AlfalfaGEDB | MsaG046866

M. sativa ssp. caerulea / MsaG046866

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF10533.12

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046866	XP_013465713.1	97.668	343	5	2	1	343	1	340	0.0	682

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046866	sp\|Q9SV15\|WRK11_ARATH	59.551	356	98	12	1	342	1	324	1.84e-126	368

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046866	tr\|A0A072VCI7\|A0A072VCI7_MEDTR	97.668	343	5	2	1	343	1	340	0.0	682

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG046866	TF	WRKY

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG046866	0.806762	1.192125e-49	1.883688e-47
MsaG000032	MsaG046866	0.870565	2.701444e-66	3.205062e-63
MsaG000048	MsaG046866	0.809583	3.008269e-50	5.085909e-48
MsaG000069	MsaG046866	0.809056	3.896286e-50	6.504147e-48
MsaG000137	MsaG046866	0.902163	2.981107e-78	1.732300e-74
MsaG000202	MsaG046866	0.905199	1.302929e-79	9.086805e-76
MsaG000286	MsaG046866	0.841273	9.735614e-58	3.956043e-55
MsaG000413	MsaG046866	0.825728	7.112068e-54	1.825388e-51
MsaG000416	MsaG046866	0.846469	4.010947e-59	1.929372e-56
MsaG000488	MsaG046866	0.841489	8.547010e-58	3.496851e-55

Showing 1 to 10 of 743 entries

Previous1 2 3 4 5…75Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046866	MtrunA17_Chr1g0147881	97.668	343	5	2	1	343	1	340	0.0	682
MsaG046866	MtrunA17_Chr4g0071521	50.427	351	96	10	1	322	1	302	3.41e-88	268
MsaG046866	MtrunA17_Chr4g0053281	39.899	396	127	13	1	343	1	338	6.32e-67	214
MsaG046866	MtrunA17_Chr3g0139021	64.024	164	51	5	170	331	222	379	1.56e-62	204
MsaG046866	MtrunA17_Chr5g0401821	58.394	137	50	2	208	343	141	271	9.85e-52	172
MsaG046866	MtrunA17_Chr7g0228941	65.823	79	27	0	244	322	31	109	6.91e-35	124
MsaG046866	MtrunA17_Chr2g0293481	57.955	88	32	2	240	322	237	324	5.93e-29	116
MsaG046866	MtrunA17_Chr7g0248691	62.195	82	26	2	241	322	135	211	1.41e-28	113
MsaG046866	MtrunA17_Chr2g0284321	54.762	84	37	1	242	324	11	94	9.09e-28	108
MsaG046866	MtrunA17_Chr8g0379461	52.809	89	35	1	241	322	45	133	6.12e-27	106

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046866	AT4G31550.1	59.551	356	98	12	1	342	1	324	1.87e-127	368
MsaG046866	AT4G31550.2	59.551	356	97	13	1	342	1	323	1.43e-126	366
MsaG046866	AT2G24570.1	59.659	352	100	14	1	342	1	320	1.28e-117	343
MsaG046866	AT4G31550.3	55.556	297	88	11	1	285	1	265	2.76e-90	271
MsaG046866	AT4G24240.1	43.258	356	154	12	1	324	1	340	2.87e-68	218
MsaG046866	AT2G23320.1	38.527	353	134	9	1	324	1	299	5.02e-63	203
MsaG046866	AT3G04670.1	37.500	344	160	11	11	323	1	320	1.49e-56	187
MsaG046866	AT2G30590.1	54.913	173	65	5	154	322	207	370	2.48e-55	185
MsaG046866	AT5G28650.1	35.942	345	164	11	11	323	1	320	2.69e-51	173
MsaG046866	AT2G23320.2	33.968	315	123	10	1	285	1	260	1.20e-34	128

Showing 1 to 10 of 129 entries

Previous1 2 3 4 5…13Next

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Contig3	gene	55564	58265	55564	ID=MsaG046866
Contig3	mRNA	55564	58265	55564	ID=MsaT046866.1;Parent=MsaG046866
Contig3	exon	55564	55741	55564	ID=MsaT046866.1.exon3;Parent=MsaT046866.1
Contig3	CDS	55564	55741	55564	ID=cds.MsaT046866.1;Parent=MsaT046866.1
Contig3	exon	55842	55967	55842	ID=MsaT046866.1.exon2;Parent=MsaT046866.1
Contig3	CDS	55842	55967	55842	ID=cds.MsaT046866.1;Parent=MsaT046866.1
Contig3	exon	57538	58265	57538	ID=MsaT046866.1.exon1;Parent=MsaT046866.1
Contig3	CDS	57538	58265	57538	ID=cds.MsaT046866.1;Parent=MsaT046866.1

Gene Sequence

>MsaT046866.1

ATGGCAGTGGAACTCATGGGGTTCCCAAAAATAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGACTCAAAGGTATGGAACACTTGATCCTAACCCTTTCTCATCAACCAACTCAATTAAACACTCAACTAACCGACCACACCGTTTCTAAGTTCAAAAAACTCATCTCTTTACTTAACCGAACCGGTCACGCCCGGTTCAGACGCGCCCCGGTTCATTCATCCTCATCTTCATCACCACCGGTTCAACCGGTTCAGATTCAATCCACTCCTTCACCGGTTCAAACACCAACCCTGTCTCTACCAAAACACTTTCCTTCTCCGTCACCTGCACTGTCACCGGCGCCAATCTCCGTGCGTCACGCGCCGGCGAGCTTTGTTCAACCGCAACCACACAGCATGACACTCGATTTCACGAAGCCAAACGACGTCGTTTTGAGCTCAAACACAAAAAACTCCATGGTTGAGCTTGAATTCTCGAAGGATACAGCAACGTTTAGCGTTTCTTCAGCTTCATCGTTTATGTCATCTGCTATTACTGGTGATGGAAGCGTTAACGGGAAACAAGGGTCTTCGATTTTTCTCAACCCAGCGGCGACACCAGCTATCTCCGGCGGAAAACCGCCGCTATCGGCGGTGCCGTCTAAGAAAAGGTGTCATGATCATGGTGAACATTCCGATGACGTTTCAGGGTCGAATAAGTGCCACTGCGTCAAGAGAAGAAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACCGCCGATATACCACCGGACGAGTACTCATGGCGGAAATACGGTCAGAAACCGATCAAGGGATCACCATATCCACGAGGCTATTACAAGTGTAGTACAGTGAGAGGGTGCCCAGCAAGGAAACACGTTGAGCGTGCAACCGACGATCCAACGATGCTGATTGTAACGTATGAAGGGGAGCACAGACACACTATTCAAGCTGCGATGCAGGAGAACGCATCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA

Protein sequence

>MsaT046866.1

MAVELMGFPKIDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVHSSSSSSPPVQPVQIQSTPSPVQTPTLSLPKHFPSPSPALSPAPISVRHAPASFVQPQPHSMTLDFTKPNDVVLSSNTKNSMVELEFSKDTATFSVSSASSFMSSAITGDGSVNGKQGSSIFLNPAATPAISGGKPPLSAVPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPTMLIVTYEGEHRHTIQAAMQENASGIVGLVFEST*