AlfalfaGEDB | MsaG046825

M. sativa ssp. caerulea / MsaG046825

KEGG: K14494
GO: -
PFAM: PF03514.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046825	RHN81027.1	96.687	483	16	0	5	487	38	520	0.0	972

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046825	sp\|A0A0M4FMK2\|RAM1_PETHY	29.950	404	262	11	85	485	309	694	6.36e-45	170

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046825	tr\|A0A396K3R1\|A0A396K3R1_MEDTR	96.687	483	16	0	5	487	38	520	0.0	972

TFs/TRs:

Gene ID	Type	Classification
MsaG046825	TF	GRAS

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000013	MsaG046825	0.828063	1.978934e-54	5.421204e-52
MsaG003197	MsaG046825	0.881831	3.679708e-70	7.237168e-67
MsaG003754	MsaG046825	0.878292	6.624974e-69	1.105041e-65
MsaG003907	MsaG046825	0.818273	3.725439e-52	7.830666e-50
MsaG005020	MsaG046825	0.867343	2.956265e-65	3.069756e-62
MsaG005404	MsaG046825	0.835892	2.352239e-56	8.092376e-54
MsaG005477	MsaG046825	0.803491	5.722101e-49	8.376822e-47
MsaG005680	MsaG046825	0.805084	2.675307e-49	4.063849e-47
MsaG005663	MsaG046825	0.804019	4.451818e-49	6.597542e-47
MsaG006269	MsaG046825	0.803662	5.274974e-49	7.752948e-47
MsaG006868	MsaG046825	0.828422	1.622952e-54	4.491193e-52
MsaG007016	MsaG046825	0.808385	5.412103e-50	8.889238e-48
MsaG007848	MsaG046825	0.844280	1.559777e-58	6.980019e-56
MsaG007852	MsaG046825	0.824886	1.122240e-53	2.814224e-51
MsaG009346	MsaG046825	0.805134	2.612149e-49	3.972577e-47
MsaG011441	MsaG046825	0.818264	3.742761e-52	7.865250e-50
MsaG045188	MsaG046825	0.817793	4.777878e-52	9.919256e-50
MsaG045477	MsaG046825	0.850765	2.620565e-60	1.458191e-57
MsaG046539	MsaG046825	0.879025	3.666783e-69	6.327353e-66
MsaG046573	MsaG046825	0.881435	5.108486e-70	9.858540e-67
MsaG046825	MsaG001103	0.806131	1.617534e-49	2.517978e-47
MsaG046825	MsaG010137	0.816002	1.200488e-51	2.380240e-49
MsaG046825	MsaG021114	0.814027	3.277531e-51	6.182435e-49
MsaG046825	MsaG019652	0.801988	1.165292e-48	1.648001e-46
MsaG046825	MsaG025853	0.804677	3.251835e-49	4.893071e-47
MsaG046825	MsaG031590	0.800022	2.926350e-48	3.958628e-46
MsaG046825	MsaG031767	0.835945	2.280027e-56	7.856577e-54
MsaG046825	MsaG037678	0.850630	2.859590e-60	1.583898e-57
MsaG046825	MsaG038284	0.846422	4.130151e-59	1.983561e-56
MsaG046825	MsaG038131	0.803302	6.259532e-49	9.123634e-47
MsaG046825	MsaG035247	0.861597	1.811927e-63	1.497071e-60
MsaG015023	MsaG046825	0.804433	3.654093e-49	5.467367e-47
MsaG015385	MsaG046825	0.807462	8.489710e-50	1.363853e-47
MsaG015897	MsaG046825	0.801943	1.190088e-48	1.681372e-46
MsaG016670	MsaG046825	0.826929	3.692268e-54	9.798416e-52
MsaG017883	MsaG046825	0.823245	2.713623e-53	6.507872e-51
MsaG017976	MsaG046825	0.811258	1.313007e-50	2.312207e-48
MsaG018218	MsaG046825	0.887182	3.880578e-72	9.901778e-69
MsaG018481	MsaG046825	0.824337	1.509554e-53	3.729320e-51
MsaG018834	MsaG046825	0.844953	1.029561e-58	4.710997e-56
MsaG019411	MsaG046825	0.802266	1.021942e-48	1.454501e-46
MsaG021576	MsaG046825	0.801109	1.760994e-48	2.441258e-46
MsaG022467	MsaG046825	0.812510	7.029640e-51	1.276726e-48
MsaG025778	MsaG046825	0.812764	6.188521e-51	1.131042e-48
MsaG025955	MsaG046825	0.810404	2.006013e-50	3.459669e-48
MsaG026174	MsaG046825	0.827030	3.493625e-54	9.297143e-52
MsaG026777	MsaG046825	0.842658	4.207218e-58	1.786954e-55
MsaG026860	MsaG046825	0.800161	2.742527e-48	3.721479e-46
MsaG028014	MsaG046825	0.808697	4.646613e-50	7.689909e-48
MsaG028146	MsaG046825	0.834014	6.956209e-56	2.262258e-53
MsaG028160	MsaG046825	0.805566	2.123000e-49	3.261111e-47
MsaG028241	MsaG046825	0.824212	1.614849e-53	3.975610e-51
MsaG029281	MsaG046825	0.822641	3.747154e-53	8.840879e-51
MsaG029385	MsaG046825	0.802219	1.044981e-48	1.485659e-46
MsaG029537	MsaG046825	0.800858	1.980065e-48	2.729538e-46
MsaG029619	MsaG046825	0.806128	1.619529e-49	2.520939e-47
MsaG029761	MsaG046825	0.813503	4.269259e-51	7.948096e-49
MsaG032285	MsaG046825	0.809319	3.424400e-50	5.752206e-48
MsaG032487	MsaG046825	0.806661	1.252036e-49	1.973602e-47
MsaG036531	MsaG046825	0.839852	2.283747e-57	8.874140e-55
MsaG040013	MsaG046825	0.817265	6.274211e-52	1.285051e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046825	MtrunA17_Chr1g0194621	96.687	483	16	0	5	487	38	520	0.0	972
MsaG046825	MtrunA17_Chr7g0270031	58.974	468	171	10	29	487	101	556	0.0	525
MsaG046825	MtrunA17_Chr2g0294461	45.951	494	244	10	6	487	105	587	1.58e-135	403
MsaG046825	MtrunA17_Chr2g0294471	44.490	490	241	9	20	487	98	578	6.71e-127	381
MsaG046825	MtrunA17_Chr4g0057891	30.691	391	244	13	108	485	144	520	5.65e-42	156
MsaG046825	MtrunA17_Chr7g0224271	29.219	397	260	11	100	485	287	673	1.53e-40	154
MsaG046825	MtrunA17_Chr3g0110971	26.161	409	256	10	99	486	205	588	3.90e-39	149
MsaG046825	MtrunA17_Chr8g0357601	29.136	405	263	12	92	485	161	552	2.92e-38	147
MsaG046825	MtrunA17_Chr8g0376381	24.427	393	268	6	99	486	155	523	4.52e-37	143
MsaG046825	MtrunA17_Chr7g0238891	28.351	388	254	11	108	485	367	740	3.70e-34	136
MsaG046825	MtrunA17_Chr2g0306641	27.387	398	249	12	103	485	115	487	1.79e-33	132
MsaG046825	MtrunA17_Chr4g0057291	23.590	390	276	10	105	484	284	661	4.64e-32	130
MsaG046825	MtrunA17_Chr5g0396491	26.078	464	253	15	91	485	36	478	1.14e-30	124
MsaG046825	MtrunA17_Chr4g0031741	24.936	393	257	12	108	484	279	649	2.60e-29	121
MsaG046825	MtrunA17_Chr4g0031711	25.879	398	263	11	103	484	351	732	1.93e-28	119
MsaG046825	MtrunA17_Chr2g0290241	25.131	382	258	10	119	485	57	425	3.34e-28	116
MsaG046825	MtrunA17_Chr7g0245601	26.558	369	251	11	118	485	443	792	1.02e-27	117
MsaG046825	MtrunA17_Chr4g0031701	24.422	389	264	9	102	475	243	616	2.07e-27	115
MsaG046825	MtrunA17_Chr2g0328391	24.755	408	268	13	97	484	280	668	1.13e-26	114
MsaG046825	MtrunA17_Chr3g0101141	27.042	355	226	15	146	485	206	542	2.21e-26	112
MsaG046825	MtrunA17_Chr4g0031721	24.936	389	264	12	108	484	311	683	3.68e-26	112
MsaG046825	MtrunA17_Chr2g0328341	24.235	392	261	14	108	484	267	637	5.80e-26	111
MsaG046825	MtrunA17_Chr4g0038761	24.661	369	262	9	118	485	89	442	1.33e-25	109
MsaG046825	MtrunA17_Chr4g0031731	24.623	398	252	12	102	475	243	616	2.53e-25	109
MsaG046825	MtrunA17_Chr4g0076091	24.069	349	242	8	146	484	207	542	4.10e-24	105
MsaG046825	MtrunA17_Chr2g0328381	23.864	440	286	15	67	484	228	640	4.37e-23	102
MsaG046825	MtrunA17_Chr2g0328431	22.905	358	251	9	137	484	311	653	4.64e-23	102
MsaG046825	MtrunA17_Chr2g0328411	22.841	359	250	8	137	484	311	653	9.88e-23	101
MsaG046825	MtrunA17_Chr5g0445331	24.745	392	264	14	109	485	157	532	1.29e-22	100
MsaG046825	MtrunA17_Chr2g0319091	25.210	357	235	13	142	484	240	578	1.90e-22	100
MsaG046825	MtrunA17_Chr1g0183641	25.513	341	231	11	147	484	156	476	5.17e-22	99.0
MsaG046825	MtrunA17_Chr3g0085681	24.685	397	228	11	146	486	56	437	1.64e-20	94.0
MsaG046825	MtrunA17_Chr5g0447691	23.143	350	246	10	146	485	208	544	2.81e-20	94.0
MsaG046825	MtrunA17_Chr4g0038851	32.919	161	100	4	329	485	313	469	5.40e-20	92.4
MsaG046825	MtrunA17_Chr3g0125811	27.526	287	186	9	213	485	292	570	1.46e-19	91.7
MsaG046825	MtrunA17_Chr4g0039661	22.917	384	254	14	118	485	198	555	7.35e-19	89.4
MsaG046825	MtrunA17_Chr1g0159461	27.431	288	183	11	214	485	315	592	7.66e-19	89.7
MsaG046825	MtrunA17_Chr2g0328371	27.660	235	156	9	206	432	13	241	1.65e-18	85.1
MsaG046825	MtrunA17_Chr2g0328361	25.524	286	187	9	108	384	269	537	9.13e-18	86.3
MsaG046825	MtrunA17_Chr3g0114841	22.829	403	277	12	103	484	110	499	1.29e-17	85.5
MsaG046825	MtrunA17_Chr2g0328401	21.763	363	244	9	108	453	285	624	3.36e-17	84.7
MsaG046825	MtrunA17_Chr3g0085361	24.294	354	204	10	190	486	5	351	3.40e-17	82.8
MsaG046825	MtrunA17_Chr5g0401131	23.416	363	255	9	138	485	136	490	5.88e-17	83.2
MsaG046825	MtrunA17_Chr7g0236851	23.684	380	267	11	112	484	293	656	1.03e-16	83.2
MsaG046825	MtrunA17_Chr5g0424131	21.836	403	281	11	102	484	110	498	5.68e-15	77.4
MsaG046825	MtrunA17_Chr4g0012071	24.912	285	196	8	210	485	276	551	8.11e-15	77.0
MsaG046825	MtrunA17_Chr8g0383981	25.195	385	236	17	121	484	142	495	2.63e-14	75.1
MsaG046825	MtrunA17_Chr1g0200401	22.695	423	268	18	98	487	65	461	2.99e-12	68.6
MsaG046825	MtrunA17_Chr7g0230731	23.515	404	270	16	93	485	353	728	7.80e-12	67.8
MsaG046825	MtrunA17_Chr2g0329591	20.548	365	264	9	138	485	96	451	2.99e-11	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046825	AT1G66350.1	25.974	385	262	7	102	485	144	506	1.70e-42	158
MsaG046825	AT3G03450.1	27.068	399	259	8	99	486	169	546	3.71e-42	158
MsaG046825	AT2G01570.1	25.954	393	266	8	99	486	210	582	4.28e-41	155
MsaG046825	AT5G17490.1	27.436	390	253	9	104	486	151	517	2.63e-39	149
MsaG046825	AT1G14920.1	26.768	396	259	9	99	486	158	530	2.69e-39	149
MsaG046825	AT3G46600.2	26.750	400	243	14	105	485	3	371	9.75e-35	134
MsaG046825	AT2G29065.1	26.703	367	239	9	136	484	273	627	1.12e-34	137
MsaG046825	AT5G59450.1	27.250	400	246	14	108	485	222	598	2.14e-34	136
MsaG046825	AT3G46600.3	26.799	403	245	14	102	485	176	547	2.31e-34	136
MsaG046825	AT3G46600.1	26.799	403	245	14	102	485	208	579	3.77e-34	135
MsaG046825	AT3G54220.1	27.273	374	243	13	118	484	298	649	1.27e-29	123
MsaG046825	AT1G63100.2	26.510	298	201	7	202	484	359	653	3.94e-29	121
MsaG046825	AT1G63100.1	26.510	298	201	7	202	484	334	628	3.97e-29	121
MsaG046825	AT1G07530.1	24.505	404	262	11	101	484	384	764	1.13e-28	120
MsaG046825	AT4G17230.1	24.937	397	261	13	105	485	150	525	1.67e-28	119
MsaG046825	AT4G17230.2	24.937	397	261	13	105	485	150	525	1.67e-28	119
MsaG046825	AT5G41920.1	26.221	389	266	12	100	485	30	400	7.44e-28	115
MsaG046825	AT1G50420.1	24.889	450	252	15	104	485	48	479	8.17e-27	113
MsaG046825	AT2G29060.1	25.990	404	242	14	109	484	317	691	1.29e-26	114
MsaG046825	AT2G29060.2	25.990	404	242	14	109	484	280	654	1.45e-26	114
MsaG046825	AT1G07520.2	24.100	361	237	9	145	484	184	528	3.58e-26	112
MsaG046825	AT1G07520.4	24.100	361	237	9	145	484	184	528	3.58e-26	112
MsaG046825	AT1G07520.1	24.586	362	234	10	145	484	348	692	3.66e-26	112
MsaG046825	AT1G07520.3	24.586	362	234	10	145	484	349	693	3.77e-26	112
MsaG046825	AT1G50600.3	25.496	353	234	11	146	485	190	526	2.80e-24	106
MsaG046825	AT1G50600.2	25.496	353	234	11	146	485	265	601	3.07e-24	106
MsaG046825	AT1G50600.1	25.496	353	234	11	146	485	261	597	3.99e-24	106
MsaG046825	AT1G55580.1	25.668	374	241	11	146	485	75	445	1.89e-23	103
MsaG046825	AT2G37650.1	24.679	389	265	9	108	485	342	713	2.84e-23	103
MsaG046825	AT2G37650.2	24.679	389	265	9	108	485	330	701	2.98e-23	103
MsaG046825	AT2G04890.1	25.199	377	252	12	121	485	55	413	1.45e-22	100
MsaG046825	AT5G48150.1	23.760	383	264	11	118	485	121	490	5.13e-22	99.4
MsaG046825	AT5G48150.4	23.760	383	264	11	118	485	121	490	5.13e-22	99.4
MsaG046825	AT5G48150.2	23.760	383	264	11	118	485	121	490	5.13e-22	99.4
MsaG046825	AT5G48150.3	23.760	383	264	11	118	485	121	490	5.13e-22	99.4
MsaG046825	AT4G37650.1	22.821	390	276	8	114	485	147	529	9.75e-21	95.5
MsaG046825	AT5G66770.1	22.778	360	248	11	139	485	242	584	1.20e-17	86.3
MsaG046825	AT3G50650.1	22.526	293	213	7	206	485	251	542	3.92e-15	78.2
MsaG046825	AT3G49950.1	24.749	299	199	8	206	484	115	407	1.76e-14	75.9
MsaG046825	AT4G08250.1	24.641	418	272	18	87	484	82	476	9.62e-14	73.9
MsaG046825	AT4G36710.1	22.946	353	237	15	146	486	157	486	1.84e-11	66.6
MsaG046825	AT1G21450.1	23.183	289	197	9	213	485	314	593	2.33e-11	66.6

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Contig1	gene	2677583	2679046	2677583	ID=MsaG046825
Contig1	mRNA	2677583	2679046	2677583	ID=MsaT046825.1;Parent=MsaG046825
Contig1	exon	2677583	2679046	2677583	ID=MsaT046825.1.exon1;Parent=MsaT046825.1
Contig1	CDS	2677583	2679046	2677583	ID=cds.MsaT046825.1;Parent=MsaT046825.1

Gene Sequence

>MsaT046825.1

ATGGAGAAGTTACTACAAGATCTAGAGCAAGAAAATCAAGCCATGATATCAATTCCACGGCTTAAGCAGGTGCAAATGCCACCACCATCTTCTTTAGCATCACTTGAGCTATTGAAAAATTATGGAAGCAAGTTCAATAAGCAAAAAAGCAAAAGCAATGTTGAAACTTGTGTAAGTCCACAAAAGTTGTCAACTGAAGATATAATAACACTTGCAGGAACGAAGTATATCCAAAACTCATCACTGTGGCATGATAATAATCTTTACATTCCTTATGGAACTGTTCTTGGAAGCTTGTTGTCGGACGAAGAAAATAAACAAGTTGAACTAGCTCAGTTTGTTCTAGCAGCAGCTGAGAGAGTAGGTTGTCAACAATTTGAACGTGCAAACATGTTACTTTCACATTTTCATCTCATGAATGAAAGTGTAAATATTGGAAGCACAGTTCAGAGACTTCTTTTCCATTTCTCTCAAGCACTTCAAGAGAGAATCAACAGAGAAACCGGACGAGGAAAGATGAAACTGGATAGATCAAATGAGAGAAACAAGGAGACGGAATTGATTGATAAAATGGAATTAGATACTAACATAGTAGTTAAATGTCATCAAAAAATTCCTTTCAATCAAGTAATGCAATTTGCTGGTGTACAAGCTATAGTGGAACATGTTGCATCACAAACAAAAATCCATTTGATTCATCTTAATATTGGATGTGGAGTGATGAGTACATGTTTCATGCAAGCATTAGTAGACCGCAAGGAAAAGCCGGTTGAAATTCTGAAGATCACAGCTATTGGATTTTCTAACAAGGCTAAGTTAGAAGAAATTGGCAAAAGTTTAATGAGTTTTGCTGAATCCTTGAACATACCCTTTTTATATAACATAGTTTTTGTTGAAGATGCTATGGAGATTAAGTTAGATCAATTTGAAATTGAATATGATGAAGCTGTTGCTATTTATTCTCCATGTTCACTTAGGACTATGGTATCAAATTCTGATGGCTTGGAGAATTTGATGAAGGTGATAAGAAAAATGAAACCGTTTATTATGATAGTACTTGAACTTGAAGCAAACCATAATTCACCCTTGTTTGCGAATAGGTTTGTTGAAGCATTGTTCTTTTACTCAGCATTTTTTGACTGTGTTGATACTTGTATAAAAGAGGATTATGAGTGTAGAGTGATAATGGAAGCAATATTATCTGAAGGGATAAGAAACATTGTTGGTTTGGAAGATGAAGAAAGGAAGGTTAGGAATGTGAAGATTGATGTTTGGAGAAGGTTCTTTGCAAGGTATAGAATGGTAGAAACTGGATTCAGTGAGTCTTCAATTTATCAAGCTAATTTAGTTACTAAAAAGTTTGACTGTGGGAAGTTTTGTACTATAGACAAAAATGGTAAGTGTTTAATAATTGGATGGAAGGGGACTCCAATTCATTCAGTCTCAGCTTGGAAGTTTCTTTGA

Protein sequence

>MsaT046825.1

MEKLLQDLEQENQAMISIPRLKQVQMPPPSSLASLELLKNYGSKFNKQKSKSNVETCVSPQKLSTEDIITLAGTKYIQNSSLWHDNNLYIPYGTVLGSLLSDEENKQVELAQFVLAAAERVGCQQFERANMLLSHFHLMNESVNIGSTVQRLLFHFSQALQERINRETGRGKMKLDRSNERNKETELIDKMELDTNIVVKCHQKIPFNQVMQFAGVQAIVEHVASQTKIHLIHLNIGCGVMSTCFMQALVDRKEKPVEILKITAIGFSNKAKLEEIGKSLMSFAESLNIPFLYNIVFVEDAMEIKLDQFEIEYDEAVAIYSPCSLRTMVSNSDGLENLMKVIRKMKPFIMIVLELEANHNSPLFANRFVEALFFYSAFFDCVDTCIKEDYECRVIMEAILSEGIRNIVGLEDEERKVRNVKIDVWRRFFARYRMVETGFSESSIYQANLVTKKFDCGKFCTIDKNGKCLIIGWKGTPIHSVSAWKFL*