AlfalfaGEDB | MsaG046796

M. sativa ssp. caerulea / MsaG046796

KEGG: K03083
GO: -
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046796	P51138.1	100.000	411	0	0	1	411	1	411	0.0	857

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046796	sp\|P51138\|MSK2_MEDSA	100.000	411	0	0	1	411	1	411	0.0	857

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046796	tr\|G7IBT9\|G7IBT9_MEDTR	99.270	411	3	0	1	411	2	412	0.0	852

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046796	MtrunA17_Chr1g0194201	99.270	411	3	0	1	411	2	412	0.0	852
MsaG046796	MtrunA17_Chr7g0270371	90.291	412	38	2	1	411	2	412	0.0	781
MsaG046796	MtrunA17_Chr1g0193081	83.659	410	66	1	1	409	1	410	0.0	727
MsaG046796	MtrunA17_Chr2g0277011	71.971	421	106	2	1	410	6	425	0.0	642
MsaG046796	MtrunA17_Chr7g0246591	73.750	400	98	1	10	402	70	469	0.0	637
MsaG046796	MtrunA17_Chr2g0320011	77.394	376	84	1	32	407	46	420	0.0	629
MsaG046796	MtrunA17_Chr8g0350311	70.905	409	109	3	2	402	61	467	0.0	615
MsaG046796	MtrunA17_Chr2g0284091	74.799	373	93	1	35	407	1	372	0.0	612
MsaG046796	MtrunA17_Chr4g0045841	35.274	292	174	6	80	363	61	345	1.19e-56	191
MsaG046796	MtrunA17_Chr7g0248461	37.037	297	171	6	78	365	42	331	2.95e-55	187

Showing 1 to 10 of 254 entries

Previous1 2 3 4 5…26Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG046796	AT5G14640.1	84.841	409	62	0	1	409	1	409	740
MsaG046796	AT5G14640.2	84.841	409	62	0	1	409	1	409	740
MsaG046796	AT5G26751.1	85.679	405	53	1	1	405	1	400	736
MsaG046796	AT3G05840.2	83.130	409	68	1	1	409	1	408	730
MsaG046796	AT3G05840.1	83.130	409	68	1	1	409	1	408	730
MsaG046796	AT4G00720.1	75.312	401	91	2	10	402	66	466	646
MsaG046796	AT1G57870.1	72.993	411	104	2	5	409	8	417	639
MsaG046796	AT1G57870.4	72.993	411	104	2	5	409	8	417	639
MsaG046796	AT1G57870.2	72.993	411	104	2	5	409	8	417	639
MsaG046796	AT1G57870.3	72.993	411	104	2	5	409	8	417	638

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Contig1	gene	2361828	2364999	2361828	ID=MsaG046796
Contig1	mRNA	2361828	2364999	2361828	ID=MsaT046796.1;Parent=MsaG046796
Contig1	exon	2361828	2361944	2361828	ID=MsaT046796.1.exon1;Parent=MsaT046796.1
Contig1	CDS	2361828	2361944	2361828	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2362434	2362526	2362434	ID=MsaT046796.1.exon2;Parent=MsaT046796.1
Contig1	CDS	2362434	2362526	2362434	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2362636	2362695	2362636	ID=MsaT046796.1.exon3;Parent=MsaT046796.1
Contig1	CDS	2362636	2362695	2362636	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2362792	2363064	2362792	ID=MsaT046796.1.exon4;Parent=MsaT046796.1
Contig1	CDS	2362792	2363064	2362792	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2363189	2363263	2363189	ID=MsaT046796.1.exon5;Parent=MsaT046796.1
Contig1	CDS	2363189	2363263	2363189	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2363430	2363486	2363430	ID=MsaT046796.1.exon6;Parent=MsaT046796.1
Contig1	CDS	2363430	2363486	2363430	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2363578	2363718	2363578	ID=MsaT046796.1.exon7;Parent=MsaT046796.1
Contig1	CDS	2363578	2363718	2363578	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2363810	2363860	2363810	ID=MsaT046796.1.exon8;Parent=MsaT046796.1
Contig1	CDS	2363810	2363860	2363810	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2364079	2364174	2364079	ID=MsaT046796.1.exon9;Parent=MsaT046796.1
Contig1	CDS	2364079	2364174	2364079	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2364263	2364346	2364263	ID=MsaT046796.1.exon10;Parent=MsaT046796.1
Contig1	CDS	2364263	2364346	2364263	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2364723	2364825	2364723	ID=MsaT046796.1.exon11;Parent=MsaT046796.1
Contig1	CDS	2364723	2364825	2364723	ID=cds.MsaT046796.1;Parent=MsaT046796.1
Contig1	exon	2364914	2364999	2364914	ID=MsaT046796.1.exon12;Parent=MsaT046796.1
Contig1	CDS	2364914	2364999	2364914	ID=cds.MsaT046796.1;Parent=MsaT046796.1

Gene Sequence

>MsaT046796.1

ATGGCAACAGCGGGTGTAGCACCTGCTTCTGGAATAGTAGATGTAAATGCAAGTTCAGCTATTGCTGTTGATAAGTTACCTGATGAGATTCTTGGCATGAGAATTAAGGATGATAAGGAAATGGAAGCACATGTGGTAGATGGAAATAGTACTGAAGCAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCGTGCTGTTGGACAGGGATCATTTGGTGTAGTTTTCCAGGCTAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAATTGCAAACAATGCGCCTTCTGGACCACCCCAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGACGAGCTCTATCTTAACTTGGTACTTGAGTTTGTTCCTGAGACTGTCCATCGTGTGATCAGACACTACAGCAAAATGAATCAGAGGATGCCATTGATATACGTAAAACTTTATTCTTACCAGATATGTAGATCACTAGCTTATATTCATAACTGTGTTGGAGTGTCTCATAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCATCAGCTGAAGCTGTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAGGGTGAACCAAACATATCTTACATCTGTTCGAGGTATTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAATACACCTCAGCCATTGACATTTGGTCAGCTGGCTGTGTGCTTGGCGAACTATTGCTTGGCCAGCCTCTCTTTCCCGGTGCGAGTGGAGTAGACCAGCTCGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACTGAGTTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCGCAAGCGTATGCCACCGGAAGCTGTGGATCTCGTCTCAAGACTACTTCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTGGTTCATCCCTTCTTTGATGAATTGCGTGATCCAAATACCCGCTTACCAAATGGGCGTCATCTTCCTCCTTTATTTAACTTCAAAGCCAACGAGCTTAAGGGAGTGCCTGCTGAAATGCTGGTGAAGTTGGTTCCGTCTCACGCAAGAAAGCAGTGTTCTTTGTTTGCGTCGTCATAG

Protein sequence

>MsaT046796.1

MATAGVAPASGIVDVNASSAIAVDKLPDEILGMRIKDDKEMEAHVVDGNSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEFVPETVHRVIRHYSKMNQRMPLIYVKLYSYQICRSLAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLVPSHARKQCSLFASS*