AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG046944


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046944 MtrunA17_Chr1g0147121 95.821 1029 13 4 1 1004 11 1034 0.0 2033
MsaG046944 MtrunA17_Chr3g0126701 68.338 1077 244 22 1 1004 11 1063 0.0 1414
MsaG046944 MtrunA17_Chr7g0275611 52.947 950 377 12 83 1004 57 964 0.0 961
MsaG046944 MtrunA17_Chr8g0347071 55.765 850 311 9 196 1004 124 949 0.0 956
MsaG046944 MtrunA17_Chr7g0221611 32.438 484 258 16 560 1004 592 1045 8.97e-59 219
MsaG046944 MtrunA17_Chr1g0149611 30.311 386 194 15 645 1004 172 508 1.05e-35 142
MsaG046944 MtrunA17_Chr1g0149581 47.183 142 68 4 868 1004 1527 1666 2.03e-31 133
MsaG046944 MtrunA17_Chr2g0297191 42.568 148 80 3 858 1004 1028 1171 1.13e-29 127
MsaG046944 MtrunA17_Chr3g0115211 36.111 180 98 7 572 737 293 469 4.82e-24 109
MsaG046944 MtrunA17_Chr3g0115211 27.426 237 142 10 565 780 1037 1264 4.68e-15 80.5
MsaG046944 MtrunA17_Chr5g0401921 33.974 156 96 3 843 998 695 843 2.07e-21 100
MsaG046944 MtrunA17_Chr1g0194631 36.800 125 77 2 860 984 608 730 1.37e-20 97.8
MsaG046944 MtrunA17_Chr1g0201621 36.424 151 92 3 854 1003 76 223 1.03e-19 93.6
MsaG046944 MtrunA17_Chr1g0201311 35.762 151 93 3 854 1003 76 223 3.07e-19 92.4
MsaG046944 MtrunA17_Chr2g0305371 37.037 135 74 5 873 1003 344 471 8.43e-18 87.8
MsaG046944 MtrunA17_Chr7g0235081 33.088 136 87 3 851 984 183 316 7.52e-17 83.2
MsaG046944 MtrunA17_Chr7g0270001 34.400 125 78 3 860 983 146 267 6.94e-16 79.7
MsaG046944 MtrunA17_Chr6g0477001 36.923 130 77 3 873 1001 123 248 3.86e-15 78.2
MsaG046944 MtrunA17_Chr3g0125251 30.573 157 94 4 854 1003 1316 1464 1.52e-14 79.0
MsaG046944 MtrunA17_Chr8g0359281 31.638 177 104 7 572 737 130 300 3.01e-14 75.1
MsaG046944 MtrunA17_Chr5g0403241 33.333 150 69 7 873 1000 1363 1503 6.58e-13 73.6
MsaG046944 MtrunA17_Chr7g0255181 30.818 159 83 5 868 1003 550 704 5.98e-11 66.6
MsaG046944 MtrunA17_Chr5g0399801 30.357 168 74 5 873 1003 927 1088 7.94e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG046944 AT5G53430.1 60.539 1039 352 13 11 1004 18 1043 0.0 1249
MsaG046944 AT4G27910.1 60.057 1059 326 15 1 1004 11 1027 0.0 1236
MsaG046944 AT3G61740.2 49.325 963 386 16 87 1004 77 982 0.0 924
MsaG046944 AT3G61740.1 47.590 996 390 16 87 1004 77 1018 0.0 910
MsaG046944 AT1G05830.2 32.609 506 296 15 523 1004 575 1059 3.60e-69 251
MsaG046944 AT1G05830.4 32.609 506 296 15 523 1004 575 1059 3.60e-69 251
MsaG046944 AT1G05830.1 32.609 506 296 15 523 1004 575 1059 3.60e-69 251
MsaG046944 AT1G05830.3 32.609 506 296 15 523 1004 575 1059 3.60e-69 251
MsaG046944 AT2G31650.1 32.150 507 293 16 523 1004 558 1038 3.19e-67 245
MsaG046944 AT5G42400.7 42.500 160 79 5 846 1004 1241 1388 9.48e-30 128
MsaG046944 AT5G42400.2 42.500 160 79 5 846 1004 1241 1388 9.48e-30 128
MsaG046944 AT5G42400.8 42.500 160 79 5 846 1004 1241 1388 9.48e-30 128
MsaG046944 AT5G42400.5 42.500 160 79 5 846 1004 1241 1388 9.48e-30 128
MsaG046944 AT5G42400.4 42.500 160 79 5 846 1004 1241 1388 9.48e-30 128
MsaG046944 AT5G42400.1 42.500 160 79 5 846 1004 1241 1388 9.48e-30 128
MsaG046944 AT5G42400.3 42.500 160 79 5 846 1004 1241 1388 9.48e-30 128
MsaG046944 AT5G42400.6 42.500 160 79 5 846 1004 1241 1388 9.48e-30 128
MsaG046944 AT2G23380.2 35.256 156 92 4 843 997 506 653 3.11e-21 100
MsaG046944 AT2G23380.1 35.256 156 92 4 843 997 733 880 5.14e-21 99.8
MsaG046944 AT1G02580.1 36.508 126 78 2 861 986 543 666 1.21e-19 95.1
MsaG046944 AT1G77800.7 34.132 167 95 6 583 737 292 455 1.55e-19 95.5
MsaG046944 AT1G77800.7 30.851 188 99 9 543 715 923 1094 5.67e-16 84.0
MsaG046944 AT1G77800.3 34.132 167 95 6 583 737 292 455 1.62e-19 95.5
MsaG046944 AT1G77800.3 30.851 188 99 9 543 715 992 1163 5.38e-16 84.0
MsaG046944 AT1G77800.5 34.132 167 95 6 583 737 292 455 1.67e-19 95.5
MsaG046944 AT1G77800.5 30.851 188 99 9 543 715 992 1163 6.51e-16 83.6
MsaG046944 AT1G77800.4 34.132 167 95 6 583 737 292 455 1.80e-19 95.1
MsaG046944 AT1G77800.4 30.851 188 99 9 543 715 992 1163 5.96e-16 84.0
MsaG046944 AT1G77800.6 34.132 167 95 6 583 737 292 455 1.91e-19 95.1
MsaG046944 AT1G77800.6 30.851 188 99 9 543 715 965 1136 7.03e-16 83.6
MsaG046944 AT4G02020.1 35.200 125 79 2 860 984 705 827 2.87e-19 94.4
MsaG046944 AT3G14740.2 35.404 161 93 6 572 724 153 310 2.94e-19 90.9
MsaG046944 AT3G14740.1 35.404 161 93 6 572 724 153 310 3.05e-19 90.9
MsaG046944 AT1G76710.2 40.000 140 76 4 865 1003 96 228 5.15e-19 92.0
MsaG046944 AT1G76710.1 40.000 140 76 4 865 1003 96 228 5.15e-19 92.0
MsaG046944 AT1G76710.3 40.000 140 76 4 865 1003 96 228 5.32e-19 92.4
MsaG046944 AT1G76710.4 40.000 140 76 4 865 1003 96 228 5.72e-19 92.0
MsaG046944 AT4G30860.1 35.606 132 80 3 873 1003 337 464 1.18e-16 84.7
MsaG046944 AT3G59960.3 37.879 132 73 4 873 1001 122 247 3.03e-16 80.9
MsaG046944 AT3G59960.2 37.879 132 73 4 873 1001 122 247 3.03e-16 80.9
MsaG046944 AT3G59960.4 37.879 132 73 4 873 1001 122 247 3.03e-16 80.9
MsaG046944 AT3G59960.1 37.879 132 73 4 873 1001 122 247 4.26e-16 81.3
MsaG046944 AT1G77800.2 30.851 188 99 9 543 715 942 1113 5.60e-16 84.0
MsaG046944 AT1G77800.2 29.032 186 98 6 583 737 292 474 6.49e-14 77.0
MsaG046944 AT1G77800.1 30.851 188 99 9 543 715 942 1113 5.79e-16 84.0
MsaG046944 AT1G77800.1 29.032 186 98 6 583 737 292 474 6.77e-14 77.0
MsaG046944 AT2G44150.1 36.154 130 78 3 873 1001 127 252 3.31e-15 79.0
MsaG046944 AT2G23740.1 36.129 155 79 5 868 1004 1223 1375 1.07e-14 79.7
MsaG046944 AT2G23740.3 36.129 155 79 5 868 1004 1230 1382 1.17e-14 79.7
MsaG046944 AT2G23740.6 36.129 155 79 5 868 1004 1230 1382 1.17e-14 79.7
MsaG046944 AT2G23740.2 36.129 155 79 5 868 1004 1230 1382 1.17e-14 79.7
MsaG046944 AT5G28340.1 52.381 63 29 1 339 401 15 76 1.10e-13 75.1
MsaG046944 AT2G35160.5 38.136 118 61 3 873 984 622 733 1.37e-13 75.9
MsaG046944 AT2G35160.2 38.136 118 61 3 873 984 658 769 1.56e-13 75.5
MsaG046944 AT2G35160.3 38.136 118 61 3 873 984 658 769 1.56e-13 75.5
MsaG046944 AT2G35160.1 38.136 118 61 3 873 984 658 769 1.56e-13 75.5
MsaG046944 AT2G35160.4 38.136 118 61 3 873 984 658 769 1.56e-13 75.5
MsaG046944 AT1G77300.1 30.070 143 85 4 868 1003 1032 1166 1.36e-12 72.8
MsaG046944 AT1G77300.2 30.070 143 85 4 868 1003 1032 1166 1.40e-12 72.8
MsaG046944 AT2G22740.2 30.769 169 73 4 873 1003 627 789 2.77e-12 71.6
MsaG046944 AT2G22740.1 30.769 169 73 4 873 1003 627 789 2.77e-12 71.6
MsaG046944 AT4G02020.4 32.979 94 62 1 860 953 705 797 4.23e-12 70.9

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig3 gene 966143 975776 966143 ID=MsaG046944
Contig3 mRNA 966143 975776 966143 ID=MsaT046944.1;Parent=MsaG046944
Contig3 exon 966143 966233 966143 ID=MsaT046944.1.exon23;Parent=MsaT046944.1
Contig3 CDS 966143 966233 966143 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 966579 966679 966579 ID=MsaT046944.1.exon22;Parent=MsaT046944.1
Contig3 CDS 966579 966679 966579 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 966876 966950 966876 ID=MsaT046944.1.exon21;Parent=MsaT046944.1
Contig3 CDS 966876 966950 966876 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 967129 967215 967129 ID=MsaT046944.1.exon20;Parent=MsaT046944.1
Contig3 CDS 967129 967215 967129 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 967846 967935 967846 ID=MsaT046944.1.exon19;Parent=MsaT046944.1
Contig3 CDS 967846 967935 967846 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 968023 968079 968023 ID=MsaT046944.1.exon18;Parent=MsaT046944.1
Contig3 CDS 968023 968079 968023 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 968206 968292 968206 ID=MsaT046944.1.exon17;Parent=MsaT046944.1
Contig3 CDS 968206 968292 968206 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 968765 968978 968765 ID=MsaT046944.1.exon16;Parent=MsaT046944.1
Contig3 CDS 968765 968978 968765 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 969168 969232 969168 ID=MsaT046944.1.exon15;Parent=MsaT046944.1
Contig3 CDS 969168 969232 969168 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 970057 970161 970057 ID=MsaT046944.1.exon14;Parent=MsaT046944.1
Contig3 CDS 970057 970161 970057 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 970506 970651 970506 ID=MsaT046944.1.exon13;Parent=MsaT046944.1
Contig3 CDS 970506 970651 970506 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 970929 971053 970929 ID=MsaT046944.1.exon12;Parent=MsaT046944.1
Contig3 CDS 970929 971053 970929 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 971525 971624 971525 ID=MsaT046944.1.exon11;Parent=MsaT046944.1
Contig3 CDS 971525 971624 971525 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 971728 971833 971728 ID=MsaT046944.1.exon10;Parent=MsaT046944.1
Contig3 CDS 971728 971833 971728 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 972282 972417 972282 ID=MsaT046944.1.exon9;Parent=MsaT046944.1
Contig3 CDS 972282 972417 972282 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 973155 973247 973155 ID=MsaT046944.1.exon8;Parent=MsaT046944.1
Contig3 CDS 973155 973247 973155 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 973446 973537 973446 ID=MsaT046944.1.exon7;Parent=MsaT046944.1
Contig3 CDS 973446 973537 973446 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 973652 973720 973652 ID=MsaT046944.1.exon6;Parent=MsaT046944.1
Contig3 CDS 973652 973720 973652 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 973832 973900 973832 ID=MsaT046944.1.exon5;Parent=MsaT046944.1
Contig3 CDS 973832 973900 973832 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 974034 974162 974034 ID=MsaT046944.1.exon4;Parent=MsaT046944.1
Contig3 CDS 974034 974162 974034 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 974472 974667 974472 ID=MsaT046944.1.exon3;Parent=MsaT046944.1
Contig3 CDS 974472 974667 974472 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 974786 974841 974786 ID=MsaT046944.1.exon2;Parent=MsaT046944.1
Contig3 CDS 974786 974841 974786 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Contig3 exon 975051 975776 975051 ID=MsaT046944.1.exon1;Parent=MsaT046944.1
Contig3 CDS 975051 975776 975051 ID=cds.MsaT046944.1;Parent=MsaT046944.1
Gene Sequence

>MsaT046944.1

ATGCCGAATCGCAAACGGAGAAGATTAACGGAAAACGACGAGTTGACTCAGAGAAACAAGAAACTTAACGGAAATCATTTTCCGTTAAATCTTCTCAACGGTGCAATTCCCGTTAGTTTTACTGGTTTACTCGGTGCCACCGTTGCTGCGACTGTGGCACCGGGTAATGATAATAGCTGCTTTTCCGTTGTCTCTGACGACGGAAAAGGAGATATTATTAAAACCGCGACGGCTACTGCTACGCGGCCGCCGTTGGTTAGAACCTCGCGCGGCCGTCTTCAGGTTATGCCGTCGCGGTTTAATGATTCAGTTATTGTCAATTGGAGGAAAGATGGTAAAAACAATGTGGCCGCGACGTCTGCAGGCGCGGCTGCCACAAGCTTTCGTGAATTTGAATTTGAAAAATTTGAAGATTTTGGTCTTAAGAAATGCAATGGGAAGGGGAAGAATGGAACTGGAAATGGAACCGGCAGAGGGCGAGGGTATTCGGAATTGTGTGAGGAGGTGTTGCATAAGAATTTTGGTGTTGCTGCTACTAGTAAGGAAATGAGTTTGCGTGAGATTTTTGAAGAAACAAAGGTGAGTAATGGAGTTTTGAAGAAGAAAGAAGGGTTTTTTGGACCAGAAGATTTTGTGGCAGGTGATATAGTTTGGGCTAAGGCTAGGAAAAAGGAACCATTTTGGCCTGCAATTGTGATTGATGCTATGAGTCAAGCACCTGAGCTGGACTTTGCATGGGTGAAGTATGGGATGATTTTTCCATTTGTGGAAAATGTAGACAGGTTTCAAGAGCAGTCTGAGTTGAGTTACTGTGATCCGTCTCAATTTCAAGCGGCAGTTGAGGAGGCGTTTTTGGCGGATCAGGGGTTTGTAGAGAAGTTAACAGAAGATATAAATGCGGTGGCTGGTAATAATGGTTGCAGTGATGATTCTATTATTAAAAGCTTTCAGAAAGTCACTGCTTCAAACCAGAAGAAGGATTTATTTGACAGAAAGAAAAACGTGGGACTTTGTGACGAATGTGGATTGGACCTTCCTTTCAATATGTCAAAGAAAACAAAGGATTTGACTCCTGGTGGTCAACTCCTATGTAAAACATGTGCTAGGTTGACGAAATCGAAACATTATTGCGGCATATGTAAGAAAGTTTGGAATCAATCGGATAGCGGAAGTTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGCGACAAAATCTCCAGCATCCTTTTTAAGAATCTTGGAAGCACTGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAATTTTGAATTATCTGATTCAGAAAAATCACATCCAAAAATCAAATGGAGCAAATACAATGGGAAGGTAGTGCTTCCAAAGAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCCTGTCTTCACTTAGTTATGTGCAAGTGTGATTTTTGTGGGACTGAAAAACAGGCACTTAGTGAATGGGAACGTCACACAGGTTCCAAATTTAGAAACTGGAAAACAAGTATTCAGGTTAAAGGATCCATGATATCGCTGGAACAATGGATGCTACAGTTGGCTGATTTTCATGCTAAAGTTGTAGTTTCTTCTGTCAAACCTAAAAGACCATCCTCAAAAGAAAGAAAACATAAATTGCTTACCTTTCTGCAAGACAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGCGTCAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCAGACATCACACGAGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCTACTGATATCGATCCGTTATGGGTTCATGTCACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCCAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTAAGTATTCCATCAAATTCTTTCGTGAAGATTTGTGTTATTTGTAAGCAAATCCATGGCTCGTGCACACAATGTGTCAAGTGTTCCACTTATTTCCATGTCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATAGTTCGGAAAAAAATGGTAAACAGACAACAAGAATGGTTTGTTACTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATACAAACCCCTCATGGGGTCATTTCAACTAAAATCCTTATCCAAAATAAGAGAAAAGTTGGGTCAAGATTAATTTCGTCAAACAGAATAAAGGTAGAAGACACTCCTCCAGAAGATAACACCGAACATGACCCATTTTCTGCTGCTAGGTGCCGAGTCTTTGTAAGAACGAACCACACAAAAAAGAGAGCAGCAGATGAAGCCATTCCTCATAAAGTGAGGGGTCACTACCATCATCCTTTAGATGTTATACAGAGATTAAATTCATCCAAAGTGGTAGATGAGTCTCAGACATTTTCATCTTTTAGGGAACGCCTTCATCACTTACAGAGAACCGAAAACGAACGAGTGTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTATTTGCACGAAGAACTATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGTGAACAAGTAAGGCGCAGCGTTGCCGATCTAAGGGAGGCACGGTATAAATTAGAAAGGAAAGACTGCTATCTGTTCAAAATTAGTGAAGAGGTGGTAGTTGATGCAACTGATAAAGGAAATATTGCGCGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTCATGACGAGAGCCGGATCGCCCTCATTGCCAAGACTAACGTATCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCTTGTTTGTGTAAAGCTCCAAACTGCAGAAAATTCATGAATTAG

Protein sequence

>MsaT046944.1

MPNRKRRRLTENDELTQRNKKLNGNHFPLNLLNGAIPVSFTGLLGATVAATVAPGNDNSCFSVVSDDGKGDIIKTATATATRPPLVRTSRGRLQVMPSRFNDSVIVNWRKDGKNNVAATSAGAAATSFREFEFEKFEDFGLKKCNGKGKNGTGNGTGRGRGYSELCEEVLHKNFGVAATSKEMSLREIFEETKVSNGVLKKKEGFFGPEDFVAGDIVWAKARKKEPFWPAIVIDAMSQAPELDFAWVKYGMIFPFVENVDRFQEQSELSYCDPSQFQAAVEEAFLADQGFVEKLTEDINAVAGNNGCSDDSIIKSFQKVTASNQKKDLFDRKKNVGLCDECGLDLPFNMSKKTKDLTPGGQLLCKTCARLTKSKHYCGICKKVWNQSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSHPKIKWSKYNGKVVLPKKVTVLCNGVEGIYFPCLHLVMCKCDFCGTEKQALSEWERHTGSKFRNWKTSIQVKGSMISLEQWMLQLADFHAKVVVSSVKPKRPSSKERKHKLLTFLQDKYEPVCAKWTTERCAVCRWVEDWDYNKIIICVRCQIAVHQECYGARNVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDIDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCVKCSTYFHVMCASRAGYRMELHSSEKNGKQTTRMVCYCAYHRAPNPDTVLIIQTPHGVISTKILIQNKRKVGSRLISSNRIKVEDTPPEDNTEHDPFSAARCRVFVRTNHTKKRAADEAIPHKVRGHYHHPLDVIQRLNSSKVVDESQTFSSFRERLHHLQRTENERVCFGRSGIHGWGLFARRTIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGHDESRIALIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN*