AlfalfaGEDB | MsaG046886

M. sativa ssp. caerulea / MsaG046886

KEGG: K10523
GO: GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010556 GO:0010558 GO:0010605 GO:0016020 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0034645 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090329 GO:0097305 GO:1900140 GO:1901360 GO:1901576 GO:1901700 GO:2000026 GO:2000104 GO:2000112 GO:2000113
PFAM: PF00651.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046886	KAF4365035.1	33.841	656	357	17	46	631	70	718	2.38e-83	287

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046886	sp\|B7U179\|ABAP1_ARATH	31.287	668	377	20	17	621	77	725	9.23e-71	246

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046886	tr\|A0A7J6F301\|A0A7J6F301_CANSA	33.841	656	357	17	46	631	70	718	1.14e-83	287

TFs/TRs:

Gene ID	Type	Classification
MsaG046886	TR	TRAF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001934	MsaG046886	0.819304	2.178026e-52	4.703292e-50
MsaG007821	MsaG046886	0.809460	3.195195e-50	5.386028e-48
MsaG010484	MsaG046886	0.829896	7.154652e-55	2.064462e-52
MsaG046424	MsaG046886	0.803623	5.374113e-49	7.891442e-47
MsaG046580	MsaG046886	0.822237	4.646219e-53	1.084338e-50
MsaG018344	MsaG046886	0.817354	5.992478e-52	1.230125e-49
MsaG021342	MsaG046886	0.814049	3.240082e-51	6.115274e-49
MsaG032180	MsaG046886	0.800369	2.489394e-48	3.393963e-46
MsaG040261	MsaG046886	0.806040	1.689471e-49	2.624326e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046886	MtrunA17_Chr1g0205751	33.184	669	375	16	14	621	39	696	1.38e-78	263
MsaG046886	MtrunA17_Chr5g0394261	34.326	638	338	17	53	625	76	697	2.47e-78	263
MsaG046886	MtrunA17_Chr7g0259851	33.277	592	323	16	97	633	123	697	2.79e-65	227

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046886	AT5G13060.1	31.287	668	377	20	17	621	77	725	9.38e-72	246
MsaG046886	AT5G19330.1	32.630	616	334	17	63	613	91	690	5.29e-66	230
MsaG046886	AT5G19330.2	34.097	349	205	8	63	386	92	440	2.50e-36	145

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Contig3	gene	348296	356192	348296	ID=MsaG046886
Contig3	mRNA	348296	356192	348296	ID=MsaT046886.1;Parent=MsaG046886
Contig3	exon	348296	348398	348296	ID=MsaT046886.1.exon18;Parent=MsaT046886.1
Contig3	CDS	348296	348398	348296	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	348559	348680	348559	ID=MsaT046886.1.exon17;Parent=MsaT046886.1
Contig3	CDS	348559	348680	348559	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	348825	348942	348825	ID=MsaT046886.1.exon16;Parent=MsaT046886.1
Contig3	CDS	348825	348942	348825	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	349034	349094	349034	ID=MsaT046886.1.exon15;Parent=MsaT046886.1
Contig3	CDS	349034	349094	349034	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	350392	350478	350392	ID=MsaT046886.1.exon14;Parent=MsaT046886.1
Contig3	CDS	350392	350478	350392	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	350595	350659	350595	ID=MsaT046886.1.exon13;Parent=MsaT046886.1
Contig3	CDS	350595	350659	350595	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	350951	351077	350951	ID=MsaT046886.1.exon12;Parent=MsaT046886.1
Contig3	CDS	350951	351077	350951	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	351175	351298	351175	ID=MsaT046886.1.exon11;Parent=MsaT046886.1
Contig3	CDS	351175	351298	351175	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	351571	351633	351571	ID=MsaT046886.1.exon10;Parent=MsaT046886.1
Contig3	CDS	351571	351633	351571	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	351750	351875	351750	ID=MsaT046886.1.exon9;Parent=MsaT046886.1
Contig3	CDS	351750	351875	351750	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	352414	352521	352414	ID=MsaT046886.1.exon8;Parent=MsaT046886.1
Contig3	CDS	352414	352521	352414	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	352642	352717	352642	ID=MsaT046886.1.exon7;Parent=MsaT046886.1
Contig3	CDS	352642	352717	352642	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	352803	352894	352803	ID=MsaT046886.1.exon6;Parent=MsaT046886.1
Contig3	CDS	352803	352894	352803	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	353238	353312	353238	ID=MsaT046886.1.exon5;Parent=MsaT046886.1
Contig3	CDS	353238	353312	353238	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	354585	354696	354585	ID=MsaT046886.1.exon4;Parent=MsaT046886.1
Contig3	CDS	354585	354696	354585	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	354779	354936	354779	ID=MsaT046886.1.exon3;Parent=MsaT046886.1
Contig3	CDS	354779	354936	354779	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	355825	355943	355825	ID=MsaT046886.1.exon2;Parent=MsaT046886.1
Contig3	CDS	355825	355943	355825	ID=cds.MsaT046886.1;Parent=MsaT046886.1
Contig3	exon	356024	356192	356024	ID=MsaT046886.1.exon1;Parent=MsaT046886.1
Contig3	CDS	356024	356192	356024	ID=cds.MsaT046886.1;Parent=MsaT046886.1

Gene Sequence

>MsaT046886.1

ATGATTAACTACGGTAATAGAAATACTCGAAGTCTTGATGATGACGATGTTCGCTCGTTTACGGAATTTCTGAATGATGTTACCATAACAGAGTATGATGAGGAGTACAGTTCAAAGATTGAGGAGTTCAAGAACCGTGCTAATTTTATATTAAGAATGGCATTTCACGGAAGAATTTTGAAGAGGATGGTGGACTTAGGTGTGGTTCCAGCCTTAGCTAGACATCTTGTGTCCCCGATAACTGAAGTGGTTCTAATAACTCTAAGAGCACTGAAGAATTTTGCTAAGCAATATCAAGAGCAATTTGATGAGACTCGTGCTGTATCACAAATAATTAATTTTTTAAACAATAGTCAAAATGAAGCAAAACACAGTTTGATTTACTCCTCTATTGATATCCTCACGACTCTTGCGAGGACAAGCACAACTATGCTAGATAGTATAAGGATTGCAGATGGAATTCCATCCTTGGTTCACCTACTAGATGATATTGTGCATCAAAGAGTAGCTTGCTTTGCGTTGGAAGTCCTTTCCACGAACCATGAAAATGCTACACAGATTGTAGGTCTCGGTGCTGTTCCACTTATAATTCTAATGCTATATCGTGAAGACAGGCAACTTCACAACTCTGTGTTTCAGATGATCTATAATCTAGACGGAGCTTGTGAGATAGTGAGGAGAGGTTATCTTGTTGAAGCTTTTCATCCACTTACAGAATTAATGAGCTCCACCTACTTTGAGAGCCAACGTTTGGCCATCGATTTGCTTGATTTGATTGTAAAGACCAACCCACAATGGAAGATCATGCTTATCCAAAGAGGTCTTATACCTTTATTGACAAAGGCACTTACGTCTGCTAATGAAGGAGTCCAGGAAAGCTCAGTATTCTTATTATGTTTCTTATCTGAGGACTCGGATTGTCAAGTTGGTATTGTGAATGAAGGCTTGGTGGAATTACTGAAGGTGTTGGACACAAAATTATATTCTCTGCAAGTAGGTGCTGCTTTTACTCTTCATCGTCTTGCAGATAATAAGGACAATGTGTACAAGTTTATCATGCTAGGTGGAGTCAGAGACTCCTCCAAGGAGGATATCTTGGTACTAACTCAACTGTTACACCGAATGTGGAGTTTGCCGAATGATTTTCAAACACGAATTGCTTTGGCTTTGGCCTATTTAAGTTCAGAAGTCGATAGCAAAAGAATTTTTATCGATAGCTATGGTCTTGAGTTGCTTACTGAGCTACTTGGCTCATCCTCTAAGGAGGATCGGAAGCTGCTGCGGCTTTATTCAAGTTGGCCAGTAAATTCTTGGCCCCATCTCCGGCTACTTCTTTATCAATACATCCGGGCAAATATAGAGAGTTTTGCTGATACTGATGGAAAAATGTCAGGCGTTATATTTCTTCTTGAAGGCAAACTGCTGTATGCACATAAATCTCGAATAATAAATGCTTCAAAGGTGTTGAGTGCTATGGTTACTAAGTCGGAGTCTTTTGTGACGGGCACTGCACACGTAGTGATCACTGAAGTGAAATATAAAGTTTTTGAAAGGATATTGAGATTTATTTACACTGGAAACACATATGTCAGTGTGGATACTGCTAGAGAACTTTTTGAAGCTGCTAGTTATTTTGATTTAGCAGAACTAATGAAACTCTGTGAAAATAAGATTGCTCAGAATGTACTTAGCGTGGAAACTATATGGCTTTTATATGAAGCTGCTGAAGCTTTCGTTGCTCTAACATTAAAGGGTCACTGTATCATGTTTGCATTGAGAAACTATGAAGAGTTGAGGGAAAGGAAACCTGACTTTATTGACAACATGATACCTAAAATACACCATCAGATGGTACACCTCTTACGCAGTGGCAGTTTAGATTGTGCGCGTCCAGACCCACAGTAG

Protein sequence

>MsaT046886.1

MINYGNRNTRSLDDDDVRSFTEFLNDVTITEYDEEYSSKIEEFKNRANFILRMAFHGRILKRMVDLGVVPALARHLVSPITEVVLITLRALKNFAKQYQEQFDETRAVSQIINFLNNSQNEAKHSLIYSSIDILTTLARTSTTMLDSIRIADGIPSLVHLLDDIVHQRVACFALEVLSTNHENATQIVGLGAVPLIILMLYREDRQLHNSVFQMIYNLDGACEIVRRGYLVEAFHPLTELMSSTYFESQRLAIDLLDLIVKTNPQWKIMLIQRGLIPLLTKALTSANEGVQESSVFLLCFLSEDSDCQVGIVNEGLVELLKVLDTKLYSLQVGAAFTLHRLADNKDNVYKFIMLGGVRDSSKEDILVLTQLLHRMWSLPNDFQTRIALALAYLSSEVDSKRIFIDSYGLELLTELLGSSSKEDRKLLRLYSSWPVNSWPHLRLLLYQYIRANIESFADTDGKMSGVIFLLEGKLLYAHKSRIINASKVLSAMVTKSESFVTGTAHVVITEVKYKVFERILRFIYTGNTYVSVDTARELFEAASYFDLAELMKLCENKIAQNVLSVETIWLLYEAAEAFVALTLKGHCIMFALRNYEELRERKPDFIDNMIPKIHHQMVHLLRSGSLDCARPDPQ*