AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046826


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046826 MtrunA17_Chr1g0194631 98.814 759 9 0 50 808 1 759 0.0 1567
MsaG046826 MtrunA17_Chr5g0401921 47.275 844 366 15 16 804 42 861 0.0 687
MsaG046826 MtrunA17_Chr7g0235081 57.224 353 133 8 462 806 4 346 6.96e-128 386
MsaG046826 MtrunA17_Chr7g0270001 64.000 275 91 4 541 807 25 299 5.29e-114 348
MsaG046826 MtrunA17_Chr7g0235091 37.631 287 155 5 50 335 1 264 1.55e-55 194
MsaG046826 MtrunA17_Chr7g0270011 53.659 123 52 1 179 301 70 187 2.02e-36 140
MsaG046826 MtrunA17_Chr7g0270011 67.273 55 17 1 441 495 231 284 3.02e-15 77.8
MsaG046826 MtrunA17_Chr2g0297191 39.516 124 73 1 654 775 1027 1150 2.36e-22 103
MsaG046826 MtrunA17_Chr1g0147121 36.800 125 77 2 657 779 890 1014 1.33e-20 97.8
MsaG046826 MtrunA17_Chr8g0347071 37.705 122 74 2 660 779 808 929 2.19e-20 97.1
MsaG046826 MtrunA17_Chr3g0126701 37.705 122 74 2 660 779 922 1043 6.69e-20 95.5
MsaG046826 MtrunA17_Chr7g0275611 36.170 141 76 3 660 798 823 951 1.43e-19 94.4
MsaG046826 MtrunA17_Chr7g0221611 40.336 119 68 2 658 773 904 1022 4.35e-19 92.8
MsaG046826 MtrunA17_Chr1g0201621 36.641 131 81 1 647 775 72 202 1.65e-18 89.4
MsaG046826 MtrunA17_Chr1g0201311 36.641 131 81 1 647 775 72 202 3.84e-18 88.6
MsaG046826 MtrunA17_Chr2g0305371 30.921 152 95 3 624 773 306 449 3.30e-16 82.4
MsaG046826 MtrunA17_Chr1g0149581 32.283 127 80 1 655 775 1517 1643 6.03e-16 82.8
MsaG046826 MtrunA17_Chr1g0149611 34.783 115 69 1 665 773 369 483 9.30e-16 81.3
MsaG046826 MtrunA17_Chr5g0405161 45.652 92 43 3 206 296 12 97 2.07e-15 76.3
MsaG046826 MtrunA17_Chr5g0405161 49.398 83 39 2 413 495 89 168 1.16e-14 74.3
MsaG046826 MtrunA17_Chr6g0477001 32.847 137 87 3 648 779 101 237 3.16e-14 75.1
MsaG046826 MtrunA17_Chr3g0125251 27.692 195 103 4 583 775 1284 1442 8.92e-13 72.8
MsaG046826 MtrunA17_Chr5g0403241 29.655 145 85 2 648 775 1341 1485 1.53e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046826 AT4G02020.1 56.057 842 304 14 14 808 34 856 0.0 869
MsaG046826 AT4G02020.4 54.161 781 292 14 14 747 34 795 0.0 766
MsaG046826 AT4G02020.3 52.848 755 290 14 14 721 34 769 0.0 716
MsaG046826 AT4G02020.2 52.848 755 290 14 14 721 34 769 0.0 716
MsaG046826 AT2G23380.2 62.143 420 141 10 395 804 262 673 5.50e-166 496
MsaG046826 AT2G23380.2 60.000 65 26 0 234 298 30 94 3.28e-18 90.1
MsaG046826 AT2G23380.1 62.143 420 141 10 395 804 489 900 2.86e-164 499
MsaG046826 AT2G23380.1 39.748 317 160 6 3 298 15 321 1.50e-53 201
MsaG046826 AT1G02580.1 47.583 393 173 6 411 798 323 687 6.02e-119 375
MsaG046826 AT1G02580.1 30.000 330 188 10 1 301 1 316 2.31e-24 109
MsaG046826 AT1G02580.2 43.382 272 125 5 411 680 323 567 7.87e-66 230
MsaG046826 AT1G02580.2 30.000 330 188 10 1 301 1 316 2.65e-24 108
MsaG046826 AT5G42400.7 38.583 127 76 1 651 775 1241 1367 1.52e-22 104
MsaG046826 AT5G42400.2 38.583 127 76 1 651 775 1241 1367 1.52e-22 104
MsaG046826 AT5G42400.8 38.583 127 76 1 651 775 1241 1367 1.52e-22 104
MsaG046826 AT5G42400.5 38.583 127 76 1 651 775 1241 1367 1.52e-22 104
MsaG046826 AT5G42400.4 38.583 127 76 1 651 775 1241 1367 1.52e-22 104
MsaG046826 AT5G42400.1 38.583 127 76 1 651 775 1241 1367 1.52e-22 104
MsaG046826 AT5G42400.3 38.583 127 76 1 651 775 1241 1367 1.52e-22 104
MsaG046826 AT5G42400.6 38.583 127 76 1 651 775 1241 1367 1.52e-22 104
MsaG046826 AT2G31650.1 42.857 119 65 2 658 773 897 1015 5.67e-21 99.4
MsaG046826 AT4G27910.1 37.302 126 77 2 657 780 883 1008 1.10e-20 98.6
MsaG046826 AT4G30860.1 34.337 166 94 5 613 773 287 442 1.57e-20 96.3
MsaG046826 AT5G53430.1 36.800 125 77 2 657 779 899 1023 1.63e-19 94.7
MsaG046826 AT1G05830.2 41.176 119 67 2 658 773 918 1036 7.42e-19 92.4
MsaG046826 AT1G05830.4 41.176 119 67 2 658 773 918 1036 7.42e-19 92.4
MsaG046826 AT1G05830.1 41.176 119 67 2 658 773 918 1036 7.42e-19 92.4
MsaG046826 AT1G05830.3 41.176 119 67 2 658 773 918 1036 7.42e-19 92.4
MsaG046826 AT1G76710.4 36.154 130 81 1 648 775 78 207 2.85e-18 89.4
MsaG046826 AT1G76710.2 36.154 130 81 1 648 775 78 207 3.06e-18 89.4
MsaG046826 AT1G76710.1 36.154 130 81 1 648 775 78 207 3.06e-18 89.4
MsaG046826 AT1G76710.3 36.154 130 81 1 648 775 78 207 3.10e-18 89.4
MsaG046826 AT3G61740.2 34.677 124 78 2 660 780 840 963 1.16e-17 88.6
MsaG046826 AT3G61740.1 34.677 124 78 2 660 780 876 999 1.29e-17 88.6
MsaG046826 AT3G59960.3 32.558 129 82 3 656 779 108 236 1.55e-15 78.6
MsaG046826 AT3G59960.2 32.558 129 82 3 656 779 108 236 1.55e-15 78.6
MsaG046826 AT3G59960.4 32.558 129 82 3 656 779 108 236 1.55e-15 78.6
MsaG046826 AT3G59960.1 32.558 129 82 3 656 779 108 236 2.32e-15 78.6
MsaG046826 AT2G44150.1 32.558 129 82 3 656 779 113 241 1.12e-13 73.9
MsaG046826 AT1G77300.1 31.285 179 108 5 599 775 979 1144 8.47e-13 73.2
MsaG046826 AT1G77300.2 33.846 130 84 2 648 775 1015 1144 1.12e-12 72.8

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig1 gene 2682156 2690658 2682156 ID=MsaG046826
Contig1 mRNA 2682156 2690658 2682156 ID=MsaT046826.1;Parent=MsaG046826
Contig1 exon 2682156 2682158 2682156 ID=MsaT046826.1.exon1;Parent=MsaT046826.1
Contig1 CDS 2682156 2682158 2682156 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2682356 2682448 2682356 ID=MsaT046826.1.exon2;Parent=MsaT046826.1
Contig1 CDS 2682356 2682448 2682356 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2682738 2683009 2682738 ID=MsaT046826.1.exon3;Parent=MsaT046826.1
Contig1 CDS 2682738 2683009 2682738 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2683173 2683334 2683173 ID=MsaT046826.1.exon4;Parent=MsaT046826.1
Contig1 CDS 2683173 2683334 2683173 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2683666 2683750 2683666 ID=MsaT046826.1.exon5;Parent=MsaT046826.1
Contig1 CDS 2683666 2683750 2683666 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2683895 2684050 2683895 ID=MsaT046826.1.exon6;Parent=MsaT046826.1
Contig1 CDS 2683895 2684050 2683895 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2684133 2684180 2684133 ID=MsaT046826.1.exon7;Parent=MsaT046826.1
Contig1 CDS 2684133 2684180 2684133 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2684260 2684331 2684260 ID=MsaT046826.1.exon8;Parent=MsaT046826.1
Contig1 CDS 2684260 2684331 2684260 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2684711 2685204 2684711 ID=MsaT046826.1.exon9;Parent=MsaT046826.1
Contig1 CDS 2684711 2685204 2684711 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2685800 2685953 2685800 ID=MsaT046826.1.exon10;Parent=MsaT046826.1
Contig1 CDS 2685800 2685953 2685800 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2686834 2687054 2686834 ID=MsaT046826.1.exon11;Parent=MsaT046826.1
Contig1 CDS 2686834 2687054 2686834 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2687499 2687630 2687499 ID=MsaT046826.1.exon12;Parent=MsaT046826.1
Contig1 CDS 2687499 2687630 2687499 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2689284 2689371 2689284 ID=MsaT046826.1.exon13;Parent=MsaT046826.1
Contig1 CDS 2689284 2689371 2689284 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2689483 2689530 2689483 ID=MsaT046826.1.exon14;Parent=MsaT046826.1
Contig1 CDS 2689483 2689530 2689483 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2689606 2689734 2689606 ID=MsaT046826.1.exon15;Parent=MsaT046826.1
Contig1 CDS 2689606 2689734 2689606 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2689960 2690037 2689960 ID=MsaT046826.1.exon16;Parent=MsaT046826.1
Contig1 CDS 2689960 2690037 2689960 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Contig1 exon 2690467 2690658 2690467 ID=MsaT046826.1.exon17;Parent=MsaT046826.1
Contig1 CDS 2690467 2690658 2690467 ID=cds.MsaT046826.1;Parent=MsaT046826.1
Gene Sequence

>MsaT046826.1

ATGGAAGAGCCGCCAAATGATGATGTGGGAACCTTGTCCAACAAGATAAATCAGTTGCAAAAGCAAATCCAGGCCGAGAGAATTCAATCCATTAAGGAAAAACTTCAGAGGAACCAGAAGAAGCTGCAATGTCATACTTCAGGAATAATGTCAGCAGTATCAACCAGGGACTCTTCACAGACGGAGGAAAATACGACACGTTCAATTCTTTCCTCAAGAATGGACCGTCCTTTATGTAAATTCTATGGTTTTACCCAGGGTCCAGGAGACAGAAACCAGGGCAATCAAGACATGTCATCTGCTACAAGCATCAAGATTCCACGTATGGAAAGATTACCACCATATACATCTTGGATATTTTTGGACAGGAATCAGAGAATGGCTGACGATCAATCAGTTGTTGGAAGAAGACGGATCTATTATGATCAACGTGGAAGTGAGGCATTGATATGCAGTGACAGTGAGGAAGAATTAACAGAACCTGACGGTGAAAAACATGAATTTTGTGATGCTGAAGACCGTATTTTGTGTATGGCATTTGAGGAACACGGGTTAAATGAGGAGGTTTTGAATGTTGTTAGCAAGTATGTTGGGGGCACCAGTTTAGAAATCCAGGAGAGGTACAAAAGTATCAGAGAAAGTAATATTGGTAGGTTGGACCAGCATCCTAAAAGCTCAGGAGAACATGACTTTCCTATGAGCATGTATCTAGAGAAAAACCTGAGTGATGCATTAGATTCCCTTGATAACCTTTTCTGTCGTCGGTGCCTGATTTTTGACTGTCGACTGCATGGCTGTTCTCAACCTTTGATATATCCCAGTGAAAAGAAGACAGTTTGGTCTGAGCCTGTAGGTGATAGAAAACCATGTGGTGATCAGTGCTACCTTCAGTTAAAGGTTGTTAAAAGTTTTTCAAAAGATTCAACTCCCGGGTCTTTTCGGGATAAGAAAACTACAATTGTAGAGGAGACAGATGGGATATTGTCACCATCCAGTGCAGAAGAACCTGGCAGTCAGAGTACTACACTTCCGACAAGAATTGATTGTCATGGATATATCAATTTAAATGACCCTGACTCAGAAAACTTGAGTAAACGGAAAGTCACAAATCAGTCCGACACGGCACAATGTGACTCAAGATCGCTTCCTGATTCTCAGGATTCTTGTAAAAAGCTGAAGAGAATCTCAGATGTAGTTACTGTAATTACTGATAATAGCAAGAGCTTACATTTGGATGGACCAAAAGCTGTCACAAATGAGACAGAACTTAAAAATTCGTTGAATTCAATGGAAGAACGAGTTGATGGAATTCTTGGTTTCTCAGATTGGAAACCTCTAGAGAAAGAGTTATACTTGAAGGGAGTGGAAATGTTTGGCAGAAACAGTTGCCTCATAGCTAGGAACTTACTTTCTGGTTCGAAGACTTGCATGGAAATATCTAGTTATATGCATGATGGAGGCATGTCAATTCCCCACAGGTCTATTATTTCAGCTGGTTCAATCATGGACGACAAAGGAAAATTTGACACAGAGTGCACGGACCAAGACATGCCATCTAGACCGAGGTTGCTGAGAAAAAGAGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGTCACCCAACAATATGGAAAAGAATTGCTGATGGCAAAAACCAATCTTGCATGCAGTATACTCCATGTGGGTGTCAATCAATGTGTGGAAAGGATTGTTCTTGTCTTAATGGTGGAACATGCTGTGAAAAATATTGTGGTTGTTCGAAGAGCTGCAAGAACCGGTTCAGAGGTTGCCATTGTGCCAAGAGTCAATGTAGAAGTCGACAATGCCCATGTTTTGCTGCTGGGCGTGAATGTGATCCAGATGTCTGTCGAAACTGTTGGGTTAGCTGTGGGGATGGTACACTGGGAGAGCCACATCGGCGTGGAGAAGGTCAATGTGGCAATATGAGACTTCTTTTAAGGCAACAACAGAGGATTATCTTGGGGAAGTCTGATGTTTCTGGATGGGGAGCCTTCTTAAAGAATCCTGTTAACAAAAATGATTACCTAGGAGAGTACACGGGTGAACTGATCTCACACAGAGAAGCTGATAAGCGTGGGAAAATATATGATCGTGCGAATTCATCTTTCCTTTTCGATTTGAATGAGCAGTATGTTCTTGATGCTTATCGTAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAACCCCAACTGCTATGCAAAGGTAATGTTGGTTGCTGGAGATCATCGAGTTGGCATATTCGCCAAGGAACACATTGATGCCGGTGAGGAGCTCTTCTATGATTATTGCTATGGTCCAGATCAAGCACCTCCATGGGCTCGTAAACCTGAGGGTTCCAAGAGAGACGAATCAGCAATTCCACAAGGTAGAGCAAAGAAACACCAATCCCATTGA

Protein sequence

>MsaT046826.1

MEEPPNDDVGTLSNKINQLQKQIQAERIQSIKEKLQRNQKKLQCHTSGIMSAVSTRDSSQTEENTTRSILSSRMDRPLCKFYGFTQGPGDRNQGNQDMSSATSIKIPRMERLPPYTSWIFLDRNQRMADDQSVVGRRRIYYDQRGSEALICSDSEEELTEPDGEKHEFCDAEDRILCMAFEEHGLNEEVLNVVSKYVGGTSLEIQERYKSIRESNIGRLDQHPKSSGEHDFPMSMYLEKNLSDALDSLDNLFCRRCLIFDCRLHGCSQPLIYPSEKKTVWSEPVGDRKPCGDQCYLQLKVVKSFSKDSTPGSFRDKKTTIVEETDGILSPSSAEEPGSQSTTLPTRIDCHGYINLNDPDSENLSKRKVTNQSDTAQCDSRSLPDSQDSCKKLKRISDVVTVITDNSKSLHLDGPKAVTNETELKNSLNSMEERVDGILGFSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGSKTCMEISSYMHDGGMSIPHRSIISAGSIMDDKGKFDTECTDQDMPSRPRLLRKRGKTRKFKYSWKSAGHPTIWKRIADGKNQSCMQYTPCGCQSMCGKDCSCLNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGTLGEPHRRGEGQCGNMRLLLRQQQRIILGKSDVSGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDAGEELFYDYCYGPDQAPPWARKPEGSKRDESAIPQGRAKKHQSH*