AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046831


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046831 MtrunA17_Chr1g0194681 96.667 150 5 0 1 150 1 150 1.16e-105 298
MsaG046831 MtrunA17_Chr7g0269951 48.993 149 63 2 1 149 1 136 4.91e-32 111
MsaG046831 MtrunA17_Chr4g0035414 36.090 133 70 2 13 130 16 148 1.51e-23 90.1
MsaG046831 MtrunA17_Chr1g0155551 38.816 152 83 5 7 149 9 159 2.09e-23 89.7
MsaG046831 MtrunA17_Chr3g0144941 44.211 95 53 0 13 107 16 110 3.88e-23 89.0
MsaG046831 MtrunA17_Chr8g0378901 36.986 146 82 4 1 138 1 144 3.94e-22 86.7
MsaG046831 MtrunA17_Chr3g0141881 41.558 77 45 0 24 100 60 136 2.11e-15 68.9
MsaG046831 MtrunA17_Chr7g0225661 41.935 93 50 2 7 95 60 152 3.68e-14 66.6
MsaG046831 MtrunA17_Chr8g0341311 37.374 99 58 2 1 95 44 142 2.09e-13 64.3
MsaG046831 MtrunA17_Chr3g0135061 35.000 100 65 0 7 106 36 135 2.74e-13 63.2
MsaG046831 MtrunA17_Chr5g0400901 36.667 90 51 1 8 91 36 125 4.03e-13 63.2
MsaG046831 MtrunA17_Chr4g0054291 32.292 96 62 1 24 119 72 164 4.22e-12 60.5
MsaG046831 MtrunA17_Chr7g0220571 36.697 109 62 2 24 131 84 186 5.24e-12 60.8
MsaG046831 MtrunA17_Chr1g0152241 40.000 85 47 1 26 106 59 143 7.65e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046831 AT3G62420.1 45.614 114 59 1 25 138 23 133 2.68e-27 99.8
MsaG046831 AT2G18160.1 45.545 101 54 1 22 122 26 125 6.28e-25 94.4
MsaG046831 AT1G75390.1 40.000 120 68 1 24 139 38 157 3.10e-23 90.1
MsaG046831 AT4G34590.1 48.810 84 43 0 24 107 24 107 3.93e-22 86.7
MsaG046831 AT1G75390.2 49.425 87 39 2 9 91 20 105 2.21e-19 78.6
MsaG046831 AT3G30530.1 42.466 73 42 0 24 96 78 150 1.98e-12 62.0
MsaG046831 AT5G38800.1 45.205 73 40 0 24 96 69 141 2.03e-12 61.6
MsaG046831 AT2G22850.1 43.038 79 44 1 22 99 123 201 2.15e-11 60.1
MsaG046831 AT2G22850.2 43.038 79 44 1 22 99 123 201 2.15e-11 60.1
MsaG046831 AT1G13600.1 37.273 110 64 2 8 117 67 171 4.09e-11 58.9

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig1 gene 2713012 2713464 2713012 ID=MsaG046831
Contig1 mRNA 2713012 2713464 2713012 ID=MsaT046831.1;Parent=MsaG046831
Contig1 exon 2713012 2713464 2713012 ID=MsaT046831.1.exon1;Parent=MsaT046831.1
Contig1 CDS 2713012 2713464 2713012 ID=cds.MsaT046831.1;Parent=MsaT046831.1
Gene Sequence

>MsaT046831.1

ATGGCTTCGATTCAACGTCCTGTAAGTTCAGGTTCAGGTTCAGGAGGTTCAGACGGTATGGATCTACAAATCGACGAACGAAAACGCAAGAGAATGCTGTCAAACCGTGAATCCGCGAGACGATCCAGACTGAGGAAGCAACAACAGGTTGAAGATCTGACCGGAGAAGCCGGTAGATTGAAAATAGAGAATGACCGTCTCGCGCGGAGTATTAAGGCGACGGAGGAAGCGTATGTGAAGATGGAAGCTGCTAATGATGTTATCAGAGCGCAGACAAAAGAATTGGAGGCTCAGTTTCGGTTTTTGAATTCTGTTATAGATGCTGCTGCTGCTGAAGAGGCTAATAGTTTCTCTGTCGATGATGTGCCTTTGATTGATGATCCTCTTCTCAAACCTTGGTTCATACCTTATCCAAATTATTCTATGGCATCACATGAAATGATGCTGCGTTGA

Protein sequence

>MsaT046831.1

MASIQRPVSSGSGSGGSDGMDLQIDERKRKRMLSNRESARRSRLRKQQQVEDLTGEAGRLKIENDRLARSIKATEEAYVKMEAANDVIRAQTKELEAQFRFLNSVIDAAAAEEANSFSVDDVPLIDDPLLKPWFIPYPNYSMASHEMMLR*