AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046803

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046803 MtrunA17_Chr1g0194301 94.964 278 14 0 1 278 1 278 0.0 546
MsaG046803 MtrunA17_Chr1g0194291 56.641 256 93 6 26 276 14 256 5.48e-91 270
MsaG046803 MtrunA17_Chr4g0068921 74.468 141 36 0 26 166 17 157 2.93e-72 220
MsaG046803 MtrunA17_Chr2g0293911 70.748 147 43 0 20 166 11 157 3.16e-70 219
MsaG046803 MtrunA17_Chr1g0209661 56.287 167 70 1 33 199 27 190 1.28e-67 212
MsaG046803 MtrunA17_Chr7g0228231 73.832 107 28 0 33 139 14 120 1.24e-57 183
MsaG046803 MtrunA17_Chr6g0450101 72.222 108 30 0 33 140 14 121 3.70e-57 182
MsaG046803 MtrunA17_Chr1g0168661 69.159 107 33 0 32 138 20 126 1.19e-51 169
MsaG046803 MtrunA17_Chr1g0186061 60.833 120 45 1 19 138 8 125 3.13e-49 163
MsaG046803 MtrunA17_Chr2g0327821 59.633 109 44 0 33 141 6 114 7.61e-46 154
MsaG046803 MtrunA17_Chr4g0030881 56.452 124 44 2 25 141 2 122 1.91e-44 151
MsaG046803 MtrunA17_Chr8g0346561 59.483 116 45 1 33 146 12 127 9.56e-44 150
MsaG046803 MtrunA17_Chr5g0410961 52.459 122 58 0 29 150 8 129 3.32e-43 150
MsaG046803 MtrunA17_Chr3g0099131 57.944 107 45 0 33 139 41 147 5.97e-43 153
MsaG046803 MtrunA17_Chr3g0080861 60.185 108 43 0 31 138 35 142 8.76e-43 152
MsaG046803 MtrunA17_Chr2g0323411 43.017 179 88 4 29 205 8 174 1.34e-41 145
MsaG046803 MtrunA17_Chr1g0193371 55.172 116 52 0 33 148 12 127 1.73e-41 146
MsaG046803 MtrunA17_Chr4g0039971 52.000 125 59 1 33 156 13 137 2.13e-41 145
MsaG046803 MtrunA17_Chr8g0354661 56.481 108 47 0 31 138 35 142 2.76e-41 149
MsaG046803 MtrunA17_Chr7g0275911 57.547 106 45 0 33 138 12 117 3.03e-41 142
MsaG046803 MtrunA17_Chr5g0395281 50.388 129 63 1 29 156 8 136 4.60e-41 144
MsaG046803 MtrunA17_Chr3g0115821 50.000 134 66 1 29 162 8 140 6.04e-41 144
MsaG046803 MtrunA17_Chr4g0057031 53.913 115 53 0 29 143 8 122 7.40e-41 142
MsaG046803 MtrunA17_Chr4g0070611 55.963 109 48 0 33 141 12 120 7.60e-41 143
MsaG046803 MtrunA17_Chr3g0131121 60.784 102 40 0 35 136 14 115 9.16e-41 142
MsaG046803 MtrunA17_Chr1g0187761 54.955 111 50 0 29 139 8 118 1.02e-40 141
MsaG046803 MtrunA17_Chr1g0154031 57.547 106 45 0 33 138 76 181 1.13e-40 145
MsaG046803 MtrunA17_Chr1g0203411 56.075 107 47 0 33 139 12 118 1.29e-40 142
MsaG046803 MtrunA17_Chr4g0070641 55.963 109 48 0 33 141 12 120 1.60e-40 138
MsaG046803 MtrunA17_Chr2g0281071 54.054 111 51 0 33 143 13 123 3.63e-40 142
MsaG046803 MtrunA17_Chr8g0343831 57.009 107 46 0 33 139 8 114 5.60e-40 139
MsaG046803 MtrunA17_Chr4g0055981 48.936 141 63 1 1 141 32 163 5.88e-40 139
MsaG046803 MtrunA17_Chr7g0217741 54.955 111 50 0 33 143 12 122 6.85e-40 140
MsaG046803 MtrunA17_Chr4g0048511 53.153 111 52 0 33 143 13 123 6.98e-40 142
MsaG046803 MtrunA17_Chr3g0110351 52.174 115 55 0 29 143 8 122 7.03e-40 140
MsaG046803 MtrunA17_Chr2g0328771 56.481 108 47 0 33 140 20 127 7.51e-40 140
MsaG046803 MtrunA17_Chr5g0435101 45.185 135 74 0 29 163 7 141 7.72e-40 137
MsaG046803 MtrunA17_Chr1g0180391 55.660 106 47 0 33 138 19 124 9.76e-40 138
MsaG046803 MtrunA17_Chr8g0385321 52.101 119 57 0 35 153 14 132 1.24e-39 140
MsaG046803 MtrunA17_Chr5g0434571 52.174 115 55 0 29 143 44 158 1.67e-39 140
MsaG046803 MtrunA17_Chr7g0261281 45.205 146 76 1 29 174 8 149 2.46e-39 138
MsaG046803 MtrunA17_Chr1g0211161 53.153 111 52 0 33 143 13 123 2.71e-39 137
MsaG046803 MtrunA17_Chr8g0349261 39.779 181 94 2 28 193 8 188 2.98e-39 139
MsaG046803 MtrunA17_Chr1g0167691 55.769 104 46 0 33 136 12 115 4.84e-39 137
MsaG046803 MtrunA17_Chr4g0037141 58.824 102 42 0 35 136 14 115 4.90e-39 137
MsaG046803 MtrunA17_Chr1g0151941 37.234 188 103 2 29 215 8 181 6.38e-39 136
MsaG046803 MtrunA17_Chr6g0453471 53.043 115 54 0 29 143 8 122 6.62e-39 139
MsaG046803 MtrunA17_Chr7g0217221 43.871 155 77 2 29 173 8 162 8.23e-39 137
MsaG046803 MtrunA17_Chr4g0068061 55.085 118 50 1 29 146 8 122 9.13e-39 138
MsaG046803 MtrunA17_Chr3g0117091 53.153 111 52 0 33 143 12 122 9.21e-39 139
MsaG046803 MtrunA17_Chr7g0274581 49.550 111 56 0 29 139 8 118 1.10e-38 134
MsaG046803 MtrunA17_Chr7g0270891 54.955 111 50 0 33 143 12 122 1.87e-38 138
MsaG046803 MtrunA17_Chr4g0032401 53.571 112 52 0 33 144 17 128 1.90e-38 137
MsaG046803 MtrunA17_Chr2g0330041 53.846 104 48 0 33 136 12 115 2.58e-38 139
MsaG046803 MtrunA17_Chr4g0042671 51.695 118 57 0 33 150 12 129 2.71e-38 139
MsaG046803 MtrunA17_Chr4g0022881 52.727 110 52 0 29 138 8 117 2.73e-38 134
MsaG046803 MtrunA17_Chr1g0167661 45.833 144 71 2 33 176 12 148 3.21e-38 135
MsaG046803 MtrunA17_Chr7g0271241 54.310 116 53 0 33 148 12 127 3.35e-38 138
MsaG046803 MtrunA17_Chr3g0121241 57.692 104 44 0 33 136 42 145 3.41e-38 136
MsaG046803 MtrunA17_Chr8g0387421 56.075 107 47 0 33 139 12 118 3.75e-38 136
MsaG046803 MtrunA17_Chr2g0322521 56.604 106 46 0 33 138 29 134 5.41e-38 137
MsaG046803 MtrunA17_Chr4g0022901 56.190 105 46 0 33 137 13 117 5.84e-38 134
MsaG046803 MtrunA17_Chr7g0228891 53.043 115 54 0 29 143 8 122 6.22e-38 134
MsaG046803 MtrunA17_Chr3g0092401 53.704 108 50 0 33 140 13 120 7.46e-38 135
MsaG046803 MtrunA17_Chr4g0022931 48.529 136 61 1 33 159 13 148 7.69e-38 134
MsaG046803 MtrunA17_Chr4g0022911 56.190 105 46 0 33 137 13 117 7.76e-38 135
MsaG046803 MtrunA17_Chr1g0203441 53.043 115 53 1 34 147 14 128 7.86e-38 134
MsaG046803 MtrunA17_Chr8g0342541 52.885 104 49 0 33 136 12 115 1.25e-37 135
MsaG046803 MtrunA17_Chr2g0309911 52.885 104 49 0 33 136 11 114 1.72e-37 134
MsaG046803 MtrunA17_Chr1g0193801 38.286 175 93 1 33 192 12 186 1.98e-37 136
MsaG046803 MtrunA17_Chr8g0342521 53.846 104 48 0 33 136 12 115 2.68e-37 135
MsaG046803 MtrunA17_Chr4g0060721 54.630 108 49 0 29 136 9 116 2.70e-37 134
MsaG046803 MtrunA17_Chr6g0453211 57.282 103 44 0 29 131 8 110 2.75e-37 134
MsaG046803 MtrunA17_Chr4g0022891 48.760 121 55 1 33 153 12 125 4.01e-37 131
MsaG046803 MtrunA17_Chr7g0254411 51.327 113 55 0 33 145 12 124 4.71e-37 134
MsaG046803 MtrunA17_Chr5g0397231 57.576 99 42 0 33 131 12 110 9.82e-37 133
MsaG046803 MtrunA17_Chr4g0028311 39.683 189 93 5 29 203 8 189 1.99e-36 132
MsaG046803 MtrunA17_Chr6g0470971 55.340 103 46 0 34 136 15 117 2.18e-36 130
MsaG046803 MtrunA17_Chr3g0088461 53.774 106 49 0 33 138 22 127 3.14e-36 132
MsaG046803 MtrunA17_Chr1g0194951 54.808 104 47 0 33 136 12 115 4.59e-36 132
MsaG046803 MtrunA17_Chr4g0058631 53.211 109 47 1 33 137 12 120 5.31e-36 132
MsaG046803 MtrunA17_Chr4g0044421 49.558 113 57 0 35 147 14 126 6.24e-36 127
MsaG046803 MtrunA17_Chr6g0452271 49.565 115 58 0 29 143 8 122 9.19e-36 130
MsaG046803 MtrunA17_Chr2g0327351 56.731 104 44 1 29 131 8 111 1.24e-35 130
MsaG046803 MtrunA17_Chr1g0152011 55.046 109 48 1 29 136 8 116 1.56e-35 130
MsaG046803 MtrunA17_Chr2g0323351 53.398 103 48 0 33 135 12 114 2.48e-35 127
MsaG046803 MtrunA17_Chr3g0103281 50.450 111 55 0 33 143 12 122 3.39e-35 129
MsaG046803 MtrunA17_Chr3g0135311 55.046 109 48 1 29 136 8 116 3.80e-35 129
MsaG046803 MtrunA17_Chr5g0400821 54.128 109 49 1 29 136 8 116 8.93e-35 127
MsaG046803 MtrunA17_Chr1g0192411 47.009 117 62 0 22 138 1 117 1.34e-34 129
MsaG046803 MtrunA17_Chr8g0342481 51.429 105 50 1 33 136 12 116 1.94e-34 128
MsaG046803 MtrunA17_Chr2g0311221 51.923 104 50 0 29 132 10 113 2.05e-34 127
MsaG046803 MtrunA17_Chr7g0240821 47.059 119 63 0 38 156 6 124 1.30e-33 122
MsaG046803 MtrunA17_Chr4g0072751 55.769 104 45 1 29 131 8 111 1.42e-33 125
MsaG046803 MtrunA17_Chr8g0334881 46.087 115 61 1 27 140 4 118 1.51e-33 124
MsaG046803 MtrunA17_Chr7g0269831 53.211 109 51 0 33 141 12 120 3.23e-33 124
MsaG046803 MtrunA17_Chr4g0054391 54.902 102 45 1 29 129 8 109 4.15e-33 122
MsaG046803 MtrunA17_Chr7g0264641 46.032 126 67 1 29 153 8 133 5.28e-33 122
MsaG046803 MtrunA17_Chr5g0417821 46.552 116 62 0 33 148 7 122 1.22e-32 121
MsaG046803 MtrunA17_Chr6g0487491 49.573 117 50 2 29 136 8 124 2.66e-32 119
MsaG046803 MtrunA17_Chr8g0360111 51.818 110 53 0 25 134 17 126 2.98e-32 119
MsaG046803 MtrunA17_Chr5g0440781 48.544 103 52 1 34 135 13 115 7.93e-32 116
MsaG046803 MtrunA17_Chr7g0220341 39.881 168 95 4 25 187 17 183 1.52e-31 118
MsaG046803 MtrunA17_Chr5g0441131 42.424 132 70 3 25 155 1 127 1.81e-31 115
MsaG046803 MtrunA17_Chr5g0440761 48.544 103 52 1 34 135 13 115 2.60e-31 117
MsaG046803 MtrunA17_Chr5g0441141 48.544 103 52 1 34 135 13 115 3.07e-31 117
MsaG046803 MtrunA17_Chr5g0434931 48.214 112 58 0 25 136 27 138 1.81e-30 115
MsaG046803 MtrunA17_Chr4g0013361 46.729 107 56 1 33 138 10 116 2.62e-30 115
MsaG046803 MtrunA17_Chr5g0434911 46.218 119 64 0 18 136 6 124 3.71e-30 114
MsaG046803 MtrunA17_Chr3g0099141 52.326 86 41 0 29 114 36 121 4.19e-30 110
MsaG046803 MtrunA17_Chr5g0434831 48.182 110 57 0 28 137 2 111 6.54e-30 111
MsaG046803 MtrunA17_Chr5g0434841 45.833 120 64 1 18 137 6 124 2.61e-29 113
MsaG046803 MtrunA17_Chr7g0247131 55.952 84 37 0 65 148 10 93 6.93e-29 110
MsaG046803 MtrunA17_Chr7g0228991 44.186 129 71 1 10 137 5 133 8.10e-29 110
MsaG046803 MtrunA17_Chr8g0342511 53.947 76 35 0 33 108 12 87 3.74e-25 96.3
MsaG046803 MtrunA17_Chr4g0042611 53.247 77 36 0 33 109 12 88 6.05e-25 95.5
MsaG046803 MtrunA17_Chr2g0323321 51.765 85 41 0 29 113 7 91 7.66e-25 95.9
MsaG046803 MtrunA17_Chr6g0454921 42.241 116 66 1 35 150 15 129 8.44e-25 98.6
MsaG046803 MtrunA17_Chr3g0133601 46.602 103 54 1 35 137 37 138 8.66e-25 99.0
MsaG046803 MtrunA17_Chr4g0008551 47.115 104 52 2 35 137 38 139 1.66e-24 100
MsaG046803 MtrunA17_Chr8g0342531 51.282 78 38 0 33 110 12 89 1.87e-24 96.7
MsaG046803 MtrunA17_Chr7g0238631 44.118 102 56 1 35 136 113 213 4.41e-24 101
MsaG046803 MtrunA17_Chr5g0395221 50.649 77 38 0 33 109 12 88 6.00e-24 92.8
MsaG046803 MtrunA17_Chr5g0401731 43.119 109 61 1 35 143 15 122 6.04e-24 99.0
MsaG046803 MtrunA17_Chr6g0460661 38.739 111 65 2 35 144 16 124 1.12e-23 94.4
MsaG046803 MtrunA17_Chr5g0429661 36.800 125 76 2 27 150 114 236 1.86e-23 97.8
MsaG046803 MtrunA17_Chr2g0294811 53.247 77 36 0 33 109 12 88 2.30e-23 92.0
MsaG046803 MtrunA17_Chr5g0425591 43.011 93 52 1 25 116 1 93 4.13e-23 90.9
MsaG046803 MtrunA17_Chr8g0342461 48.101 79 40 1 33 110 12 90 6.29e-23 91.7
MsaG046803 MtrunA17_Chr8g0342471 48.101 79 40 1 33 110 12 90 1.65e-22 90.5
MsaG046803 MtrunA17_Chr7g0238651 40.909 110 63 1 38 145 10 119 2.93e-22 94.7
MsaG046803 MtrunA17_Chr4g0058991 38.931 131 75 3 32 161 206 332 8.26e-22 94.4
MsaG046803 MtrunA17_Chr3g0139671 40.777 103 58 2 35 136 85 185 1.04e-21 94.7
MsaG046803 MtrunA17_Chr4g0053431 42.157 102 58 1 35 136 5 105 1.33e-21 91.3
MsaG046803 MtrunA17_Chr5g0417621 40.566 106 60 2 35 139 134 237 2.25e-21 93.2
MsaG046803 MtrunA17_Chr1g0157731 39.216 102 61 1 35 136 91 191 4.40e-21 92.8
MsaG046803 MtrunA17_Chr3g0125801 40.870 115 65 2 26 139 7 119 5.45e-21 90.1
MsaG046803 MtrunA17_Chr4g0042501 39.623 106 61 2 35 139 105 208 6.54e-21 91.7
MsaG046803 MtrunA17_Chr6g0480581 40.566 106 60 2 35 139 4 107 1.13e-20 88.2
MsaG046803 MtrunA17_Chr3g0117511 39.815 108 62 2 35 141 183 288 4.49e-20 89.4
MsaG046803 MtrunA17_Chr7g0229101 57.971 69 29 0 65 133 4 72 4.83e-20 85.9
MsaG046803 MtrunA17_Chr3g0093811 50.633 79 39 0 65 143 14 92 7.48e-20 86.7
MsaG046803 MtrunA17_Chr7g0254261 33.333 156 96 5 35 187 89 239 9.97e-20 87.4
MsaG046803 MtrunA17_Chr6g0453751 43.011 93 44 2 33 116 20 112 1.18e-19 82.8
MsaG046803 MtrunA17_Chr5g0434901 61.538 65 25 0 67 131 7 71 2.42e-19 81.6
MsaG046803 MtrunA17_Chr6g0460671 35.537 121 75 2 29 148 93 211 5.27e-19 85.5
MsaG046803 MtrunA17_Chr5g0437321 45.263 95 51 1 35 129 19 112 6.13e-19 84.3
MsaG046803 MtrunA17_Chr7g0228531 37.879 132 78 3 27 158 212 339 8.56e-19 85.5
MsaG046803 MtrunA17_Chr7g0229131 52.113 71 34 0 65 135 4 74 6.15e-18 79.3
MsaG046803 MtrunA17_Chr5g0397841 42.105 95 54 1 35 129 110 203 7.25e-18 83.2
MsaG046803 MtrunA17_Chr5g0416341 38.235 102 60 2 38 138 29 128 2.51e-17 81.3
MsaG046803 MtrunA17_Chr8g0362231 38.261 115 65 3 38 151 25 134 9.26e-17 79.7
MsaG046803 MtrunA17_Chr7g0228401 38.372 86 52 1 46 131 290 374 2.16e-15 75.9
MsaG046803 MtrunA17_Chr1g0177901 37.931 87 53 1 45 131 4 89 2.51e-15 73.2
MsaG046803 MtrunA17_Chr1g0193901 45.238 84 44 2 33 114 11 94 6.56e-15 69.3
MsaG046803 MtrunA17_Chr1g0193891 45.238 84 44 2 33 114 11 94 6.56e-15 69.3
MsaG046803 MtrunA17_Chr1g0193871 45.238 84 44 2 33 114 11 94 6.56e-15 69.3
MsaG046803 MtrunA17_Chr1g0193881 45.238 84 44 2 33 114 11 94 6.56e-15 69.3
MsaG046803 MtrunA17_Chr7g0228481 33.333 132 84 3 27 158 212 339 4.55e-14 71.6
MsaG046803 MtrunA17_Chr7g0233061 34.906 106 48 2 35 131 180 273 5.51e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046803 AT2G47190.1 48.679 265 112 5 26 277 13 266 5.77e-81 245
MsaG046803 AT3G06490.1 74.324 148 38 0 19 166 5 152 2.88e-75 233
MsaG046803 AT1G48000.1 67.347 147 47 1 33 178 32 178 4.94e-73 224
MsaG046803 AT5G49620.1 74.468 141 36 0 28 168 21 161 1.52e-71 223
MsaG046803 AT1G68320.1 66.901 142 47 0 33 174 19 160 7.99e-70 217
MsaG046803 AT5G49620.2 67.742 155 36 1 28 168 21 175 7.55e-68 213
MsaG046803 AT1G25340.1 52.020 198 64 4 34 231 19 185 6.87e-65 204
MsaG046803 AT1G25340.2 50.000 198 63 5 34 231 19 180 2.25e-59 190
MsaG046803 AT1G25340.3 50.000 198 63 5 34 231 19 180 3.97e-59 191
MsaG046803 AT3G27810.1 72.897 107 29 0 33 139 20 126 1.54e-57 184
MsaG046803 AT3G01530.1 50.538 186 70 4 11 186 4 177 5.33e-56 179
MsaG046803 AT5G40350.1 72.816 103 28 0 33 135 17 119 3.90e-55 177
MsaG046803 AT3G24310.1 66.667 105 35 0 34 138 19 123 1.99e-49 164
MsaG046803 AT4G13480.1 66.355 107 36 0 32 138 5 111 3.14e-49 164
MsaG046803 AT5G59780.3 63.889 108 39 0 34 141 9 116 2.34e-48 160
MsaG046803 AT3G46130.1 61.607 112 43 0 34 145 10 121 4.34e-48 160
MsaG046803 AT3G30210.1 64.762 105 37 0 34 138 28 132 5.16e-47 159
MsaG046803 AT5G14750.1 60.000 115 46 0 22 136 5 119 3.50e-45 151
MsaG046803 AT5G40330.1 65.049 103 36 0 34 136 13 115 3.50e-44 149
MsaG046803 AT2G32460.1 54.098 122 56 0 17 138 2 123 3.63e-43 154
MsaG046803 AT5G16770.4 52.273 132 61 2 33 162 12 143 1.82e-42 148
MsaG046803 AT5G16770.3 52.273 132 61 2 33 162 12 143 1.82e-42 148
MsaG046803 AT2G32460.2 59.434 106 43 0 33 138 6 111 2.39e-42 151
MsaG046803 AT5G16770.1 52.273 132 61 2 33 162 12 143 3.01e-42 148
MsaG046803 AT5G16770.2 52.273 132 61 2 33 162 12 143 3.01e-42 148
MsaG046803 AT3G02940.2 53.279 122 57 0 29 150 8 129 4.10e-42 147
MsaG046803 AT3G11440.2 56.075 107 47 0 32 138 40 146 5.40e-42 150
MsaG046803 AT3G02940.1 53.279 122 57 0 29 150 8 129 6.17e-42 147
MsaG046803 AT3G02940.3 53.279 122 57 0 29 150 8 129 6.17e-42 147
MsaG046803 AT3G27920.1 63.107 103 38 0 34 136 15 117 7.13e-42 144
MsaG046803 AT4G12350.1 44.737 152 72 2 29 175 8 152 1.04e-41 145
MsaG046803 AT5G52600.1 57.658 111 47 0 27 137 6 116 1.21e-41 142
MsaG046803 AT5G54230.1 55.856 111 49 0 33 143 12 122 1.35e-41 145
MsaG046803 AT1G06180.1 52.500 120 57 0 33 152 12 131 1.64e-41 143
MsaG046803 AT1G22640.1 54.701 117 53 0 33 149 12 128 2.15e-41 143
MsaG046803 AT2G31180.1 56.481 108 47 0 29 136 8 115 3.03e-41 143
MsaG046803 AT3G11440.3 56.075 107 47 0 32 138 40 146 3.21e-41 149
MsaG046803 AT3G11440.4 56.075 107 47 0 32 138 40 146 3.21e-41 149
MsaG046803 AT3G11440.1 56.075 107 47 0 32 138 40 146 3.21e-41 149
MsaG046803 AT4G05100.1 54.054 111 51 0 33 143 13 123 3.45e-41 145
MsaG046803 AT5G55020.1 54.701 117 53 0 23 139 16 132 5.02e-41 148
MsaG046803 AT5G65230.1 50.820 122 60 0 29 150 8 129 5.47e-41 144
MsaG046803 AT4G34990.1 61.765 102 39 0 35 136 14 115 5.85e-41 143
MsaG046803 AT1G66230.1 54.783 115 52 0 29 143 8 122 6.10e-41 143
MsaG046803 AT4G26930.1 53.719 121 56 0 19 139 5 125 6.23e-41 145
MsaG046803 AT5G06100.1 54.545 110 50 0 29 138 28 137 6.34e-41 147
MsaG046803 AT5G10280.1 52.459 122 58 0 29 150 8 129 6.61e-41 144
MsaG046803 AT5G15310.4 54.783 115 52 0 29 143 8 122 1.44e-40 141
MsaG046803 AT5G15310.1 50.394 127 63 0 29 155 8 134 1.66e-40 143
MsaG046803 AT5G15310.2 50.394 127 63 0 29 155 8 134 1.93e-40 142
MsaG046803 AT4G28110.1 55.769 104 46 0 33 136 12 115 2.12e-40 141
MsaG046803 AT5G06100.5 54.545 110 50 0 29 138 28 137 2.39e-40 146
MsaG046803 AT5G06100.2 54.545 110 50 0 29 138 28 137 2.39e-40 146
MsaG046803 AT5G06100.3 54.545 110 50 0 29 138 28 137 2.39e-40 146
MsaG046803 AT5G06100.4 54.545 110 50 0 29 138 28 137 2.39e-40 146
MsaG046803 AT4G21440.1 44.737 152 73 2 33 175 12 161 2.90e-40 143
MsaG046803 AT1G34670.1 45.638 149 80 1 33 181 12 159 4.32e-40 143
MsaG046803 AT3G01140.2 51.220 123 60 0 29 151 8 130 4.56e-40 142
MsaG046803 AT3G13540.1 53.279 122 57 0 31 152 21 142 5.14e-40 139
MsaG046803 AT3G47600.1 53.846 117 52 1 29 143 8 124 5.42e-40 142
MsaG046803 AT4G22680.1 50.000 120 60 0 29 148 8 127 7.71e-40 139
MsaG046803 AT3G53200.1 53.982 113 50 1 24 136 2 112 8.38e-40 139
MsaG046803 AT3G23250.1 37.374 198 102 2 29 226 8 183 9.58e-40 140
MsaG046803 AT3G01140.1 51.220 123 60 0 29 151 51 173 1.29e-39 142
MsaG046803 AT5G26660.1 45.139 144 79 0 33 176 12 155 2.71e-39 140
MsaG046803 AT2G26960.1 51.261 119 57 1 33 151 20 137 3.34e-39 142
MsaG046803 AT3G61250.1 49.167 120 61 0 29 148 8 127 3.79e-39 139
MsaG046803 AT2G16720.1 58.654 104 43 0 33 136 12 115 4.02e-39 138
MsaG046803 AT3G27810.2 77.027 74 17 0 66 139 4 77 4.27e-39 135
MsaG046803 AT4G38620.1 58.824 102 42 0 35 136 14 115 5.09e-39 138
MsaG046803 AT2G47460.1 38.462 208 112 4 33 230 12 213 5.80e-39 140
MsaG046803 AT1G79180.1 54.054 111 51 0 29 139 10 120 6.04e-39 138
MsaG046803 AT3G13890.2 54.808 104 47 0 33 136 12 115 8.31e-39 139
MsaG046803 AT1G57560.1 54.054 111 51 0 33 143 12 122 8.72e-39 138
MsaG046803 AT1G57560.2 54.054 111 51 0 33 143 12 122 8.93e-39 137
MsaG046803 AT4G17785.1 52.542 118 56 0 33 150 13 130 1.17e-38 139
MsaG046803 AT4G17785.2 52.542 118 56 0 33 150 13 130 1.22e-38 139
MsaG046803 AT1G09540.1 50.862 116 57 0 33 148 12 127 1.41e-38 139
MsaG046803 AT5G16600.1 52.174 115 55 0 29 143 8 122 1.47e-38 138
MsaG046803 AT1G35515.1 56.731 104 45 0 33 136 12 115 1.84e-38 134
MsaG046803 AT4G37780.1 56.881 109 46 1 29 136 8 116 2.84e-38 137
MsaG046803 AT5G12870.1 54.630 108 49 0 33 140 18 125 3.42e-38 135
MsaG046803 AT1G08810.1 52.101 119 57 0 29 147 8 126 4.41e-38 135
MsaG046803 AT5G62470.2 54.630 108 49 0 33 140 12 119 5.30e-38 137
MsaG046803 AT5G35550.1 48.889 135 58 3 21 147 5 136 6.20e-38 134
MsaG046803 AT4G09460.1 57.843 102 43 0 35 136 14 115 1.07e-37 133
MsaG046803 AT1G16490.1 51.852 108 52 0 29 136 10 117 1.08e-37 134
MsaG046803 AT5G14340.1 50.833 120 59 0 29 148 20 139 1.24e-37 134
MsaG046803 AT1G74650.1 55.046 109 49 0 33 141 12 120 1.37e-37 135
MsaG046803 AT5G60890.1 45.255 137 74 1 33 168 12 148 2.22e-37 134
MsaG046803 AT3G62610.1 57.692 104 44 0 33 136 12 115 3.11e-37 135
MsaG046803 AT5G07690.1 54.369 103 47 0 33 135 12 114 4.80e-37 134
MsaG046803 AT5G40350.2 78.571 70 15 0 66 135 5 74 5.30e-37 129
MsaG046803 AT1G63910.1 54.206 107 49 0 33 139 12 118 5.35e-37 135
MsaG046803 AT1G18570.1 55.660 106 47 0 31 136 11 116 5.44e-37 134
MsaG046803 AT5G62320.1 35.556 225 101 4 29 246 9 196 6.87e-37 131
MsaG046803 AT3G28910.1 50.420 119 59 0 29 147 8 126 9.21e-37 133
MsaG046803 AT3G12720.1 50.962 104 51 0 33 136 22 125 9.40e-37 132
MsaG046803 AT4G01680.3 54.717 106 48 0 33 138 12 117 2.04e-36 130
MsaG046803 AT5G61420.2 42.857 147 81 1 33 179 12 155 2.10e-36 133
MsaG046803 AT5G49330.1 54.630 108 49 0 29 136 8 115 2.33e-36 132
MsaG046803 AT5G07700.1 52.885 104 49 0 33 136 12 115 2.39e-36 132
MsaG046803 AT5G07700.2 52.885 104 49 0 33 136 12 115 2.39e-36 132
MsaG046803 AT1G56160.1 51.852 108 52 0 29 136 10 117 4.02e-36 130
MsaG046803 AT5G62470.1 54.630 108 48 1 33 140 12 118 5.07e-36 132
MsaG046803 AT4G01680.1 54.717 106 48 0 33 138 12 117 5.72e-36 131
MsaG046803 AT3G13890.1 50.442 113 47 1 33 136 12 124 7.09e-36 132
MsaG046803 AT3G28470.1 53.398 103 48 0 29 131 8 110 1.37e-35 130
MsaG046803 AT3G08500.1 53.774 106 49 0 33 138 30 135 1.40e-35 130
MsaG046803 AT3G12820.1 50.926 108 53 0 29 136 10 117 3.42e-35 127
MsaG046803 AT1G74080.1 54.369 103 47 0 33 135 12 114 4.86e-35 129
MsaG046803 AT5G57620.1 50.833 120 58 1 29 147 8 127 5.07e-35 129
MsaG046803 AT5G56110.1 50.450 111 55 0 33 143 12 122 1.58e-34 127
MsaG046803 AT3G49690.1 54.128 109 49 1 29 136 8 116 1.98e-34 127
MsaG046803 AT5G23000.1 51.376 109 52 1 29 136 8 116 2.03e-34 127
MsaG046803 AT1G74430.1 48.276 116 60 0 33 148 12 127 2.19e-34 125
MsaG046803 AT3G46130.3 66.667 81 27 0 65 145 9 89 5.58e-34 123
MsaG046803 AT5G65790.1 53.211 109 50 1 29 136 8 116 8.13e-34 126
MsaG046803 AT5G52260.1 50.000 116 54 1 34 145 13 128 2.29e-33 123
MsaG046803 AT3G48920.1 51.961 102 49 0 34 135 19 120 2.57e-33 122
MsaG046803 AT3G46130.4 66.250 80 27 0 66 145 20 99 2.59e-33 122
MsaG046803 AT5G59780.2 68.421 76 24 0 66 141 20 95 2.86e-33 121
MsaG046803 AT4G01680.2 49.153 118 48 1 33 138 12 129 1.22e-32 123
MsaG046803 AT2G36890.1 51.376 109 52 1 29 136 8 116 1.25e-32 122
MsaG046803 AT4G25560.1 51.456 103 50 0 34 136 11 113 1.43e-32 121
MsaG046803 AT2G36890.2 51.376 109 52 1 29 136 49 157 1.99e-32 122
MsaG046803 AT3G60460.1 49.541 109 54 1 33 140 11 119 2.02e-32 121
MsaG046803 AT1G79180.2 41.667 144 51 1 29 139 10 153 2.10e-32 122
MsaG046803 AT1G66370.1 49.091 110 56 0 33 142 8 117 5.73e-31 116
MsaG046803 AT1G18710.1 50.962 104 51 0 33 136 12 115 6.74e-31 116
MsaG046803 AT3G53200.2 64.789 71 25 0 66 136 9 79 6.44e-29 109
MsaG046803 AT2G26950.1 44.231 104 58 0 32 135 15 118 1.84e-28 112
MsaG046803 AT1G66380.1 50.962 104 51 0 33 136 8 111 3.86e-28 105
MsaG046803 AT1G56650.1 38.953 172 94 4 33 204 8 168 9.61e-28 107
MsaG046803 AT1G66390.1 50.962 104 51 0 33 136 8 111 9.77e-27 105
MsaG046803 AT5G26660.2 45.045 111 61 0 66 176 14 124 1.42e-26 106
MsaG046803 AT5G35550.2 54.737 95 35 2 61 147 45 139 2.83e-26 104
MsaG046803 AT5G14750.3 64.706 68 24 0 69 136 18 85 5.17e-26 100
MsaG046803 AT4G37260.1 34.409 186 112 3 35 216 13 192 2.53e-25 102
MsaG046803 AT3G12820.2 61.765 68 26 0 69 136 2 69 1.87e-24 97.4
MsaG046803 AT3G47600.2 55.000 80 34 1 66 143 39 118 3.09e-24 100
MsaG046803 AT3G27785.1 37.405 131 74 2 33 156 187 316 5.79e-24 100
MsaG046803 AT5G02320.1 43.137 102 57 1 35 136 127 227 1.33e-23 100
MsaG046803 AT5G02320.2 43.137 102 57 1 35 136 127 227 1.33e-23 100
MsaG046803 AT1G69560.1 36.735 147 83 4 12 153 80 221 1.57e-23 98.2
MsaG046803 AT5G02320.3 43.137 102 57 1 35 136 67 167 1.87e-23 99.8
MsaG046803 AT1G69560.2 36.842 133 77 3 12 139 96 226 1.91e-23 98.2
MsaG046803 AT3G29020.1 41.593 113 65 1 27 139 57 168 3.29e-23 95.5
MsaG046803 AT2G23290.1 45.098 102 55 1 35 136 13 113 6.24e-23 96.3
MsaG046803 AT3G29020.2 41.593 113 65 1 27 139 59 170 9.00e-23 95.5
MsaG046803 AT3G09230.1 50.526 95 46 1 35 129 55 148 1.09e-22 96.7
MsaG046803 AT3G09370.2 42.718 103 58 1 35 137 135 236 1.22e-22 97.4
MsaG046803 AT3G09370.1 42.718 103 58 1 35 137 130 231 1.22e-22 97.4
MsaG046803 AT3G09370.3 42.718 103 58 1 35 137 143 244 1.43e-22 97.4
MsaG046803 AT5G11510.3 41.176 102 59 1 35 136 81 181 1.89e-22 97.4
MsaG046803 AT5G11510.1 41.176 102 59 1 35 136 81 181 1.89e-22 97.4
MsaG046803 AT5G11510.4 41.176 102 59 1 35 136 81 181 1.89e-22 97.4
MsaG046803 AT5G11510.2 41.176 102 59 1 35 136 81 181 2.02e-22 97.4
MsaG046803 AT5G11510.5 41.176 102 59 1 35 136 81 181 2.05e-22 97.1
MsaG046803 AT4G18770.1 38.462 117 69 2 26 142 210 323 2.51e-22 95.9
MsaG046803 AT1G17950.1 42.727 110 60 2 31 139 1 108 5.89e-22 92.4
MsaG046803 AT1G26780.1 39.450 109 63 2 32 139 95 201 6.48e-22 92.8
MsaG046803 AT1G26780.2 39.450 109 63 2 32 139 95 201 9.54e-22 93.6
MsaG046803 AT5G40360.1 40.816 98 57 1 32 129 155 251 2.11e-21 92.8
MsaG046803 AT2G39880.1 42.453 106 58 2 35 139 50 153 2.16e-21 92.8
MsaG046803 AT1G73410.1 41.818 110 61 2 31 139 2 109 2.63e-21 90.5
MsaG046803 AT3G55730.1 42.991 107 58 2 35 140 56 160 2.76e-21 92.8
MsaG046803 AT1G73410.2 43.396 106 57 2 35 139 6 109 3.98e-21 89.0
MsaG046803 AT5G17800.1 38.739 111 67 1 29 139 87 196 7.03e-21 90.9
MsaG046803 AT5G11050.1 33.951 162 97 4 33 187 103 261 1.54e-20 90.9
MsaG046803 AT5G58850.1 39.815 108 62 2 35 141 105 210 1.84e-20 90.9
MsaG046803 AT4G32730.5 37.255 102 63 1 35 136 87 187 3.71e-20 90.5
MsaG046803 AT4G32730.4 37.255 102 63 1 35 136 87 187 3.71e-20 90.5
MsaG046803 AT4G32730.3 37.255 102 63 1 35 136 87 187 3.71e-20 90.5
MsaG046803 AT4G32730.2 37.255 102 63 1 35 136 87 187 3.71e-20 90.5
MsaG046803 AT4G32730.1 37.255 102 63 1 35 136 87 187 4.33e-20 90.5
MsaG046803 AT2G25230.1 42.424 99 56 1 33 131 24 121 6.07e-20 86.7
MsaG046803 AT4G33450.1 36.508 126 79 1 34 159 18 142 8.88e-20 86.3
MsaG046803 AT3G50060.1 43.158 95 53 1 35 129 6 99 1.05e-19 87.0
MsaG046803 AT5G67300.1 41.176 102 59 1 35 136 6 106 1.71e-19 86.7
MsaG046803 AT1G22640.3 53.521 71 33 0 79 149 1 71 1.75e-19 84.3
MsaG046803 AT2G37630.1 39.623 106 62 1 38 141 7 112 3.78e-19 86.7
MsaG046803 AT5G14750.4 60.345 58 23 0 79 136 1 58 7.08e-19 81.3
MsaG046803 AT5G14750.2 60.345 58 23 0 79 136 1 58 7.08e-19 81.3
MsaG046803 AT5G59780.1 66.667 51 17 0 91 141 1 51 2.22e-18 80.9
MsaG046803 AT3G46130.2 63.636 55 20 0 91 145 1 55 2.56e-18 81.3
MsaG046803 AT3G23250.2 33.108 148 77 2 79 226 1 126 3.30e-18 81.6
MsaG046803 AT1G66380.3 57.746 71 30 0 66 136 8 78 3.52e-18 78.6
MsaG046803 AT1G18960.1 33.945 109 69 2 35 143 10 115 5.38e-17 79.7
MsaG046803 AT5G40430.1 42.000 100 54 3 33 131 52 148 9.58e-17 78.2
MsaG046803 AT1G71030.2 44.872 78 43 0 72 149 5 82 1.43e-16 76.3
MsaG046803 AT1G71030.1 44.872 78 43 0 72 149 19 96 1.78e-16 76.3
MsaG046803 AT1G14350.2 34.959 123 73 3 38 158 28 145 2.13e-16 79.0
MsaG046803 AT1G14350.1 34.959 123 73 3 38 158 28 145 2.13e-16 79.0
MsaG046803 AT5G39700.1 32.450 151 91 5 4 146 20 167 2.68e-16 75.5
MsaG046803 AT1G66380.2 47.436 78 41 0 33 110 8 85 4.31e-16 72.8
MsaG046803 AT4G00540.2 34.188 117 73 2 33 146 101 216 1.30e-15 76.6
MsaG046803 AT4G00540.1 34.188 117 73 2 33 146 99 214 1.84e-15 76.3
MsaG046803 AT2G02820.1 34.375 128 71 3 38 157 33 155 4.06e-15 75.5
MsaG046803 AT2G02820.2 34.375 128 71 3 38 157 33 155 4.12e-15 75.5
MsaG046803 AT2G02820.3 34.375 128 71 3 38 157 33 155 4.27e-15 74.7
MsaG046803 AT4G25560.2 56.522 46 20 0 91 136 2 47 1.72e-11 62.8
MsaG046803 AT3G18100.2 30.216 139 90 2 19 151 317 454 5.01e-11 63.2
MsaG046803 AT3G18100.4 30.216 139 90 2 19 151 369 506 5.25e-11 63.2
MsaG046803 AT3G18100.3 30.216 139 90 2 19 151 482 619 5.55e-11 63.2
MsaG046803 AT3G18100.1 30.216 139 90 2 19 151 530 667 6.54e-11 63.2

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig1 gene 2449027 2450165 2449027 ID=MsaG046803
Contig1 mRNA 2449027 2450165 2449027 ID=MsaT046803.1;Parent=MsaG046803
Contig1 exon 2449027 2449352 2449027 ID=MsaT046803.1.exon1;Parent=MsaT046803.1
Contig1 CDS 2449027 2449352 2449027 ID=cds.MsaT046803.1;Parent=MsaT046803.1
Contig1 exon 2449655 2450165 2449655 ID=MsaT046803.1.exon2;Parent=MsaT046803.1
Contig1 CDS 2449655 2450165 2449655 ID=cds.MsaT046803.1;Parent=MsaT046803.1
Gene Sequence

>MsaT046803.1

ATGGATACTAATTACAAAACCAATATTCATGTAATGAGGAGTTTTTCAGATTGTGGTTCATCAGTAACAAATGTAAGTCAAGAAGATACTATGGTGATAAAGAAAGGTCCATGGACAGAAGAGGAGGATACTATTCTGATGAACTATGTGGCAGTCCACGGAGATGGTCACTGGAACTCCGTCGCTCGCTGTTCGGGTCTAAAGAGAACCGGGAAAAGCTGCAGATTAAGATGGTTGAACTACTTACGTCCAAATGTTCGTCGAGGGAACATCACTCTCCAAGAACAAGTCTTGATTCTTGATCTTCATTCCCGTTGGGGCAATCGGTGGTCTAAAATAGCGGAACAATTACCGGGAAGAACGGACAATGAAATAAAGAACTATTGGAGAACAAGAGTGGTGAAGCAAGCTAGGCAACTAAAATGTGATGTAAACAGTCAACAGTTTAGGGACACATTGCGTTTAGTATGGATTCCACGTCTCATCGAGAGAATCCAAACTTCTCGTGCAACTGTAGATACTAATTCCTATAGCCAAGGACAAATCACCACCTGCAACAATCCTAAAGCTCATAGTGAAACTTGTGGGGCAAATGCAAATCCTCCCATGTTGCAGTCAGAGGTTTCATCGTACTCGTCAGGGGTTGATGTTCAAGTAGAATCAAACGTATCTTACAATTTAATGGATTGTGCGGAACTGGGATCCACGTTGCAGGAGTGGAACTGCTTAGACTCAAACATCCAAGAATTTGAACAGAGCAATGTTTTTGGTGGTTCGGAATTGTGGACAGATGAAAATATATGGTTCTTGCAGCAGCAACTTGCTGATGATTTATGA
Protein sequence

>MsaT046803.1

MDTNYKTNIHVMRSFSDCGSSVTNVSQEDTMVIKKGPWTEEEDTILMNYVAVHGDGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQVLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSQQFRDTLRLVWIPRLIERIQTSRATVDTNSYSQGQITTCNNPKAHSETCGANANPPMLQSEVSSYSSGVDVQVESNVSYNLMDCAELGSTLQEWNCLDSNIQEFEQSNVFGGSELWTDENIWFLQQQLADDL*