaG046766 MtrunA17_Chr1g0209661 50.407 123 61 0 11 133 26 148 1.58e-40 145
MsaG046766 MtrunA17_Chr6g0487491 54.839 124 47 2 1 115 1 124 2.87e-40 143
MsaG046766 MtrunA17_Chr4g0055981 59.813 107 43 0 9 115 52 158 3.64e-40 142
MsaG046766 MtrunA17_Chr1g0186061 57.658 111 47 0 5 115 13 123 5.24e-40 142
MsaG046766 MtrunA17_Chr1g0180391 54.135 133 54 2 12 143 19 145 1.48e-39 140
MsaG046766 MtrunA17_Chr3g0080861 57.547 106 45 0 12 117 37 142 1.82e-39 147
MsaG046766 MtrunA17_Chr8g0343831 55.455 110 49 0 10 119 6 115 2.34e-39 140
MsaG046766 MtrunA17_Chr1g0168661 55.263 114 51 0 4 117 13 126 3.52e-39 140
MsaG046766 MtrunA17_Chr4g0042611 62.500 88 33 0 1 88 1 88 1.82e-37 130
MsaG046766 MtrunA17_Chr7g0240821 60.000 100 40 0 17 116 6 105 3.44e-37 134
MsaG046766 MtrunA17_Chr2g0322521 60.377 106 42 0 12 117 29 134 3.97e-37 138
MsaG046766 MtrunA17_Chr5g0434931 52.727 110 52 0 12 121 35 144 5.54e-37 135
MsaG046766 MtrunA17_Chr5g0434831 58.095 105 44 0 12 116 7 111 5.59e-37 132
MsaG046766 MtrunA17_Chr1g0194301 53.153 111 52 0 12 122 33 143 6.07e-37 135
MsaG046766 MtrunA17_Chr5g0434911 53.636 110 51 0 7 116 16 125 7.66e-37 135
MsaG046766 MtrunA17_Chr1g0194291 54.955 111 50 0 12 122 21 131 9.95e-37 134
MsaG046766 MtrunA17_Chr1g0192411 57.009 107 46 0 11 117 11 117 4.02e-36 136
MsaG046766 MtrunA17_Chr8g0360111 57.426 101 43 0 12 112 25 125 3.50e-35 130
MsaG046766 MtrunA17_Chr7g0220341 53.636 110 49 1 12 119 25 134 3.93e-35 130
MsaG046766 MtrunA17_Chr5g0434841 55.238 105 47 0 12 116 20 124 4.26e-35 131
MsaG046766 MtrunA17_Chr2g0327821 34.538 249 128 4 9 254 3 219 4.70e-35 129
MsaG046766 MtrunA17_Chr2g0294811 62.500 88 33 0 1 88 1 88 9.07e-35 124
MsaG046766 MtrunA17_Chr7g0228991 54.286 105 48 0 12 116 29 133 1.31e-34 129
MsaG046766 MtrunA17_Chr4g0013361 48.936 141 66 4 12 149 10 147 1.64e-34 129
MsaG046766 MtrunA17_Chr8g0334881 53.636 110 50 1 9 117 7 116 2.36e-34 129
MsaG046766 MtrunA17_Chr5g0440781 50.893 112 53 2 13 123 13 123 7.36e-34 124
MsaG046766 MtrunA17_Chr4g0030881 50.877 114 49 1 13 119 8 121 1.70e-33 125
MsaG046766 MtrunA17_Chr5g0441141 50.893 112 53 2 13 123 13 123 3.17e-33 125
MsaG046766 MtrunA17_Chr5g0440761 50.893 112 53 2 13 123 13 123 3.36e-33 125
MsaG046766 MtrunA17_Chr2g0293911 54.054 111 51 0 12 122 24 134 2.14e-32 124
MsaG046766 MtrunA17_Chr4g0068921 54.054 111 51 0 12 122 24 134 4.16e-32 120
MsaG046766 MtrunA17_Chr5g0395221 65.000 80 28 0 9 88 9 88 7.89e-32 115
MsaG046766 MtrunA17_Chr4g0008551 46.154 156 73 5 14 165 38 186 1.87e-31 122
MsaG046766 MtrunA17_Chr2g0323321 61.728 81 31 0 12 92 11 91 2.98e-31 115
MsaG046766 MtrunA17_Chr5g0441131 44.030 134 73 2 13 145 10 142 6.16e-31 116
MsaG046766 MtrunA17_Chr3g0093811 46.763 139 70 1 44 178 14 152 6.39e-31 119
MsaG046766 MtrunA17_Chr3g0099141 59.036 83 34 0 12 94 40 122 1.35e-30 114
MsaG046766 MtrunA17_Chr4g0053431 52.941 102 47 1 14 115 5 105 3.03e-28 111
MsaG046766 MtrunA17_Chr5g0429661 46.154 104 55 1 12 115 120 222 3.26e-28 113
MsaG046766 MtrunA17_Chr5g0401731 48.276 116 59 1 14 129 15 129 3.24e-27 110
MsaG046766 MtrunA17_Chr6g0454921 47.748 111 57 1 14 124 15 124 5.75e-26 103
MsaG046766 MtrunA17_Chr7g0238631 40.719 167 85 5 11 170 110 269 6.10e-26 109
MsaG046766 MtrunA17_Chr3g0133601 50.000 102 50 1 14 115 37 137 6.69e-25 101
MsaG046766 MtrunA17_Chr3g0139671 47.170 106 55 1 11 116 82 186 1.03e-24 106
MsaG046766 MtrunA17_Chr6g0453751 54.839 93 33 2 12 95 20 112 1.19e-24 98.2
MsaG046766 MtrunA17_Chr3g0117511 35.329 167 97 5 14 176 183 342 1.87e-24 104
MsaG046766 MtrunA17_Chr6g0480581 41.379 116 66 2 14 129 4 117 3.06e-24 100
MsaG046766 MtrunA17_Chr4g0058991 41.071 112 63 2 9 119 204 313 5.85e-24 102
MsaG046766 MtrunA17_Chr7g0229101 60.000 70 28 0 44 113 4 73 6.37e-24 98.2
MsaG046766 MtrunA17_Chr5g0434901 60.294 68 27 0 46 113 7 74 7.88e-24 95.5
MsaG046766 MtrunA17_Chr1g0157731 45.283 106 57 1 11 116 88 192 9.39e-24 103
MsaG046766 MtrunA17_Chr7g0229131 57.746 71 30 0 44 114 4 74 3.34e-23 95.5
MsaG046766 MtrunA17_Chr5g0417621 40.367 109 64 1 11 119 131 238 3.35e-23 100
MsaG046766 MtrunA17_Chr6g0460661 42.453 106 58 2 14 118 16 119 4.19e-23 94.7
MsaG046766 MtrunA17_Chr5g0437321 48.485 99 50 1 14 112 19 116 4.66e-23 97.8
MsaG046766 MtrunA17_Chr4g0042501 41.509 106 61 1 14 119 105 209 4.72e-23 100
MsaG046766 MtrunA17_Chr7g0228531 39.623 106 62 2 14 119 220 323 6.41e-22 96.7
MsaG046766 MtrunA17_Chr5g0425591 48.810 84 42 1 13 95 10 93 9.23e-22 89.0
MsaG046766 MtrunA17_Chr3g0125801 43.925 107 57 2 14 119 16 120 9.67e-22 94.4
MsaG046766 MtrunA17_Chr5g0397841 45.918 98 52 1 12 109 108 204 1.05e-21 96.7
MsaG046766 MtrunA17_Chr6g0460671 40.952 105 61 1 14 118 99 202 1.77e-21 94.7
MsaG046766 MtrunA17_Chr1g0177901 38.346 133 66 4 25 149 5 129 2.67e-21 91.3
MsaG046766 MtrunA17_Chr7g0228401 45.977 87 46 1 25 111 290 375 2.80e-21 95.5
MsaG046766 MtrunA17_Chr7g0254261 39.344 122 73 1 8 129 83 203 2.45e-20 91.3
MsaG046766 MtrunA17_Chr7g0228481 39.091 110 62 3 14 120 220 327 5.52e-20 91.3
MsaG046766 MtrunA17_Chr7g0238651 37.069 116 65 2 17 124 10 125 3.09e-19 88.2
MsaG046766 MtrunA17_Chr7g0233061 36.792 106 63 3 14 119 180 281 5.27e-17 81.6
MsaG046766 MtrunA17_Chr5g0416341 36.190 105 66 1 17 121 29 132 7.08e-17 82.0
MsaG046766 MtrunA17_Chr1g0193901 49.438 89 43 2 10 96 9 97 1.15e-15 72.8
MsaG046766 MtrunA17_Chr1g0193891 49.438 89 43 2 10 96 9 97 1.15e-15 72.8
MsaG046766 MtrunA17_Chr1g0193871 49.438 89 43 2 10 96 9 97 1.15e-15 72.8
MsaG046766 MtrunA17_Chr1g0193881 49.438 89 43 2 10 96 9 97 1.15e-15 72.8
MsaG046766 MtrunA17_Chr8g0362231 35.354 99 63 1 17 115 25 122 2.25e-15 77.4
MsaG046766 MtrunA17_Chr5g0395231 62.745 51 19 0 78 128 5 55 8.31e-15 73.6
MsaG046766 MtrunA17_Chr4g0042621 71.739 46 12 1 84 128 9 54 5.28e-13 69.3
MsaG046766 MtrunA17_Chr3g0104491 37.931 87 47 3 53 132 1 87 2.60e-12 67.0
MsaG046766 MtrunA17_Chr5g0434871 55.814 43 19 0 74 116 2 44 9.41e-12 60.5
MsaG046766 MtrunA17_Chr3g0145551 62.500 40 15 0 92 131 2 41 2.73e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046766 AT4G01680.3 84.868 152 22 1 1 152 1 151 3.45e-92 277
MsaG046766 AT4G01680.1 84.868 152 22 1 1 152 1 151 2.54e-91 278
MsaG046766 AT1G57560.1 50.865 289 130 6 1 278 1 288 1.23e-88 270
MsaG046766 AT4G01680.2 78.659 164 22 2 1 152 1 163 7.64e-88 270
MsaG046766 AT1G09540.1 40.767 417 161 12 1 385 1 363 3.09e-86 266
MsaG046766 AT1G57560.2 87.970 133 16 0 1 133 1 133 5.97e-85 259
MsaG046766 AT5G26660.1 86.822 129 17 0 1 129 1 129 9.82e-83 257
MsaG046766 AT3G12720.1 70.635 126 36 1 1 126 12 136 7.81e-66 212
MsaG046766 AT3G13890.2 76.724 116 27 0 1 116 1 116 3.25e-65 212
MsaG046766 AT3G61250.1 68.992 129 40 0 1 129 1 129 7.77e-63 204
MsaG046766 AT1G63910.1 67.969 128 41 0 1 128 1 128 8.38e-63 206
MsaG046766 AT3G02940.2 64.885 131 46 0 1 131 1 131 3.15e-62 202
MsaG046766 AT3G13890.1 71.200 125 27 1 1 116 1 125 4.79e-62 204
MsaG046766 AT3G02940.1 64.885 131 46 0 1 131 1 131 8.66e-62 202
MsaG046766 AT3G02940.3 64.885 131 46 0 1 131 1 131 8.66e-62 202
MsaG046766 AT5G16770.4 64.885 131 46 0 1 131 1 131 1.27e-61 201
MsaG046766 AT5G16770.3 64.885 131 46 0 1 131 1 131 1.27e-61 201
MsaG046766 AT5G16770.1 64.885 131 46 0 1 131 1 131 3.13e-61 201
MsaG046766 AT5G16770.2 64.885 131 46 0 1 131 1 131 3.13e-61 201
MsaG046766 AT5G15310.2 67.176 131 43 0 1 131 1 131 1.09e-60 199
MsaG046766 AT5G15310.1 67.176 131 43 0 1 131 1 131 1.19e-60 199
MsaG046766 AT5G15310.4 67.176 131 43 0 1 131 1 131 2.16e-60 196
MsaG046766 AT3G01140.2 68.504 127 40 0 1 127 1 127 4.83e-60 198
MsaG046766 AT4G34990.1 57.237 152 64 1 1 151 1 152 6.21e-60 195
MsaG046766 AT5G16600.1 63.380 142 52 0 1 142 1 142 1.93e-59 196
MsaG046766 AT1G66230.1 61.806 144 55 0 1 144 1 144 3.92e-59 194
MsaG046766 AT2G16720.1 62.595 131 49 0 1 131 1 131 5.91e-59 192
MsaG046766 AT4G05100.1 65.116 129 44 1 1 128 1 129 6.96e-59 194
MsaG046766 AT1G34670.1 63.636 132 48 0 1 132 1 132 1.11e-58 195
MsaG046766 AT4G21440.1 64.844 128 45 0 1 128 1 128 1.34e-58 194
MsaG046766 AT4G38620.1 54.658 161 62 2 1 158 1 153 1.66e-58 192
MsaG046766 AT4G09460.1 52.047 171 82 0 1 171 1 171 5.59e-58 189
MsaG046766 AT4G28110.1 64.062 128 46 0 1 128 1 128 7.36e-58 190
MsaG046766 AT5G60890.1 57.971 138 58 0 1 138 1 138 8.45e-58 191
MsaG046766 AT5G56110.1 64.394 132 47 0 1 132 1 132 1.09e-57 191
MsaG046766 AT4G12350.1 62.879 132 49 0 1 132 1 132 1.64e-57 189
MsaG046766 AT5G10280.1 62.121 132 50 0 1 132 1 132 2.00e-57 191
MsaG046766 AT5G65230.1 64.122 131 47 0 1 131 1 131 2.40e-57 190
MsaG046766 AT3G01140.1 68.852 122 38 0 6 127 49 170 3.00e-57 192
MsaG046766 AT4G22680.1 62.595 131 49 0 1 131 1 131 3.41e-57 188
MsaG046766 AT1G22640.1 61.069 131 51 0 1 131 1 131 6.43e-57 187
MsaG046766 AT5G61420.2 60.448 134 53 0 1 134 1 134 1.21e-56 190
MsaG046766 AT5G07690.1 59.712 139 56 0 1 139 1 139 2.08e-56 188
MsaG046766 AT4G17785.2 64.341 129 45 1 1 128 1 129 8.97e-56 187
MsaG046766 AT4G17785.1 64.341 129 45 1 1 128 1 129 1.05e-55 187
MsaG046766 AT5G12870.1 72.477 109 30 0 10 118 16 124 3.28e-55 183
MsaG046766 AT5G14340.1 51.765 170 79 1 1 170 13 179 4.94e-55 182
MsaG046766 AT3G08500.1 70.940 117 31 1 4 117 19 135 7.29e-55 184
MsaG046766 AT5G07700.1 50.279 179 74 2 1 164 1 179 9.27e-55 184
MsaG046766 AT5G07700.2 50.279 179 74 2 1 164 1 179 9.27e-55 184
MsaG046766 AT1G74430.1 63.281 128 47 0 1 128 1 128 9.82e-55 182
MsaG046766 AT1G18570.1 61.069 131 50 1 1 130 1 131 1.28e-54 184
MsaG046766 AT1G35515.1 59.542 131 53 0 1 131 1 131 4.11e-54 178
MsaG046766 AT3G28470.1 61.364 132 51 0 1 132 1 132 1.90e-53 180
MsaG046766 AT1G74080.1 59.690 129 52 0 1 129 1 129 2.97e-53 180
MsaG046766 AT5G54230.1 61.719 128 49 0 1 128 1 128 4.80e-53 179
MsaG046766 AT2G31180.1 50.000 174 86 1 1 173 1 174 5.57e-53 176
MsaG046766 AT3G23250.1 64.655 116 41 0 1 116 1 116 7.01e-53 177
MsaG046766 AT1G79180.1 67.521 117 38 0 2 118 4 120 1.58e-52 177
MsaG046766 AT3G13540.1 62.097 124 47 0 6 129 17 140 3.68e-52 174
MsaG046766 AT5G26660.2 83.333 90 15 0 40 129 9 98 1.06e-50 173
MsaG046766 AT1G06180.1 64.407 118 42 0 1 118 1 118 1.32e-50 170
MsaG046766 AT5G62320.1 56.250 144 56 1 2 138 3 146 1.41e-50 170
MsaG046766 AT3G48920.1 67.568 111 36 0 9 119 15 125 1.70e-50 171
MsaG046766 AT1G16490.1 48.925 186 75 2 2 179 4 177 2.87e-50 170
MsaG046766 AT1G18710.1 58.140 129 54 0 1 129 1 129 2.89e-50 170
MsaG046766 AT1G56160.1 65.217 115 40 0 2 116 4 118 1.93e-49 169
MsaG046766 AT5G23000.1 62.393 117 43 1 1 116 1 117 3.89e-47 164
MsaG046766 AT4G25560.1 68.519 108 34 0 8 115 6 113 6.63e-47 162
MsaG046766 AT5G49330.1 42.241 232 98 4 1 226 1 202 1.31e-46 163
MsaG046766 AT5G57620.1 60.000 125 47 2 1 122 1 125 1.49e-46 162
MsaG046766 AT5G52260.1 71.028 107 31 0 9 115 9 115 4.04e-46 159
MsaG046766 AT2G47460.1 56.818 132 57 0 1 132 1 132 5.33e-46 162
MsaG046766 AT3G62610.1 62.069 116 44 0 1 116 1 116 6.29e-46 161
MsaG046766 AT3G49690.1 60.833 120 46 1 1 119 1 120 7.99e-46 160
MsaG046766 AT1G79180.2 52.667 150 38 1 2 118 4 153 1.01e-45 160
MsaG046766 AT3G12820.1 61.538 117 45 0 3 119 5 121 1.09e-45 157
MsaG046766 AT5G65790.1 60.000 120 47 1 1 119 1 120 2.68e-45 160
MsaG046766 AT3G47600.1 57.627 118 50 0 1 118 1 118 1.16e-44 157
MsaG046766 AT1G74650.1 59.483 116 47 0 1 116 1 116 1.76e-44 157
MsaG046766 AT5G62470.2 58.475 118 49 0 1 118 1 118 3.32e-44 157
MsaG046766 AT4G37780.1 44.974 189 90 5 1 188 1 176 5.07e-44 155
MsaG046766 AT2G36890.1 55.906 127 55 1 1 126 1 127 1.41e-43 154
MsaG046766 AT2G36890.2 55.906 127 55 1 1 126 42 168 2.06e-43 154
MsaG046766 AT1G08810.1 55.738 122 54 0 1 122 1 122 2.65e-43 152
MsaG046766 AT5G35550.1 59.322 118 46 1 1 116 1 118 9.49e-43 150
MsaG046766 AT5G62470.1 58.475 118 48 1 1 118 1 117 2.03e-42 152
MsaG046766 AT5G06100.1 62.037 108 41 0 10 117 30 137 6.39e-42 153
MsaG046766 AT5G14750.1 56.731 104 45 0 13 116 17 120 8.80e-42 146
MsaG046766 AT3G28910.1 57.759 116 49 0 1 116 1 116 1.09e-41 149
MsaG046766 AT5G06100.5 62.037 108 41 0 10 117 30 137 2.26e-41 152
MsaG046766 AT5G06100.2 62.037 108 41 0 10 117 30 137 2.26e-41 152
MsaG046766 AT5G06100.3 62.037 108 41 0 10 117 30 137 2.26e-41 152
MsaG046766 AT5G06100.4 62.037 108 41 0 10 117 30 137 2.26e-41 152
MsaG046766 AT3G27810.1 55.856 111 49 0 11 121 19 129 2.40e-41 145
MsaG046766 AT3G01530.1 57.547 106 45 0 12 117 25 130 4.17e-41 144
MsaG046766 AT5G55020.1 60.748 107 42 0 12 118 26 132 8.88e-41 151
MsaG046766 AT3G11440.2 60.377 106 42 0 12 117 41 146 1.97e-40 149
MsaG046766 AT4G26930.1 59.813 107 43 0 12 118 19 125 1.97e-40 147
MsaG046766 AT5G40330.1 53.704 108 50 0 9 116 9 116 2.12e-40 143
MsaG046766 AT5G40350.1 56.364 110 48 0 11 120 16 125 2.34e-40 142
MsaG046766 AT3G27920.1 53.271 107 50 0 10 116 12 118 5.92e-40 142
MsaG046766 AT5G52600.1 44.805 154 70 2 9 147 9 162 5.93e-40 141
MsaG046766 AT3G11440.3 58.716 109 45 0 9 117 38 146 8.85e-40 149
MsaG046766 AT3G11440.4 58.716 109 45 0 9 117 38 146 8.85e-40 149
MsaG046766 AT3G11440.1 58.716 109 45 0 9 117 38 146 8.85e-40 149
MsaG046766 AT2G26960.1 35.745 235 124 4 9 222 17 245 1.32e-39 146
MsaG046766 AT2G32460.1 56.481 108 47 0 10 117 16 123 2.40e-39 147
MsaG046766 AT2G32460.2 57.547 106 45 0 12 117 6 111 2.76e-39 146
MsaG046766 AT4G13480.1 60.952 105 41 0 13 117 7 111 9.93e-39 140
MsaG046766 AT3G24310.1 60.000 105 42 0 13 117 19 123 4.55e-38 138
MsaG046766 AT1G25340.1 46.358 151 67 2 13 151 19 167 5.21e-38 138
MsaG046766 AT3G30210.1 60.784 102 40 0 13 114 28 129 9.92e-38 137
MsaG046766 AT1G48000.1 56.731 104 45 0 11 114 31 134 3.23e-37 135
MsaG046766 AT1G68320.1 54.867 113 51 0 10 122 17 129 5.44e-37 135
MsaG046766 AT3G53200.1 56.075 107 47 0 9 115 6 112 6.33e-36 131
MsaG046766 AT1G66370.1 56.731 104 45 0 12 115 8 111 1.09e-35 131
MsaG046766 AT2G26950.1 50.435 115 54 1 6 120 10 121 1.81e-35 134
MsaG046766 AT2G47190.1 49.550 111 56 0 12 122 20 130 7.59e-35 130
MsaG046766 AT5G59780.3 52.252 111 53 0 9 119 5 115 8.12e-35 129
MsaG046766 AT3G46130.1 53.271 107 50 0 13 119 10 116 3.96e-34 127
MsaG046766 AT1G56650.1 51.200 125 53 1 12 128 8 132 5.37e-34 127
MsaG046766 AT1G66380.1 59.615 104 42 0 12 115 8 111 1.15e-33 122
MsaG046766 AT3G60460.1 49.580 119 53 2 9 126 8 120 1.77e-33 127
MsaG046766 AT1G25340.2 44.371 151 65 3 13 151 19 162 3.26e-33 125
MsaG046766 AT3G06490.1 56.757 111 48 0 12 122 19 129 4.07e-33 126
MsaG046766 AT1G25340.3 44.371 151 65 3 13 151 19 162 7.92e-33 125
MsaG046766 AT1G66390.1 57.547 106 45 0 10 115 6 111 5.53e-32 121
MsaG046766 AT5G49620.1 54.054 111 51 0 12 122 26 136 4.62e-31 120
MsaG046766 AT5G35550.2 63.043 92 26 1 25 116 38 121 1.15e-30 118
MsaG046766 AT3G12820.2 69.444 72 22 0 48 119 2 73 1.86e-30 115
MsaG046766 AT3G27810.2 61.039 77 30 0 45 121 4 80 4.62e-30 114
MsaG046766 AT5G14750.3 65.217 69 24 0 48 116 18 86 7.62e-29 110
MsaG046766 AT5G40350.2 61.842 76 29 0 45 120 5 80 1.14e-28 110
MsaG046766 AT3G46130.3 61.842 76 29 0 44 119 9 84 5.23e-28 110
MsaG046766 AT3G47600.2 53.684 95 40 1 24 118 22 112 8.95e-28 112
MsaG046766 AT5G59780.2 61.039 77 30 0 43 119 18 94 1.15e-27 108
MsaG046766 AT3G46130.4 61.039 77 30 0 43 119 18 94 1.18e-27 109
MsaG046766 AT5G49620.2 48.000 125 51 1 12 122 26 150 1.44e-27 111
MsaG046766 AT3G53200.2 63.158 76 28 0 40 115 4 79 1.61e-27 108
MsaG046766 AT1G18960.1 43.333 120 63 3 14 132 10 125 2.03e-27 110
MsaG046766 AT4G18770.1 45.045 111 60 1 9 119 212 321 2.39e-27 112
MsaG046766 AT1G22640.3 60.811 74 29 0 58 131 1 74 3.20e-27 107
MsaG046766 AT5G67300.1 51.961 102 48 1 14 115 6 106 1.25e-26 108
MsaG046766 AT5G40360.1 44.444 108 58 2 9 116 153 258 2.12e-26 108
MsaG046766 AT3G27785.1 43.333 120 63 3 9 125 184 301 5.97e-26 108
MsaG046766 AT4G37260.1 44.361 133 66 2 14 146 13 137 7.44e-26 106
MsaG046766 AT5G58850.1 41.935 124 66 2 12 135 103 220 1.02e-25 108
MsaG046766 AT2G39880.1 54.369 103 44 2 14 115 50 150 1.55e-25 106
MsaG046766 AT3G50060.1 51.961 102 48 1 14 115 6 106 1.79e-25 105
MsaG046766 AT1G71030.2 55.844 77 34 0 51 127 5 81 3.80e-25 101
MsaG046766 AT1G71030.1 55.844 77 34 0 51 127 19 95 5.29e-25 101
MsaG046766 AT5G02320.1 47.170 106 55 1 11 116 124 228 5.31e-25 107
MsaG046766 AT5G02320.2 47.170 106 55 1 11 116 124 228 5.31e-25 107
MsaG046766 AT5G02320.3 47.170 106 55 1 11 116 64 168 5.73e-25 106
MsaG046766 AT5G11050.1 37.838 148 70 4 14 140 105 251 6.07e-25 105
MsaG046766 AT3G09370.1 49.038 104 52 1 12 115 128 230 6.47e-25 106
MsaG046766 AT3G09370.2 49.038 104 52 1 12 115 133 235 7.53e-25 106
MsaG046766 AT3G55730.1 52.427 103 46 2 14 115 56 156 1.06e-24 104
MsaG046766 AT3G09370.3 49.038 104 52 1 12 115 141 243 1.20e-24 105
MsaG046766 AT3G09230.1 48.544 103 52 1 14 116 55 156 1.67e-24 104
MsaG046766 AT1G17950.1 43.396 106 59 1 14 119 5 109 2.52e-24 100
MsaG046766 AT3G23250.2 69.492 59 18 0 58 116 1 59 3.67e-24 99.8
MsaG046766 AT5G11510.3 45.283 106 57 1 11 116 78 182 8.15e-24 104
MsaG046766 AT5G11510.1 45.283 106 57 1 11 116 78 182 8.15e-24 104
MsaG046766 AT5G11510.4 45.283 106 57 1 11 116 78 182 8.15e-24 104
MsaG046766 AT5G11510.2 45.283 106 57 1 11 116 78 182 1.07e-23 103
MsaG046766 AT1G69560.1 41.071 112 63 2 9 119 102 211 1.10e-23 100
MsaG046766 AT5G11510.5 45.283 106 57 1 11 116 78 182 1.13e-23 103
MsaG046766 AT2G23290.1 43.609 133 73 2 14 146 13 143 1.13e-23 100
MsaG046766 AT1G69560.2 40.708 113 64 2 9 120 118 228 1.19e-23 100
MsaG046766 AT1G73410.1 47.170 106 53 2 14 118 6 109 5.93e-23 97.1
MsaG046766 AT1G26780.1 42.593 108 59 2 12 118 96 201 8.00e-23 97.4
MsaG046766 AT1G26780.2 42.593 108 59 2 12 118 96 201 9.23e-23 98.6
MsaG046766 AT4G32730.5 44.340 106 58 1 11 116 84 188 1.19e-22 100
MsaG046766 AT4G32730.4 44.340 106 58 1 11 116 84 188 1.19e-22 100
MsaG046766 AT4G32730.3 44.340 106 58 1 11 116 84 188 1.19e-22 100
MsaG046766 AT4G32730.2 44.340 106 58 1 11 116 84 188 1.19e-22 100
MsaG046766 AT4G32730.1 44.340 106 58 1 11 116 84 188 1.43e-22 100
MsaG046766 AT1G73410.2 47.170 106 53 2 14 118 6 109 2.16e-22 94.4
MsaG046766 AT2G25230.1 39.831 118 68 2 9 124 21 137 4.78e-22 94.4
MsaG046766 AT4G33450.1 40.000 110 65 1 9 118 14 122 4.98e-22 94.7
MsaG046766 AT1G66380.3 61.111 72 28 0 44 115 7 78 7.29e-22 90.1
MsaG046766 AT1G66380.2 57.500 80 34 0 10 89 6 85 7.66e-22 90.1
MsaG046766 AT5G17800.1 40.000 105 62 1 14 118 93 196 4.00e-21 93.6
MsaG046766 AT3G29020.1 37.838 111 68 1 14 124 65 174 1.32e-20 90.1
MsaG046766 AT3G29020.2 38.679 106 64 1 14 119 67 171 1.57e-20 91.7
MsaG046766 AT5G14750.4 58.065 62 26 0 58 119 1 62 2.95e-20 86.7
MsaG046766 AT5G14750.2 58.065 62 26 0 58 119 1 62 2.95e-20 86.7
MsaG046766 AT2G02820.3 38.655 119 71 2 4 121 19 136 8.24e-20 89.7
MsaG046766 AT2G02820.1 38.655 119 71 2 4 121 19 136 1.14e-19 90.9
MsaG046766 AT2G02820.2 38.655 119 71 2 4 121 19 136 1.82e-19 90.5
MsaG046766 AT4G00540.2 43.636 110 58 2 12 118 101 209 3.06e-19 89.0
MsaG046766 AT5G40430.1 39.286 112 65 3 9 120 49 157 4.50e-19 86.3
MsaG046766 AT4G00540.1 43.636 110 58 2 12 118 99 207 5.18e-19 88.6
MsaG046766 AT1G14350.2 40.000 105 62 1 17 121 28 131 3.67e-18 86.3
MsaG046766 AT1G14350.1 40.000 105 62 1 17 121 28 131 3.67e-18 86.3
MsaG046766 AT5G61420.1 68.519 54 17 0 81 134 2 55 8.26e-18 83.6
MsaG046766 AT2G37630.1 35.652 115 67 2 17 124 7 121 1.17e-16 81.3
MsaG046766 AT5G39700.1 33.621 116 76 1 9 124 51 165 4.79e-16 76.3
MsaG046766 AT1G74430.2 61.538 52 20 0 77 128 8 59 3.57e-15 73.9
MsaG046766 AT4G28110.2 73.171 41 11 0 88 128 4 44 1.39e-14 72.4
MsaG046766 AT5G15310.3 72.727 44 12 0 88 131 9 52 5.15e-14 71.6
MsaG046766 AT5G14340.2 40.964 83 46 1 88 170 10 89 5.36e-14 70.5
MsaG046766 AT5G59780.1 59.574 47 19 0 73 119 4 50 3.42e-13 67.8
MsaG046766 AT3G46130.2 59.574 47 19 0 73 119 4 50 4.27e-13 67.8
MsaG046766 AT1G14350.3 45.455 66 36 0 56 121 23 88 1.83e-12 68.6
MsaG046766 AT1G14350.4 45.455 66 36 0 56 121 23 88 1.83e-12 68.6
MsaG046766 AT4G25560.2 65.217 46 16 0 70 115 2 47 2.79e-12 66.2
MsaG046766 AT3G18100.1 37.500 96 59 1 13 108 545 639 1.05e-11 67.0
MsaG046766 AT3G18100.4 37.500 96 59 1 13 108 384 478 1.40e-11 66.6
MsaG046766 AT3G18100.3 37.500 96 59 1 13 108 497 591 1.46e-11 66.6
MsaG046766 AT3G18100.2 37.500 96 59 1 13 108 332 426 1.80e-11 66.2
MsaG046766 AT1G22640.2 59.091 44 18 0 88 131 16 59 2.34e-11 62.8

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig1 gene 1971484 1972908 1971484 ID=MsaG046766
Contig1 mRNA 1971484 1972908 1971484 ID=MsaT046766.1;Parent=MsaG046766
Contig1 exon 1971484 1972384 1971484 ID=MsaT046766.1.exon3;Parent=MsaT046766.1
Contig1 CDS 1971484 1972384 1971484 ID=cds.MsaT046766.1;Parent=MsaT046766.1
Contig1 exon 1972541 1972670 1972541 ID=MsaT046766.1.exon2;Parent=MsaT046766.1
Contig1 CDS 1972541 1972670 1972541 ID=cds.MsaT046766.1;Parent=MsaT046766.1
Contig1 exon 1972776 1972908 1972776 ID=MsaT046766.1.exon1;Parent=MsaT046766.1
Contig1 CDS 1972776 1972908 1972776 ID=cds.MsaT046766.1;Parent=MsaT046766.1
Gene Sequence

>MsaT046766.1

ATGGGAAGGCACTCATGTTGTTACAAGCAGAAGCTTAGGAAAGGTCTATGGTCACCAGAAGAAGATGAAAAACTACTGAGGCATATAACAAAGTATGGTCATGGATGTTGGAGTTCAGTACCTAAGCAAGCAGGTTTGCAAAGATGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTCTCACAAGAGGAAGAAAATCTCATTGTTGAACTTCATGCAGTACTAGGGAATAGATGGTCTCAAATTGCGGCGCAATTGCCGGGGAGGACAGACAATGAAATAAAGAATTTATGGAACTCTTGTTTGAAGAAGAGACTGAGACAAAAAGGTATAGATCCTGTGACTCATAAACCATTGTCTGAGATTGAGAATAATGGAGAGGAAAATGGTAATAAGAGTCAAGAGAAAGCACCAGAGATATTATTATCCAATGAATTGAACCTTTTGAAATCAGAGAGTTCAAAATCAGATGCAGCTTCTAGCTATGAGCAGAGAACAACATCTTCAATTTCACCAAAAGCATATGCAATGGAAATGGAAGGTTCTTGCAACAAAGAGTTTTTCATAGATAGGTTCATTCAACCCTCAGATTTGATGGGAAATTTTCCACTTCAAATGAGTTATACAAACACTGAAAATGATTGTTTACCAAATGATTCAAACACTAGTAGTAACCATTGGTTCAACCAAACTGGAAAATCTTTTGATATGAATACTGATCAGTTTCATTTCAATCCCACAACAACATCAACAACCATGTTTCTTCCTAATTCTTTTTGCTGCAACAATTCTCTTGATATTCCCTCTGACAATGTTTCCACAGAGATGAGAACTAGCAGCAGCAACACCTTAAACTTACATAACAACAATTTTTCTTCTTGGGGAGGATTGATGGAAAATCATACAGAAGAAGCTAAATGGGATAATAATAATAACTACTTTCAAAACCCTATCTTAATGCTTGCTTCTGAATCTTTATGCAATGAGATAAAGCCTCCATTGATGAACTTTGTACCAGATAGTTTTGGAGCTATTTTACCTCATACAAAGCAAGAACAAGAACAGTCACAAACAACTTCTAATATATTTTCCAAGGACATTCAGAAACTCAGAGAAGCTTTTGGAGATATGTGA
Protein sequence

>MsaT046766.1

MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQKGIDPVTHKPLSEIENNGEENGNKSQEKAPEILLSNELNLLKSESSKSDAASSYEQRTTSSISPKAYAMEMEGSCNKEFFIDRFIQPSDLMGNFPLQMSYTNTENDCLPNDSNTSSNHWFNQTGKSFDMNTDQFHFNPTTTSTTMFLPNSFCCNNSLDIPSDNVSTEMRTSSSNTLNLHNNNFSSWGGLMENHTEEAKWDNNNNYFQNPILMLASESLCNEIKPPLMNFVPDSFGAILPHTKQEQEQSQTTSNIFSKDIQKLREAFGDM*