Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046900 | GAU35997.1 | 60.938 | 64 | 25 | 0 | 1 | 64 | 1 | 64 | 2.95e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046900 | tr|A0A2Z6P0N6|A0A2Z6P0N6_TRISU | 60.938 | 64 | 25 | 0 | 1 | 64 | 1 | 64 | 1.41e-15 | 76.6 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG046900 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG009439 | MsaG046900 | 0.820449 | 1.195860e-52 | 2.661662e-50 |
| MsaG031563 | MsaG046900 | 0.974828 | 3.394942e-138 | 5.385780e-132 |
| MsaG018524 | MsaG046900 | 0.808100 | 6.222089e-50 | 1.014996e-47 |
| MsaG020508 | MsaG046900 | 0.816621 | 8.741094e-52 | 1.760731e-49 |
| MsaG023630 | MsaG046900 | 0.803799 | 4.943784e-49 | 7.289175e-47 |
| MsaG035254 | MsaG046900 | 0.801911 | 1.207978e-48 | 1.705456e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046900 | MtrunA17_Chr8g0351751 | 65.574 | 61 | 21 | 0 | 1 | 61 | 1 | 61 | 1.88e-18 | 75.5 |
| MsaG046900 | MtrunA17_Chr3g0107331 | 52.459 | 61 | 29 | 0 | 4 | 64 | 3 | 63 | 7.36e-16 | 67.0 |
| MsaG046900 | MtrunA17_Chr3g0107381 | 55.738 | 61 | 27 | 0 | 1 | 61 | 1 | 61 | 1.23e-15 | 67.4 |
| MsaG046900 | MtrunA17_Chr4g0013041 | 63.934 | 61 | 20 | 1 | 1 | 61 | 1 | 59 | 1.63e-15 | 67.0 |
| MsaG046900 | MtrunA17_Chr3g0107351 | 51.667 | 60 | 29 | 0 | 5 | 64 | 4 | 63 | 2.03e-14 | 63.2 |
| MsaG046900 | MtrunA17_Chr4g0014321 | 58.333 | 60 | 25 | 0 | 1 | 60 | 1 | 60 | 3.57e-14 | 63.9 |
| MsaG046900 | MtrunA17_Chr3g0107341 | 53.333 | 60 | 28 | 0 | 5 | 64 | 4 | 63 | 4.38e-14 | 62.4 |
| MsaG046900 | MtrunA17_Chr3g0107361 | 50.000 | 60 | 30 | 0 | 5 | 64 | 4 | 63 | 2.07e-13 | 60.5 |
| MsaG046900 | MtrunA17_Chr2g0296831 | 62.500 | 64 | 24 | 0 | 1 | 64 | 1 | 64 | 3.56e-13 | 59.3 |
| MsaG046900 | MtrunA17_Chr2g0283941 | 51.613 | 62 | 29 | 1 | 1 | 62 | 1 | 61 | 6.58e-12 | 57.8 |
| MsaG046900 | MtrunA17_Chr3g0110131 | 60.656 | 61 | 24 | 0 | 1 | 61 | 1 | 61 | 7.85e-12 | 57.8 |
| MsaG046900 | MtrunA17_Chr4g0014031 | 62.295 | 61 | 23 | 0 | 1 | 61 | 1 | 61 | 1.28e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG046900 | AT5G27960.1 | 48.276 | 58 | 30 | 0 | 3 | 60 | 1 | 58 | 2.80e-11 | 57.0 |
Find 0 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Contig3 | gene | 460180 | 460374 | 460180 | ID=MsaG046900 |
| Contig3 | mRNA | 460180 | 460374 | 460180 | ID=MsaT046900.1;Parent=MsaG046900 |
| Contig3 | exon | 460180 | 460374 | 460180 | ID=MsaT046900.1.exon1;Parent=MsaT046900.1 |
| Contig3 | CDS | 460180 | 460374 | 460180 | ID=cds.MsaT046900.1;Parent=MsaT046900.1 |
| Gene Sequence |
| Protein sequence |
