Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046826 | AES61647.2 | 98.639 | 808 | 11 | 0 | 1 | 808 | 24 | 831 | 0.0 | 1665 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046826 | sp|Q9ZSM8|EZA1_ARATH | 56.057 | 842 | 304 | 14 | 14 | 808 | 34 | 856 | 0.0 | 869 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046826 | tr|G7ICX6|G7ICX6_MEDTR | 98.639 | 808 | 11 | 0 | 1 | 808 | 24 | 831 | 0.0 | 1665 |
Gene ID | Type | Classification |
---|---|---|
MsaG046826 | TR | SET |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG001003 | MsaG046826 | 0.842215 | 5.507849e-58 | 2.306051e-55 |
MsaG001720 | MsaG046826 | 0.818742 | 2.920100e-52 | 6.213028e-50 |
MsaG001930 | MsaG046826 | 0.812720 | 6.328886e-51 | 1.155411e-48 |
MsaG001932 | MsaG046826 | 0.806184 | 1.576200e-49 | 2.456793e-47 |
MsaG002117 | MsaG046826 | 0.802172 | 1.068533e-48 | 1.517509e-46 |
MsaG002978 | MsaG046826 | 0.803537 | 5.600337e-49 | 8.207348e-47 |
MsaG003174 | MsaG046826 | 0.800434 | 2.414178e-48 | 3.296308e-46 |
MsaG004140 | MsaG046826 | 0.888820 | 9.201009e-73 | 2.550442e-69 |
MsaG005239 | MsaG046826 | 0.812021 | 8.977001e-51 | 1.610729e-48 |
MsaG005344 | MsaG046826 | 0.823871 | 1.939974e-53 | 4.732075e-51 |
MsaG006039 | MsaG046826 | 0.834396 | 5.585619e-56 | 1.837500e-53 |
MsaG006323 | MsaG046826 | 0.801124 | 1.748388e-48 | 2.424650e-46 |
MsaG007748 | MsaG046826 | 0.800454 | 2.392677e-48 | 3.268357e-46 |
MsaG008298 | MsaG046826 | 0.822724 | 3.583127e-53 | 8.473210e-51 |
MsaG008733 | MsaG046826 | 0.838539 | 4.983657e-57 | 1.858662e-54 |
MsaG010284 | MsaG046826 | 0.812582 | 6.782329e-51 | 1.233983e-48 |
MsaG010365 | MsaG046826 | 0.812768 | 6.176617e-51 | 1.128975e-48 |
MsaG010940 | MsaG046826 | 0.801240 | 1.655651e-48 | 2.302034e-46 |
MsaG044908 | MsaG046826 | 0.816366 | 9.962251e-52 | 1.993711e-49 |
MsaG045520 | MsaG046826 | 0.818531 | 3.257523e-52 | 6.893242e-50 |
MsaG046054 | MsaG046826 | 0.833510 | 9.280768e-56 | 2.974034e-53 |
MsaG046143 | MsaG046826 | 0.840626 | 1.436916e-57 | 5.720524e-55 |
MsaG046171 | MsaG046826 | 0.809859 | 2.624557e-50 | 4.466795e-48 |
MsaG046378 | MsaG046826 | 0.800834 | 2.002682e-48 | 2.759202e-46 |
MsaG046528 | MsaG046826 | 0.808895 | 4.216978e-50 | 7.012112e-48 |
MsaG046431 | MsaG046826 | 0.837900 | 7.265853e-57 | 2.656607e-54 |
MsaG046473 | MsaG046826 | 0.815934 | 1.242791e-51 | 2.459938e-49 |
MsaG046754 | MsaG046826 | 0.803636 | 5.342693e-49 | 7.847473e-47 |
MsaG046826 | MsaG002630 | 0.829590 | 8.487460e-55 | 2.427730e-52 |
MsaG046826 | MsaG028121 | 0.816863 | 7.718792e-52 | 1.564536e-49 |
MsaG046826 | MsaG033389 | 0.802745 | 8.149811e-49 | 1.172719e-46 |
MsaG046826 | MsaG033101 | 0.814185 | 3.025196e-51 | 5.729257e-49 |
MsaG046826 | MsaG033460 | 0.879808 | 1.941255e-69 | 3.472865e-66 |
MsaG046826 | MsaG033665 | 0.819485 | 1.982094e-52 | 4.300411e-50 |
MsaG046826 | MsaG031379 | 0.810639 | 1.785672e-50 | 3.097295e-48 |
MsaG046826 | MsaG036853 | 0.834630 | 4.882284e-56 | 1.617397e-53 |
MsaG046826 | MsaG035795 | 0.813974 | 3.365454e-51 | 6.340091e-49 |
MsaG014774 | MsaG046826 | 0.802138 | 1.085396e-48 | 1.540265e-46 |
MsaG016840 | MsaG046826 | 0.806576 | 1.304159e-49 | 2.051742e-47 |
MsaG017284 | MsaG046826 | 0.805008 | 2.775430e-49 | 4.208508e-47 |
MsaG018489 | MsaG046826 | 0.801951 | 1.185801e-48 | 1.675604e-46 |
MsaG018633 | MsaG046826 | 0.803754 | 5.049169e-49 | 7.436926e-47 |
MsaG019222 | MsaG046826 | 0.813042 | 5.384410e-51 | 9.909413e-49 |
MsaG019308 | MsaG046826 | 0.800835 | 2.001485e-48 | 2.757639e-46 |
MsaG019660 | MsaG046826 | 0.815466 | 1.577944e-51 | 3.086493e-49 |
MsaG021322 | MsaG046826 | 0.820295 | 1.296323e-52 | 2.873543e-50 |
MsaG027178 | MsaG046826 | 0.811676 | 1.066487e-50 | 1.897386e-48 |
MsaG027505 | MsaG046826 | 0.819252 | 2.238109e-52 | 4.826427e-50 |
MsaG034997 | MsaG046826 | 0.817438 | 5.739859e-52 | 1.180829e-49 |
MsaG035198 | MsaG046826 | 0.825648 | 7.427953e-54 | 1.902124e-51 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046826 | MtrunA17_Chr1g0194631 | 98.814 | 759 | 9 | 0 | 50 | 808 | 1 | 759 | 0.0 | 1567 |
MsaG046826 | MtrunA17_Chr5g0401921 | 47.275 | 844 | 366 | 15 | 16 | 804 | 42 | 861 | 0.0 | 687 |
MsaG046826 | MtrunA17_Chr7g0235081 | 57.224 | 353 | 133 | 8 | 462 | 806 | 4 | 346 | 6.96e-128 | 386 |
MsaG046826 | MtrunA17_Chr7g0270001 | 64.000 | 275 | 91 | 4 | 541 | 807 | 25 | 299 | 5.29e-114 | 348 |
MsaG046826 | MtrunA17_Chr7g0235091 | 37.631 | 287 | 155 | 5 | 50 | 335 | 1 | 264 | 1.55e-55 | 194 |
MsaG046826 | MtrunA17_Chr7g0270011 | 53.659 | 123 | 52 | 1 | 179 | 301 | 70 | 187 | 2.02e-36 | 140 |
MsaG046826 | MtrunA17_Chr7g0270011 | 67.273 | 55 | 17 | 1 | 441 | 495 | 231 | 284 | 3.02e-15 | 77.8 |
MsaG046826 | MtrunA17_Chr2g0297191 | 39.516 | 124 | 73 | 1 | 654 | 775 | 1027 | 1150 | 2.36e-22 | 103 |
MsaG046826 | MtrunA17_Chr1g0147121 | 36.800 | 125 | 77 | 2 | 657 | 779 | 890 | 1014 | 1.33e-20 | 97.8 |
MsaG046826 | MtrunA17_Chr8g0347071 | 37.705 | 122 | 74 | 2 | 660 | 779 | 808 | 929 | 2.19e-20 | 97.1 |
MsaG046826 | MtrunA17_Chr3g0126701 | 37.705 | 122 | 74 | 2 | 660 | 779 | 922 | 1043 | 6.69e-20 | 95.5 |
MsaG046826 | MtrunA17_Chr7g0275611 | 36.170 | 141 | 76 | 3 | 660 | 798 | 823 | 951 | 1.43e-19 | 94.4 |
MsaG046826 | MtrunA17_Chr7g0221611 | 40.336 | 119 | 68 | 2 | 658 | 773 | 904 | 1022 | 4.35e-19 | 92.8 |
MsaG046826 | MtrunA17_Chr1g0201621 | 36.641 | 131 | 81 | 1 | 647 | 775 | 72 | 202 | 1.65e-18 | 89.4 |
MsaG046826 | MtrunA17_Chr1g0201311 | 36.641 | 131 | 81 | 1 | 647 | 775 | 72 | 202 | 3.84e-18 | 88.6 |
MsaG046826 | MtrunA17_Chr2g0305371 | 30.921 | 152 | 95 | 3 | 624 | 773 | 306 | 449 | 3.30e-16 | 82.4 |
MsaG046826 | MtrunA17_Chr1g0149581 | 32.283 | 127 | 80 | 1 | 655 | 775 | 1517 | 1643 | 6.03e-16 | 82.8 |
MsaG046826 | MtrunA17_Chr1g0149611 | 34.783 | 115 | 69 | 1 | 665 | 773 | 369 | 483 | 9.30e-16 | 81.3 |
MsaG046826 | MtrunA17_Chr5g0405161 | 45.652 | 92 | 43 | 3 | 206 | 296 | 12 | 97 | 2.07e-15 | 76.3 |
MsaG046826 | MtrunA17_Chr5g0405161 | 49.398 | 83 | 39 | 2 | 413 | 495 | 89 | 168 | 1.16e-14 | 74.3 |
MsaG046826 | MtrunA17_Chr6g0477001 | 32.847 | 137 | 87 | 3 | 648 | 779 | 101 | 237 | 3.16e-14 | 75.1 |
MsaG046826 | MtrunA17_Chr3g0125251 | 27.692 | 195 | 103 | 4 | 583 | 775 | 1284 | 1442 | 8.92e-13 | 72.8 |
MsaG046826 | MtrunA17_Chr5g0403241 | 29.655 | 145 | 85 | 2 | 648 | 775 | 1341 | 1485 | 1.53e-12 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG046826 | AT4G02020.1 | 56.057 | 842 | 304 | 14 | 14 | 808 | 34 | 856 | 0.0 | 869 |
MsaG046826 | AT4G02020.4 | 54.161 | 781 | 292 | 14 | 14 | 747 | 34 | 795 | 0.0 | 766 |
MsaG046826 | AT4G02020.3 | 52.848 | 755 | 290 | 14 | 14 | 721 | 34 | 769 | 0.0 | 716 |
MsaG046826 | AT4G02020.2 | 52.848 | 755 | 290 | 14 | 14 | 721 | 34 | 769 | 0.0 | 716 |
MsaG046826 | AT2G23380.2 | 62.143 | 420 | 141 | 10 | 395 | 804 | 262 | 673 | 5.50e-166 | 496 |
MsaG046826 | AT2G23380.2 | 60.000 | 65 | 26 | 0 | 234 | 298 | 30 | 94 | 3.28e-18 | 90.1 |
MsaG046826 | AT2G23380.1 | 62.143 | 420 | 141 | 10 | 395 | 804 | 489 | 900 | 2.86e-164 | 499 |
MsaG046826 | AT2G23380.1 | 39.748 | 317 | 160 | 6 | 3 | 298 | 15 | 321 | 1.50e-53 | 201 |
MsaG046826 | AT1G02580.1 | 47.583 | 393 | 173 | 6 | 411 | 798 | 323 | 687 | 6.02e-119 | 375 |
MsaG046826 | AT1G02580.1 | 30.000 | 330 | 188 | 10 | 1 | 301 | 1 | 316 | 2.31e-24 | 109 |
MsaG046826 | AT1G02580.2 | 43.382 | 272 | 125 | 5 | 411 | 680 | 323 | 567 | 7.87e-66 | 230 |
MsaG046826 | AT1G02580.2 | 30.000 | 330 | 188 | 10 | 1 | 301 | 1 | 316 | 2.65e-24 | 108 |
MsaG046826 | AT5G42400.7 | 38.583 | 127 | 76 | 1 | 651 | 775 | 1241 | 1367 | 1.52e-22 | 104 |
MsaG046826 | AT5G42400.2 | 38.583 | 127 | 76 | 1 | 651 | 775 | 1241 | 1367 | 1.52e-22 | 104 |
MsaG046826 | AT5G42400.8 | 38.583 | 127 | 76 | 1 | 651 | 775 | 1241 | 1367 | 1.52e-22 | 104 |
MsaG046826 | AT5G42400.5 | 38.583 | 127 | 76 | 1 | 651 | 775 | 1241 | 1367 | 1.52e-22 | 104 |
MsaG046826 | AT5G42400.4 | 38.583 | 127 | 76 | 1 | 651 | 775 | 1241 | 1367 | 1.52e-22 | 104 |
MsaG046826 | AT5G42400.1 | 38.583 | 127 | 76 | 1 | 651 | 775 | 1241 | 1367 | 1.52e-22 | 104 |
MsaG046826 | AT5G42400.3 | 38.583 | 127 | 76 | 1 | 651 | 775 | 1241 | 1367 | 1.52e-22 | 104 |
MsaG046826 | AT5G42400.6 | 38.583 | 127 | 76 | 1 | 651 | 775 | 1241 | 1367 | 1.52e-22 | 104 |
MsaG046826 | AT2G31650.1 | 42.857 | 119 | 65 | 2 | 658 | 773 | 897 | 1015 | 5.67e-21 | 99.4 |
MsaG046826 | AT4G27910.1 | 37.302 | 126 | 77 | 2 | 657 | 780 | 883 | 1008 | 1.10e-20 | 98.6 |
MsaG046826 | AT4G30860.1 | 34.337 | 166 | 94 | 5 | 613 | 773 | 287 | 442 | 1.57e-20 | 96.3 |
MsaG046826 | AT5G53430.1 | 36.800 | 125 | 77 | 2 | 657 | 779 | 899 | 1023 | 1.63e-19 | 94.7 |
MsaG046826 | AT1G05830.2 | 41.176 | 119 | 67 | 2 | 658 | 773 | 918 | 1036 | 7.42e-19 | 92.4 |
MsaG046826 | AT1G05830.4 | 41.176 | 119 | 67 | 2 | 658 | 773 | 918 | 1036 | 7.42e-19 | 92.4 |
MsaG046826 | AT1G05830.1 | 41.176 | 119 | 67 | 2 | 658 | 773 | 918 | 1036 | 7.42e-19 | 92.4 |
MsaG046826 | AT1G05830.3 | 41.176 | 119 | 67 | 2 | 658 | 773 | 918 | 1036 | 7.42e-19 | 92.4 |
MsaG046826 | AT1G76710.4 | 36.154 | 130 | 81 | 1 | 648 | 775 | 78 | 207 | 2.85e-18 | 89.4 |
MsaG046826 | AT1G76710.2 | 36.154 | 130 | 81 | 1 | 648 | 775 | 78 | 207 | 3.06e-18 | 89.4 |
MsaG046826 | AT1G76710.1 | 36.154 | 130 | 81 | 1 | 648 | 775 | 78 | 207 | 3.06e-18 | 89.4 |
MsaG046826 | AT1G76710.3 | 36.154 | 130 | 81 | 1 | 648 | 775 | 78 | 207 | 3.10e-18 | 89.4 |
MsaG046826 | AT3G61740.2 | 34.677 | 124 | 78 | 2 | 660 | 780 | 840 | 963 | 1.16e-17 | 88.6 |
MsaG046826 | AT3G61740.1 | 34.677 | 124 | 78 | 2 | 660 | 780 | 876 | 999 | 1.29e-17 | 88.6 |
MsaG046826 | AT3G59960.3 | 32.558 | 129 | 82 | 3 | 656 | 779 | 108 | 236 | 1.55e-15 | 78.6 |
MsaG046826 | AT3G59960.2 | 32.558 | 129 | 82 | 3 | 656 | 779 | 108 | 236 | 1.55e-15 | 78.6 |
MsaG046826 | AT3G59960.4 | 32.558 | 129 | 82 | 3 | 656 | 779 | 108 | 236 | 1.55e-15 | 78.6 |
MsaG046826 | AT3G59960.1 | 32.558 | 129 | 82 | 3 | 656 | 779 | 108 | 236 | 2.32e-15 | 78.6 |
MsaG046826 | AT2G44150.1 | 32.558 | 129 | 82 | 3 | 656 | 779 | 113 | 241 | 1.12e-13 | 73.9 |
MsaG046826 | AT1G77300.1 | 31.285 | 179 | 108 | 5 | 599 | 775 | 979 | 1144 | 8.47e-13 | 73.2 |
MsaG046826 | AT1G77300.2 | 33.846 | 130 | 84 | 2 | 648 | 775 | 1015 | 1144 | 1.12e-12 | 72.8 |
Find 0 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Contig1 | gene | 2682156 | 2690658 | 2682156 | ID=MsaG046826 |
Contig1 | mRNA | 2682156 | 2690658 | 2682156 | ID=MsaT046826.1;Parent=MsaG046826 |
Contig1 | exon | 2682156 | 2682158 | 2682156 | ID=MsaT046826.1.exon1;Parent=MsaT046826.1 |
Contig1 | CDS | 2682156 | 2682158 | 2682156 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2682356 | 2682448 | 2682356 | ID=MsaT046826.1.exon2;Parent=MsaT046826.1 |
Contig1 | CDS | 2682356 | 2682448 | 2682356 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2682738 | 2683009 | 2682738 | ID=MsaT046826.1.exon3;Parent=MsaT046826.1 |
Contig1 | CDS | 2682738 | 2683009 | 2682738 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2683173 | 2683334 | 2683173 | ID=MsaT046826.1.exon4;Parent=MsaT046826.1 |
Contig1 | CDS | 2683173 | 2683334 | 2683173 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2683666 | 2683750 | 2683666 | ID=MsaT046826.1.exon5;Parent=MsaT046826.1 |
Contig1 | CDS | 2683666 | 2683750 | 2683666 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2683895 | 2684050 | 2683895 | ID=MsaT046826.1.exon6;Parent=MsaT046826.1 |
Contig1 | CDS | 2683895 | 2684050 | 2683895 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2684133 | 2684180 | 2684133 | ID=MsaT046826.1.exon7;Parent=MsaT046826.1 |
Contig1 | CDS | 2684133 | 2684180 | 2684133 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2684260 | 2684331 | 2684260 | ID=MsaT046826.1.exon8;Parent=MsaT046826.1 |
Contig1 | CDS | 2684260 | 2684331 | 2684260 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2684711 | 2685204 | 2684711 | ID=MsaT046826.1.exon9;Parent=MsaT046826.1 |
Contig1 | CDS | 2684711 | 2685204 | 2684711 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2685800 | 2685953 | 2685800 | ID=MsaT046826.1.exon10;Parent=MsaT046826.1 |
Contig1 | CDS | 2685800 | 2685953 | 2685800 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2686834 | 2687054 | 2686834 | ID=MsaT046826.1.exon11;Parent=MsaT046826.1 |
Contig1 | CDS | 2686834 | 2687054 | 2686834 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2687499 | 2687630 | 2687499 | ID=MsaT046826.1.exon12;Parent=MsaT046826.1 |
Contig1 | CDS | 2687499 | 2687630 | 2687499 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2689284 | 2689371 | 2689284 | ID=MsaT046826.1.exon13;Parent=MsaT046826.1 |
Contig1 | CDS | 2689284 | 2689371 | 2689284 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2689483 | 2689530 | 2689483 | ID=MsaT046826.1.exon14;Parent=MsaT046826.1 |
Contig1 | CDS | 2689483 | 2689530 | 2689483 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2689606 | 2689734 | 2689606 | ID=MsaT046826.1.exon15;Parent=MsaT046826.1 |
Contig1 | CDS | 2689606 | 2689734 | 2689606 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2689960 | 2690037 | 2689960 | ID=MsaT046826.1.exon16;Parent=MsaT046826.1 |
Contig1 | CDS | 2689960 | 2690037 | 2689960 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Contig1 | exon | 2690467 | 2690658 | 2690467 | ID=MsaT046826.1.exon17;Parent=MsaT046826.1 |
Contig1 | CDS | 2690467 | 2690658 | 2690467 | ID=cds.MsaT046826.1;Parent=MsaT046826.1 |
Gene Sequence |
Protein sequence |