AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046816


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046816 MtrunA17_Chr1g0194481 89.091 330 28 3 1 327 1 325 0.0 523
MsaG046816 MtrunA17_Chr7g0270191 58.654 312 81 17 27 327 21 295 2.21e-88 266
MsaG046816 MtrunA17_Chr2g0294231 47.604 313 124 10 44 327 71 372 1.27e-55 185
MsaG046816 MtrunA17_Chr5g0418781 47.236 199 70 5 134 323 98 270 2.99e-45 155
MsaG046816 MtrunA17_Chr4g0051881 46.119 219 91 7 114 324 133 332 7.33e-44 153
MsaG046816 MtrunA17_Chr5g0443131 80.769 78 15 0 146 223 143 220 2.72e-41 145
MsaG046816 MtrunA17_Chr4g0068541 39.301 229 74 7 144 319 192 408 4.70e-38 140
MsaG046816 MtrunA17_Chr7g0248721 47.742 155 62 5 67 217 58 197 4.06e-32 119
MsaG046816 MtrunA17_Chr7g0224801 71.429 70 20 0 148 217 81 150 2.67e-31 115
MsaG046816 MtrunA17_Chr1g0150801 56.522 92 40 0 127 218 69 160 4.89e-31 114
MsaG046816 MtrunA17_Chr3g0129361 68.493 73 23 0 144 216 128 200 9.52e-31 115
MsaG046816 MtrunA17_Chr5g0418191 37.374 198 105 6 37 219 186 379 1.32e-30 120
MsaG046816 MtrunA17_Chr5g0418191 58.065 62 23 2 160 219 151 211 8.99e-16 77.8
MsaG046816 MtrunA17_Chr8g0335811 62.651 83 31 0 134 216 128 210 7.66e-30 113
MsaG046816 MtrunA17_Chr4g0042831 48.855 131 52 3 104 219 207 337 9.18e-30 117
MsaG046816 MtrunA17_Chr4g0042831 51.562 64 31 0 160 223 145 208 3.10e-16 79.0
MsaG046816 MtrunA17_Chr7g0218081 61.728 81 31 0 145 225 395 475 1.17e-29 118
MsaG046816 MtrunA17_Chr7g0218081 46.809 94 34 2 145 223 198 290 3.20e-17 82.4
MsaG046816 MtrunA17_Chr8g0383351 67.568 74 23 1 144 216 143 216 4.70e-29 111
MsaG046816 MtrunA17_Chr3g0101131 51.887 106 50 1 115 220 371 475 1.11e-28 116
MsaG046816 MtrunA17_Chr3g0101131 56.522 69 28 2 160 228 243 309 1.71e-16 80.1
MsaG046816 MtrunA17_Chr5g0445311 56.977 86 37 0 140 225 344 429 6.70e-28 113
MsaG046816 MtrunA17_Chr5g0445311 50.000 84 41 1 145 228 185 267 1.43e-16 80.5
MsaG046816 MtrunA17_Chr3g0079691 50.459 109 53 1 117 225 453 560 7.54e-28 114
MsaG046816 MtrunA17_Chr3g0079691 37.410 139 83 2 97 232 214 351 1.46e-18 86.7
MsaG046816 MtrunA17_Chr1g0188941 54.545 77 35 0 144 220 35 111 4.17e-27 102
MsaG046816 MtrunA17_Chr3g0129321 44.737 114 59 1 113 222 67 180 4.39e-27 105
MsaG046816 MtrunA17_Chr8g0383251 42.857 112 64 0 111 222 59 170 9.03e-27 104
MsaG046816 MtrunA17_Chr3g0106491 53.846 91 42 0 144 234 349 439 1.53e-26 109
MsaG046816 MtrunA17_Chr3g0106491 44.444 81 40 2 143 223 185 260 3.53e-15 76.3
MsaG046816 MtrunA17_Chr7g0263531 47.115 104 55 0 116 219 317 420 6.84e-26 107
MsaG046816 MtrunA17_Chr7g0263531 46.341 82 38 2 161 242 190 265 5.80e-16 78.2
MsaG046816 MtrunA17_Chr7g0243891 48.485 99 43 1 144 234 358 456 1.07e-25 107
MsaG046816 MtrunA17_Chr7g0243891 56.250 64 27 1 160 223 216 278 2.38e-16 79.7
MsaG046816 MtrunA17_Chr8g0386241 46.875 96 45 1 128 217 65 160 1.11e-25 101
MsaG046816 MtrunA17_Chr4g0074001 34.810 158 88 1 103 245 302 459 1.81e-25 106
MsaG046816 MtrunA17_Chr7g0249311 47.573 103 53 1 119 220 350 452 2.99e-25 106
MsaG046816 MtrunA17_Chr7g0249311 59.375 64 25 1 160 223 179 241 1.99e-17 83.2
MsaG046816 MtrunA17_Chr5g0432161 46.429 112 56 1 118 225 375 486 4.58e-25 105
MsaG046816 MtrunA17_Chr5g0432161 55.000 60 26 1 160 219 244 302 2.25e-14 73.9
MsaG046816 MtrunA17_Chr4g0004911 57.895 76 32 0 144 219 320 395 5.97e-25 104
MsaG046816 MtrunA17_Chr4g0004911 54.688 64 29 0 160 223 184 247 4.98e-18 84.7
MsaG046816 MtrunA17_Chr7g0249301 55.844 77 34 0 144 220 276 352 1.26e-24 102
MsaG046816 MtrunA17_Chr7g0249301 55.385 65 28 1 159 223 61 124 5.16e-17 80.9
MsaG046816 MtrunA17_Chr3g0099641 32.934 167 96 4 103 256 182 345 1.00e-22 98.2
MsaG046816 MtrunA17_Chr7g0238921 66.667 57 19 0 160 216 124 180 4.60e-22 94.7
MsaG046816 MtrunA17_Chr2g0322391 40.517 116 65 2 144 258 333 445 8.20e-22 96.3
MsaG046816 MtrunA17_Chr2g0333851 53.247 77 33 2 147 220 154 230 1.05e-21 93.6
MsaG046816 MtrunA17_Chr4g0075201 51.948 77 36 1 144 219 251 327 2.23e-21 94.4
MsaG046816 MtrunA17_Chr2g0288871 51.948 77 36 1 144 219 289 365 5.65e-21 93.6
MsaG046816 MtrunA17_Chr6g0485431 46.835 79 41 1 146 223 140 218 1.04e-20 91.7
MsaG046816 MtrunA17_Chr7g0270831 39.316 117 67 2 107 219 160 276 1.10e-20 92.0
MsaG046816 MtrunA17_Chr5g0447701 55.263 76 34 0 145 220 237 312 1.35e-20 91.7
MsaG046816 MtrunA17_Chr5g0447701 40.909 110 58 4 160 265 92 198 1.88e-13 70.5
MsaG046816 MtrunA17_Chr4g0051181 50.649 77 37 1 144 219 227 303 3.71e-20 90.9
MsaG046816 MtrunA17_Chr2g0293481 55.072 69 29 2 161 228 268 335 6.95e-20 90.1
MsaG046816 MtrunA17_Chr7g0270051 52.055 73 34 1 161 232 54 126 1.10e-19 87.0
MsaG046816 MtrunA17_Chr8g0387501 50.704 71 33 2 159 228 128 197 1.69e-19 86.7
MsaG046816 MtrunA17_Chr8g0348311 52.174 69 31 2 161 228 156 223 2.13e-19 87.4
MsaG046816 MtrunA17_Chr7g0216891 44.762 105 52 2 119 217 173 277 2.24e-19 89.0
MsaG046816 MtrunA17_Chr5g0401821 45.783 83 44 1 135 216 174 256 3.88e-19 85.5
MsaG046816 MtrunA17_Chr1g0147881 38.000 100 61 1 118 216 220 319 6.10e-19 86.3
MsaG046816 MtrunA17_Chr1g0150281 39.604 101 56 2 148 243 124 224 6.18e-19 85.5
MsaG046816 MtrunA17_Chr4g0001361 54.839 62 27 1 159 219 161 222 7.41e-19 85.5
MsaG046816 MtrunA17_Chr2g0302391 34.641 153 76 5 144 291 195 328 1.15e-18 86.3
MsaG046816 MtrunA17_Chr4g0060271 38.983 118 67 3 107 219 198 315 1.36e-18 86.7
MsaG046816 MtrunA17_Chr7g0248691 38.938 113 56 4 129 236 130 234 1.60e-18 84.7
MsaG046816 MtrunA17_Chr1g0189391 50.704 71 34 1 147 216 84 154 2.82e-18 84.3
MsaG046816 MtrunA17_Chr4g0025051 44.872 78 42 1 147 223 322 399 4.75e-18 84.7
MsaG046816 MtrunA17_Chr3g0136961 51.471 68 30 2 158 222 136 203 5.19e-18 82.8
MsaG046816 MtrunA17_Chr4g0025061 46.154 78 41 1 147 223 347 424 8.20e-18 84.3
MsaG046816 MtrunA17_Chr3g0139021 41.304 92 53 1 126 216 280 371 3.82e-17 81.6
MsaG046816 MtrunA17_Chr4g0071521 39.362 94 54 2 134 226 221 312 4.36e-17 80.5
MsaG046816 MtrunA17_Chr1g0150271 41.860 86 46 2 159 243 100 182 4.79e-17 79.3
MsaG046816 MtrunA17_Chr4g0053281 45.238 84 43 2 134 216 242 323 8.62e-17 80.1
MsaG046816 MtrunA17_Chr8g0379461 50.000 60 29 1 161 219 77 136 1.60e-16 77.8
MsaG046816 MtrunA17_Chr2g0284321 48.333 60 30 1 161 219 36 95 3.09e-16 76.3
MsaG046816 MtrunA17_Chr2g0289181 44.286 70 38 1 160 228 14 83 3.63e-16 76.6
MsaG046816 MtrunA17_Chr1g0202461 49.275 69 33 2 161 228 262 329 9.76e-16 77.4
MsaG046816 MtrunA17_Chr7g0228941 54.237 59 26 1 161 218 53 111 1.11e-15 72.4
MsaG046816 MtrunA17_Chr5g0447711 46.053 76 41 0 145 220 215 290 1.89e-15 75.9
MsaG046816 MtrunA17_Chr5g0447711 30.345 145 80 4 160 295 83 215 7.87e-12 65.1
MsaG046816 MtrunA17_Chr8g0387981 34.507 142 75 4 82 215 59 190 2.47e-15 75.9
MsaG046816 MtrunA17_Chr1g0184691 50.877 57 27 1 161 216 294 350 5.83e-15 74.7
MsaG046816 MtrunA17_Chr2g0319961 50.000 60 29 1 161 219 81 140 1.11e-14 72.8
MsaG046816 MtrunA17_Chr5g0432071 49.206 63 31 1 160 222 104 165 1.05e-13 69.3
MsaG046816 MtrunA17_Chr2g0315361 35.398 113 70 1 106 215 94 206 1.56e-13 70.1
MsaG046816 MtrunA17_Chr3g0126391 51.667 60 26 1 159 215 132 191 1.78e-13 70.5
MsaG046816 MtrunA17_Chr7g0244981 50.847 59 26 1 160 215 122 180 2.94e-13 68.9
MsaG046816 MtrunA17_Chr4g0024391 37.179 78 48 1 147 223 216 293 3.58e-13 70.1
MsaG046816 MtrunA17_Chr7g0275531 39.326 89 51 1 130 215 88 176 4.24e-13 68.9
MsaG046816 MtrunA17_Chr8g0347251 38.043 92 49 2 132 215 103 194 5.98e-13 68.9
MsaG046816 MtrunA17_Chr7g0244971 46.667 60 29 1 159 215 122 181 5.10e-12 65.5
MsaG046816 MtrunA17_Chr2g0315381 38.235 102 51 3 123 215 104 202 7.18e-12 65.5
MsaG046816 MtrunA17_Chr1g0188961 41.935 62 36 0 180 241 3 64 1.30e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046816 AT2G47260.1 47.720 329 131 8 31 327 18 337 6.95e-69 218
MsaG046816 AT4G18170.1 77.000 100 23 0 124 223 136 235 1.47e-50 171
MsaG046816 AT5G49520.1 46.718 259 113 7 79 323 137 384 1.89e-49 170
MsaG046816 AT1G29860.1 51.087 184 68 4 144 327 120 281 2.84e-49 166
MsaG046816 AT3G62340.1 36.877 301 147 7 27 327 19 276 4.08e-46 158
MsaG046816 AT1G69310.4 63.478 115 36 1 108 216 89 203 3.47e-43 150
MsaG046816 AT1G69310.2 63.478 115 36 1 108 216 89 203 3.47e-43 150
MsaG046816 AT1G69310.1 63.478 115 36 1 108 216 89 203 3.47e-43 150
MsaG046816 AT5G46350.1 77.647 85 18 1 146 229 169 253 4.84e-43 151
MsaG046816 AT1G69310.3 60.000 115 36 2 108 216 89 199 1.38e-37 135
MsaG046816 AT4G39410.1 58.654 104 41 2 133 234 195 298 3.91e-34 127
MsaG046816 AT2G03340.1 44.375 160 79 3 68 225 329 480 3.46e-32 125
MsaG046816 AT2G03340.1 61.667 60 22 1 160 219 250 308 8.32e-17 81.6
MsaG046816 AT5G13080.1 70.423 71 21 0 147 217 54 124 4.39e-32 117
MsaG046816 AT2G46130.1 66.234 77 26 0 141 217 11 87 9.09e-32 115
MsaG046816 AT2G44745.1 63.095 84 31 0 133 216 118 201 7.56e-31 116
MsaG046816 AT3G01970.1 68.571 70 22 0 147 216 52 121 1.09e-30 114
MsaG046816 AT5G41570.1 59.341 91 34 1 130 217 65 155 1.98e-30 114
MsaG046816 AT1G13960.1 46.281 121 63 1 101 219 348 468 2.68e-30 120
MsaG046816 AT1G13960.1 60.000 60 23 1 160 219 229 287 9.40e-17 81.3
MsaG046816 AT1G13960.2 47.581 124 62 2 99 219 192 315 3.02e-30 118
MsaG046816 AT1G13960.2 60.000 60 23 1 160 219 76 134 9.41e-17 80.5
MsaG046816 AT5G07100.2 43.511 131 66 1 94 224 83 205 2.44e-29 112
MsaG046816 AT5G07100.2 46.970 66 35 0 160 225 24 89 1.95e-14 71.6
MsaG046816 AT5G07100.4 43.511 131 66 1 94 224 83 205 2.44e-29 112
MsaG046816 AT5G07100.4 46.970 66 35 0 160 225 24 89 1.95e-14 71.6
MsaG046816 AT5G07100.5 43.511 131 66 1 94 224 83 205 2.44e-29 112
MsaG046816 AT5G07100.5 46.970 66 35 0 160 225 24 89 1.95e-14 71.6
MsaG046816 AT5G07100.3 43.511 131 66 1 94 224 83 205 2.44e-29 112
MsaG046816 AT5G07100.3 46.970 66 35 0 160 225 24 89 1.95e-14 71.6
MsaG046816 AT1G64000.1 67.606 71 23 0 147 217 101 171 4.22e-29 111
MsaG046816 AT5G07100.1 43.846 130 65 1 94 223 176 297 1.01e-28 113
MsaG046816 AT5G07100.1 51.667 60 29 0 160 219 117 176 4.21e-14 72.4
MsaG046816 AT4G26640.5 40.217 184 93 6 97 273 144 317 1.34e-28 114
MsaG046816 AT4G26640.5 54.286 70 31 1 160 229 35 103 6.77e-17 81.3
MsaG046816 AT4G26640.6 40.217 184 93 6 97 273 144 317 1.34e-28 114
MsaG046816 AT4G26640.6 54.286 70 31 1 160 229 35 103 6.77e-17 81.3
MsaG046816 AT4G26640.4 40.217 184 93 6 97 273 144 317 1.34e-28 114
MsaG046816 AT4G26640.4 54.286 70 31 1 160 229 35 103 6.77e-17 81.3
MsaG046816 AT4G26640.3 40.217 184 93 6 97 273 144 317 1.34e-28 114
MsaG046816 AT4G26640.3 54.286 70 31 1 160 229 35 103 6.77e-17 81.3
MsaG046816 AT2G38470.1 43.885 139 69 3 103 232 296 434 1.76e-28 115
MsaG046816 AT2G38470.1 58.333 60 24 1 160 219 184 242 8.43e-15 75.5
MsaG046816 AT5G26170.1 63.889 72 26 0 147 218 100 171 1.92e-28 108
MsaG046816 AT4G26640.7 45.185 135 70 2 97 230 280 411 4.48e-28 114
MsaG046816 AT4G26640.7 54.286 70 31 1 160 229 171 239 1.41e-16 80.9
MsaG046816 AT4G26640.1 45.185 135 70 2 97 230 248 379 4.67e-28 114
MsaG046816 AT4G26640.1 54.286 70 31 1 160 229 139 207 1.25e-16 80.9
MsaG046816 AT4G26640.2 40.437 183 92 6 98 273 321 493 6.42e-28 114
MsaG046816 AT4G26640.2 54.286 70 31 1 160 229 211 279 1.40e-16 80.9
MsaG046816 AT3G01080.1 64.000 75 27 0 145 219 291 365 6.17e-27 110
MsaG046816 AT3G01080.1 53.030 66 30 1 160 225 167 231 1.96e-15 77.0
MsaG046816 AT3G01080.2 64.000 75 27 0 145 219 329 403 6.68e-27 110
MsaG046816 AT3G01080.2 53.030 66 30 1 160 225 205 269 1.97e-15 77.0
MsaG046816 AT2G46130.2 61.039 77 26 1 141 217 11 83 2.06e-26 101
MsaG046816 AT4G26440.1 48.214 112 57 1 119 229 330 441 2.90e-26 109
MsaG046816 AT4G26440.1 50.725 69 33 1 160 228 178 245 3.86e-15 76.6
MsaG046816 AT2G21900.1 50.000 86 38 2 141 221 85 170 3.28e-25 100
MsaG046816 AT5G56270.1 60.526 76 30 0 144 219 471 546 3.37e-25 106
MsaG046816 AT5G56270.1 52.778 72 31 2 160 231 273 341 9.79e-16 78.6
MsaG046816 AT5G64810.1 45.745 94 49 1 125 218 77 168 1.04e-24 99.4
MsaG046816 AT2G30250.1 57.500 80 34 0 144 223 312 391 6.53e-24 101
MsaG046816 AT2G30250.1 44.828 87 39 2 161 239 167 252 3.42e-13 70.1
MsaG046816 AT2G04880.2 57.534 73 31 0 147 219 270 342 1.48e-23 100
MsaG046816 AT2G04880.2 57.377 61 25 1 159 219 110 169 1.35e-15 77.8
MsaG046816 AT2G04880.1 57.534 73 31 0 147 219 294 366 1.77e-23 100
MsaG046816 AT2G04880.1 57.377 61 25 1 159 219 110 169 1.35e-15 77.8
MsaG046816 AT1G55600.1 56.164 73 32 0 147 219 294 366 7.51e-22 96.3
MsaG046816 AT2G37260.2 61.290 62 24 0 155 216 262 323 1.87e-21 94.0
MsaG046816 AT2G37260.2 40.984 122 61 4 143 254 65 185 1.68e-15 76.6
MsaG046816 AT2G37260.3 61.290 62 24 0 155 216 264 325 1.88e-21 94.0
MsaG046816 AT2G37260.3 40.984 122 61 4 143 254 67 187 1.61e-15 76.6
MsaG046816 AT2G37260.1 61.290 62 24 0 155 216 344 405 2.95e-21 94.0
MsaG046816 AT2G37260.1 40.984 122 61 4 143 254 147 267 3.34e-15 76.3
MsaG046816 AT4G04450.2 51.948 77 36 1 144 219 182 258 3.20e-21 94.0
MsaG046816 AT1G62300.1 40.000 125 72 2 98 219 248 372 5.02e-21 94.0
MsaG046816 AT4G22070.4 51.948 77 36 1 144 219 281 357 7.41e-21 93.6
MsaG046816 AT4G22070.3 51.948 77 36 1 144 219 281 357 7.41e-21 93.6
MsaG046816 AT4G22070.2 51.948 77 36 1 144 219 281 357 7.41e-21 93.6
MsaG046816 AT4G22070.1 51.948 77 36 1 144 219 281 357 7.41e-21 93.6
MsaG046816 AT4G04450.1 51.948 77 36 1 144 219 276 352 8.10e-21 93.6
MsaG046816 AT1G68150.1 50.649 77 37 1 144 219 219 295 2.89e-20 90.9
MsaG046816 AT5G52830.1 55.072 69 29 2 161 228 166 233 9.20e-20 89.0
MsaG046816 AT1G80840.1 53.968 63 28 1 159 220 145 207 9.34e-20 88.2
MsaG046816 AT1G30650.1 55.072 69 29 2 161 228 218 285 1.05e-19 89.7
MsaG046816 AT2G34830.1 55.072 69 29 2 161 228 216 283 1.17e-19 89.4
MsaG046816 AT2G34830.2 55.072 69 29 2 161 228 225 292 1.22e-19 89.4
MsaG046816 AT4G31800.2 53.846 65 29 1 159 222 110 174 1.87e-19 86.3
MsaG046816 AT4G31800.1 53.846 65 29 1 159 222 175 239 2.81e-19 87.0
MsaG046816 AT2G25000.2 53.731 67 30 1 159 224 102 168 3.21e-19 85.5
MsaG046816 AT2G25000.4 53.731 67 30 1 159 224 102 168 3.21e-19 85.5
MsaG046816 AT4G01720.1 44.330 97 45 2 124 219 211 299 3.58e-19 88.6
MsaG046816 AT5G43290.1 52.113 71 33 1 147 216 100 170 3.59e-19 86.3
MsaG046816 AT1G18860.1 49.351 77 38 1 144 219 223 299 3.87e-19 88.6
MsaG046816 AT2G25000.3 45.882 85 39 2 159 242 124 202 5.12e-19 85.1
MsaG046816 AT5G45050.2 55.072 69 29 2 161 228 1153 1220 6.36e-19 88.2
MsaG046816 AT5G45050.4 55.072 69 29 2 161 228 1042 1109 6.48e-19 88.2
MsaG046816 AT5G45050.1 55.072 69 29 2 161 228 1181 1248 6.63e-19 88.2
MsaG046816 AT2G25000.1 45.882 85 39 2 159 242 145 223 6.93e-19 85.5
MsaG046816 AT4G01250.1 50.725 69 32 2 161 228 129 196 2.47e-18 84.3
MsaG046816 AT4G30935.1 31.646 158 97 3 94 245 259 411 2.47e-18 85.9
MsaG046816 AT1G29280.1 52.381 63 29 1 161 222 75 137 8.02e-18 82.0
MsaG046816 AT5G15130.1 46.753 77 40 1 144 219 211 287 9.29e-18 84.3
MsaG046816 AT5G15130.2 46.753 77 40 1 144 219 169 245 9.90e-18 84.3
MsaG046816 AT4G31550.1 44.048 84 44 2 134 216 222 303 1.50e-17 82.4
MsaG046816 AT4G31550.2 43.902 82 45 1 136 216 221 302 1.79e-17 82.0
MsaG046816 AT2G30590.1 41.667 84 48 1 135 217 288 371 2.00e-17 82.8
MsaG046816 AT3G58710.1 32.258 155 82 4 69 222 2 134 4.47e-17 80.1
MsaG046816 AT2G23320.1 43.373 83 46 1 135 216 215 297 5.15e-17 80.9
MsaG046816 AT3G58710.2 48.611 72 36 1 152 222 62 133 7.87e-17 79.7
MsaG046816 AT2G24570.1 42.697 89 48 2 134 221 219 305 2.30e-16 79.0
MsaG046816 AT5G28650.1 40.217 92 54 1 135 225 237 328 2.92e-16 79.0
MsaG046816 AT3G04670.1 40.217 92 54 1 135 225 237 328 5.23e-16 78.2
MsaG046816 AT3G01080.3 53.030 66 30 1 160 225 205 269 1.24e-15 77.0
MsaG046816 AT1G69810.2 38.211 123 61 4 109 229 107 216 1.26e-15 77.0
MsaG046816 AT1G69810.1 38.211 123 61 4 109 229 165 274 1.83e-15 77.0
MsaG046816 AT4G23550.1 46.667 75 38 2 155 228 135 208 2.01e-15 76.3
MsaG046816 AT4G24240.1 39.759 83 49 1 135 216 256 338 1.19e-14 74.3
MsaG046816 AT5G45260.1 48.571 70 32 2 161 227 1209 1277 4.16e-14 73.9
MsaG046816 AT1G66560.1 50.847 59 26 1 160 215 103 161 5.10e-14 71.2
MsaG046816 AT4G12020.6 39.796 98 54 2 88 180 564 661 1.30e-13 72.4
MsaG046816 AT4G12020.6 44.118 68 37 1 158 225 466 532 2.37e-12 68.6
MsaG046816 AT4G12020.8 39.796 98 54 2 88 180 564 661 1.30e-13 72.4
MsaG046816 AT4G12020.8 44.118 68 37 1 158 225 466 532 2.37e-12 68.6
MsaG046816 AT4G12020.10 39.796 98 54 2 88 180 564 661 1.34e-13 72.4
MsaG046816 AT4G12020.10 44.118 68 37 1 158 225 466 532 2.32e-12 68.6
MsaG046816 AT4G12020.3 39.796 98 54 2 88 180 564 661 1.38e-13 72.4
MsaG046816 AT4G12020.3 44.118 68 37 1 158 225 466 532 2.54e-12 68.6
MsaG046816 AT4G12020.7 39.796 98 54 2 88 180 564 661 1.45e-13 72.4
MsaG046816 AT4G12020.7 44.118 68 37 1 158 225 466 532 2.60e-12 68.6
MsaG046816 AT4G12020.5 39.796 98 54 2 88 180 497 594 1.48e-13 72.4
MsaG046816 AT4G12020.5 44.118 68 37 1 158 225 399 465 2.60e-12 68.6
MsaG046816 AT4G12020.4 39.796 98 54 2 88 180 564 661 1.49e-13 72.4
MsaG046816 AT4G12020.4 44.118 68 37 1 158 225 466 532 2.81e-12 68.2
MsaG046816 AT4G12020.2 39.796 98 54 2 88 180 564 661 1.50e-13 72.0
MsaG046816 AT4G12020.2 44.118 68 37 1 158 225 466 532 2.89e-12 68.2
MsaG046816 AT4G12020.1 39.796 98 54 2 88 180 564 661 1.62e-13 72.0
MsaG046816 AT4G12020.1 44.118 68 37 1 158 225 466 532 2.77e-12 68.2
MsaG046816 AT4G12020.9 39.796 98 54 2 88 180 564 661 1.62e-13 72.0
MsaG046816 AT4G12020.9 44.118 68 37 1 158 225 466 532 2.77e-12 68.2
MsaG046816 AT4G12020.11 39.796 98 54 2 88 180 564 661 1.66e-13 72.0
MsaG046816 AT4G12020.11 44.776 67 36 1 159 225 467 532 3.05e-12 68.2
MsaG046816 AT2G46400.1 40.698 86 48 1 133 215 77 162 2.67e-13 69.7
MsaG046816 AT3G56400.1 48.333 60 28 1 159 215 119 178 5.23e-13 68.9
MsaG046816 AT4G11070.2 52.542 59 25 1 160 215 109 167 1.34e-12 67.4
MsaG046816 AT4G11070.1 52.542 59 25 1 160 215 141 199 1.51e-12 67.8
MsaG046816 AT1G66600.1 50.000 60 27 1 159 215 102 161 3.59e-12 65.9
MsaG046816 AT1G80590.1 44.615 65 33 1 161 222 86 150 5.48e-12 65.1
MsaG046816 AT1G66550.2 50.000 58 26 1 161 215 104 161 5.97e-12 65.1
MsaG046816 AT1G66550.1 50.000 58 26 1 161 215 109 166 6.81e-12 65.1
MsaG046816 AT2G40740.3 35.922 103 58 2 160 254 182 284 1.44e-11 64.7
MsaG046816 AT2G40740.1 35.922 103 58 2 160 254 173 275 1.52e-11 64.7
MsaG046816 AT2G40750.1 49.153 59 27 1 160 215 152 210 2.18e-11 64.7
MsaG046816 AT5G24110.1 38.961 77 39 2 159 232 112 183 2.58e-11 63.9
MsaG046816 AT4G23810.1 49.153 59 27 1 160 215 158 216 5.85e-11 63.2
MsaG046816 AT5G01900.1 47.368 57 27 1 161 214 111 167 8.17e-11 62.0

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig1 gene 2587807 2589347 2587807 ID=MsaG046816
Contig1 mRNA 2587807 2589347 2587807 ID=MsaT046816.1;Parent=MsaG046816
Contig1 exon 2587807 2588251 2587807 ID=MsaT046816.1.exon3;Parent=MsaT046816.1
Contig1 CDS 2587807 2588251 2587807 ID=cds.MsaT046816.1;Parent=MsaT046816.1
Contig1 exon 2588373 2588516 2588373 ID=MsaT046816.1.exon2;Parent=MsaT046816.1
Contig1 CDS 2588373 2588516 2588373 ID=cds.MsaT046816.1;Parent=MsaT046816.1
Contig1 exon 2588953 2589347 2588953 ID=MsaT046816.1.exon1;Parent=MsaT046816.1
Contig1 CDS 2588953 2589347 2588953 ID=cds.MsaT046816.1;Parent=MsaT046816.1
Gene Sequence

>MsaT046816.1

ATGGAGAAGAAAGAGATGGGTGTAAGTGTGAAGAGTGAGGATGTTATTGTTGATTCTTCCTCATCTTTGCTAAATGGTTATCAATTTTCAAGCGTGTTTGATTTCTGTGAGGTTGAAAGAAGTTCTTCTTTAGGGTTTATGGAGTTACTTGGTGGTCAGGACTATACTCCTCTCCTTGATGTACCAACCATGTCTGCAGTGACTCATAATCACAATACAGTTAAATCTTCATCTGAAAAAGAGTGTTCTGAGGTTTTGAACCAGCAACAACCTGCAACTCCTAACTCTTGTTCGATTTCATCTGCATCTAGTGAAGCAGTCAATGATAATAAGATTGTTGTTAACCAAGCAGAAGAAGATGAAGAAGAAGAAGAAAAGCAAAAGACAAACAAACAGTTGAAAACGAAGAAGACAAATCTAAAGAGACAGAGAGAACCAAGATTTGCTTTCATGACAAAAAGCGAGGTTGATCATCTGGAAGATGGATACCGATGGAGAAAGTACGGTCAAAAAGCTGTCAAAAATAGCCCTTTTCCAAGGAGCTACTATCGTTGCACCACTGCTGCATGTAATGTCAAGAAACGTGTGGAACGTTCTTACACTGATCCAAGCATTGTAGTCACAACATATGAAGGCCAACACACACATCCAAGTCCAACTATGTCCCGTTCCGCCTTTGCCGGAGTTCAAATACCACCACCCGCCGGTGTAGTCTCGGGTGGATTTCCAGCTACTAACTTTGGTTCAGTTTTGCAAGGAAACTACTTATCACAATATCATCAACAACCCTATCAACATCAACAACTACTTGTTAATACATTGTCCTCTTTGAATCACCCTTATAACAATTCTTCATCATTCAAGAATTCACCTTTTACTGCCCAAGAGAGAGTACAGCTTTGTAATCAAGGGACAACTGCATTTCTTAGGGATAATGGGCTACTTCAGGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG

Protein sequence

>MsaT046816.1

MEKKEMGVSVKSEDVIVDSSSSLLNGYQFSSVFDFCEVERSSSLGFMELLGGQDYTPLLDVPTMSAVTHNHNTVKSSSEKECSEVLNQQQPATPNSCSISSASSEAVNDNKIVVNQAEEDEEEEEKQKTNKQLKTKKTNLKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTAACNVKKRVERSYTDPSIVVTTYEGQHTHPSPTMSRSAFAGVQIPPPAGVVSGGFPATNFGSVLQGNYLSQYHQQPYQHQQLLVNTLSSLNHPYNNSSSFKNSPFTAQERVQLCNQGTTAFLRDNGLLQDVVPSHMLKEE*