Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046844 | XP_039687084.1 | 83.607 | 122 | 18 | 1 | 1 | 120 | 1 | 122 | 4.27e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046844 | tr|G7INX6|G7INX6_MEDTR | 83.607 | 122 | 18 | 1 | 1 | 120 | 1 | 122 | 2.04e-68 | 211 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG046844 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG017552 | MsaG046844 | 0.813104 | 5.217335e-51 | 9.616808e-49 |
| MsaG029201 | MsaG046844 | 0.801174 | 1.708158e-48 | 2.371516e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046844 | MtrunA17_Chr2g0281511 | 83.607 | 122 | 18 | 1 | 1 | 120 | 1 | 122 | 3.93e-72 | 211 |
| MsaG046844 | MtrunA17_Chr2g0309121 | 81.148 | 122 | 20 | 2 | 1 | 120 | 1 | 121 | 2.05e-67 | 199 |
| MsaG046844 | MtrunA17_Chr3g0081891 | 80.000 | 80 | 14 | 1 | 1 | 78 | 1 | 80 | 8.86e-42 | 132 |
| MsaG046844 | MtrunA17_Chr7g0276661 | 35.878 | 131 | 62 | 5 | 7 | 117 | 38 | 166 | 8.87e-20 | 79.7 |
| MsaG046844 | MtrunA17_Chr5g0430431 | 48.214 | 56 | 29 | 0 | 59 | 114 | 199 | 254 | 2.20e-13 | 64.3 |
| MsaG046844 | MtrunA17_Chr0c01g0489371 | 39.560 | 91 | 51 | 2 | 22 | 108 | 224 | 314 | 8.56e-13 | 63.2 |
| MsaG046844 | MtrunA17_Chr8g0372431 | 27.835 | 97 | 68 | 1 | 24 | 118 | 6 | 102 | 1.24e-12 | 59.3 |
| MsaG046844 | MtrunA17_Chr8g0356961 | 36.170 | 94 | 56 | 2 | 19 | 108 | 72 | 165 | 4.95e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Contig2 | gene | 194701 | 195169 | 194701 | ID=MsaG046844 |
| Contig2 | mRNA | 194701 | 195169 | 194701 | ID=MsaT046844.1;Parent=MsaG046844 |
| Contig2 | exon | 194701 | 194811 | 194701 | ID=MsaT046844.1.exon1;Parent=MsaT046844.1 |
| Contig2 | CDS | 194701 | 194811 | 194701 | ID=cds.MsaT046844.1;Parent=MsaT046844.1 |
| Contig2 | exon | 194918 | 195169 | 194918 | ID=MsaT046844.1.exon2;Parent=MsaT046844.1 |
| Contig2 | CDS | 194918 | 195169 | 194918 | ID=cds.MsaT046844.1;Parent=MsaT046844.1 |
| Gene Sequence |
| Protein sequence |
