AlfalfaGEDB | MsaG046945

M. sativa ssp. caerulea / MsaG046945

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF06203.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046945	XP_003588527.1	97.518	282	7	0	1	282	1	282	0.0	570

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046945	tr\|G7I4B0\|G7I4B0_MEDTR	97.518	282	7	0	1	282	1	282	0.0	570

TFs/TRs:

Gene ID	Type	Classification
MsaG046945	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000157	MsaG046945	0.808782	4.457502e-50	7.391887e-48
MsaG000326	MsaG046945	0.823296	2.640664e-53	6.341694e-51
MsaG000456	MsaG046945	0.801911	1.208214e-48	1.705765e-46
MsaG000519	MsaG046945	0.809014	3.978519e-50	6.634442e-48
MsaG000687	MsaG046945	0.805507	2.183685e-49	3.349767e-47
MsaG000855	MsaG046945	0.806779	1.182378e-49	1.869036e-47
MsaG001084	MsaG046945	0.804051	4.383208e-49	6.500955e-47
MsaG001178	MsaG046945	0.809466	3.185328e-50	5.370172e-48
MsaG001179	MsaG046945	0.822573	3.883819e-53	9.146621e-51
MsaG002013	MsaG046945	0.835959	2.262225e-56	7.798284e-54
MsaG002866	MsaG046945	0.821209	8.009512e-53	1.818884e-50
MsaG003210	MsaG046945	0.828121	1.916453e-54	5.258826e-52
MsaG003200	MsaG046945	0.801688	1.341907e-48	1.884912e-46
MsaG003468	MsaG046945	0.807345	8.984782e-50	1.439360e-47
MsaG004373	MsaG046945	0.828955	1.208053e-54	3.393236e-52
MsaG004715	MsaG046945	0.801753	1.301379e-48	1.830697e-46
MsaG004890	MsaG046945	0.803152	6.721264e-49	9.762809e-47
MsaG005031	MsaG046945	0.801659	1.360029e-48	1.909115e-46
MsaG005435	MsaG046945	0.822414	4.226848e-53	9.912033e-51
MsaG005438	MsaG046945	0.815233	1.776931e-51	3.455348e-49
MsaG005506	MsaG046945	0.824062	1.750743e-53	4.292791e-51
MsaG005508	MsaG046945	0.820170	1.384023e-52	3.057876e-50
MsaG005642	MsaG046945	0.805025	2.752296e-49	4.175213e-47
MsaG005705	MsaG046945	0.807776	7.287141e-50	1.179513e-47
MsaG005838	MsaG046945	0.801138	1.737375e-48	2.410123e-46
MsaG005864	MsaG046945	0.814621	2.425242e-51	4.643517e-49
MsaG005902	MsaG046945	0.814602	2.448813e-51	4.686366e-49
MsaG006051	MsaG046945	0.808794	4.430855e-50	7.349761e-48
MsaG006175	MsaG046945	0.856322	6.751309e-62	4.576658e-59
MsaG007716	MsaG046945	0.830129	6.280389e-55	1.824349e-52
MsaG007729	MsaG046945	0.831898	2.321898e-55	7.098653e-53
MsaG007833	MsaG046945	0.817661	5.114208e-52	1.058129e-49
MsaG008552	MsaG046945	0.822070	5.075834e-53	1.179310e-50
MsaG010053	MsaG046945	0.820095	1.439624e-52	3.174365e-50
MsaG010066	MsaG046945	0.824211	1.615466e-53	3.977072e-51
MsaG010394	MsaG046945	0.802521	9.059269e-49	1.296965e-46
MsaG010835	MsaG046945	0.810811	1.639232e-50	2.855295e-48
MsaG010894	MsaG046945	0.819709	1.763048e-52	3.847583e-50
MsaG010906	MsaG046945	0.812767	6.181885e-51	1.129889e-48
MsaG010899	MsaG046945	0.815552	1.510369e-51	2.960762e-49
MsaG011441	MsaG046945	0.802497	9.166772e-49	1.311606e-46
MsaG011806	MsaG046945	0.816977	7.278916e-52	1.479777e-49
MsaG012380	MsaG046945	0.811339	1.261272e-50	2.225516e-48
MsaG012382	MsaG046945	0.825375	8.614112e-54	2.189330e-51
MsaG041900	MsaG046945	0.812519	6.997202e-51	1.271119e-48
MsaG041902	MsaG046945	0.802896	7.587194e-49	1.095568e-46
MsaG044336	MsaG046945	0.826100	5.808625e-54	1.506364e-51
MsaG044439	MsaG046945	0.805581	2.107167e-49	3.238016e-47
MsaG045446	MsaG046945	0.810862	1.598352e-50	2.787518e-48
MsaG045452	MsaG046945	0.800973	1.876529e-48	2.593478e-46
MsaG046053	MsaG046945	0.832669	1.499875e-55	4.688902e-53
MsaG046423	MsaG046945	0.808655	4.742114e-50	7.839974e-48
MsaG046383	MsaG046945	0.821674	6.262283e-53	1.439729e-50
MsaG046427	MsaG046945	0.804064	4.357554e-49	6.464770e-47
MsaG046588	MsaG046945	0.830122	6.307796e-55	1.831907e-52
MsaG046945	MsaG046947	0.801386	1.546295e-48	2.157165e-46
MsaG046945	MsaG047054	0.804807	3.055111e-49	4.611107e-47
MsaG046945	MsaG002744	0.818234	3.800592e-52	7.980871e-50
MsaG046945	MsaG008796	0.801251	1.647607e-48	2.291419e-46
MsaG046945	MsaG009037	0.821729	6.083265e-53	1.400622e-50
MsaG046945	MsaG014180	0.825131	9.829787e-54	2.481605e-51
MsaG046945	MsaG014275	0.807542	8.164545e-50	1.314109e-47
MsaG046945	MsaG012695	0.813434	4.418867e-51	8.212761e-49
MsaG046945	MsaG019142	0.803365	6.076479e-49	8.869683e-47
MsaG046945	MsaG020796	0.802831	7.824453e-49	1.128121e-46
MsaG046945	MsaG029571	0.818137	3.997514e-52	8.373369e-50
MsaG046945	MsaG032980	0.805664	2.025556e-49	3.118633e-47
MsaG046945	MsaG032243	0.833638	8.629455e-56	2.775672e-53
MsaG046945	MsaG032845	0.807173	9.765930e-50	1.558139e-47
MsaG046945	MsaG032473	0.807458	8.506270e-50	1.366365e-47
MsaG046945	MsaG033325	0.827054	3.446832e-54	9.179038e-52
MsaG046945	MsaG037271	0.823895	1.914905e-53	4.673945e-51
MsaG046945	MsaG037384	0.801338	1.581519e-48	2.203945e-46
MsaG046945	MsaG037729	0.805892	1.814324e-49	2.808476e-47
MsaG046945	MsaG039501	0.808753	4.520324e-50	7.491083e-48
MsaG046945	MsaG039736	0.815449	1.592006e-51	3.112653e-49
MsaG046945	MsaG035272	0.814503	2.575374e-51	4.916377e-49
MsaG012894	MsaG046945	0.807667	7.681946e-50	1.240153e-47
MsaG013644	MsaG046945	0.803813	4.910961e-49	7.243127e-47
MsaG013909	MsaG046945	0.823560	2.291556e-53	5.543002e-51
MsaG014110	MsaG046945	0.800401	2.452436e-48	3.346029e-46
MsaG014184	MsaG046945	0.812059	8.808883e-51	1.581981e-48
MsaG014810	MsaG046945	0.802761	8.090511e-49	1.164612e-46
MsaG015978	MsaG046945	0.829464	9.103225e-55	2.594392e-52
MsaG016149	MsaG046945	0.802883	7.634156e-49	1.102033e-46
MsaG016685	MsaG046945	0.806578	1.303363e-49	2.050548e-47
MsaG016708	MsaG046945	0.811608	1.102993e-50	1.959125e-48
MsaG017058	MsaG046945	0.852142	1.073548e-60	6.267489e-58
MsaG017173	MsaG046945	0.815709	1.394209e-51	2.743935e-49
MsaG017209	MsaG046945	0.808130	6.130520e-50	1.000790e-47
MsaG017329	MsaG046945	0.805451	2.243458e-49	3.437032e-47
MsaG017820	MsaG046945	0.806760	1.193426e-49	1.885653e-47
MsaG018248	MsaG046945	0.833975	7.111846e-56	2.310289e-53
MsaG018773	MsaG046945	0.802031	1.141788e-48	1.616332e-46
MsaG018791	MsaG046945	0.806952	1.087042e-49	1.725311e-47
MsaG019731	MsaG046945	0.819366	2.108734e-52	4.561113e-50
MsaG020580	MsaG046945	0.822270	4.565389e-53	1.066412e-50
MsaG020874	MsaG046945	0.813887	3.517154e-51	6.611516e-49
MsaG021405	MsaG046945	0.807190	9.685633e-50	1.545949e-47
MsaG021448	MsaG046945	0.807413	8.693632e-50	1.394967e-47
MsaG021575	MsaG046945	0.805520	2.170766e-49	3.330897e-47
MsaG021668	MsaG046945	0.807960	6.659757e-50	1.082752e-47
MsaG021896	MsaG046945	0.806194	1.569012e-49	2.446166e-47
MsaG022465	MsaG046945	0.806397	1.422564e-49	2.228515e-47
MsaG022628	MsaG046945	0.805360	2.343511e-49	3.582784e-47
MsaG023339	MsaG046945	0.818505	3.301865e-52	6.982304e-50
MsaG025484	MsaG046945	0.808559	4.971081e-50	8.199389e-48
MsaG025691	MsaG046945	0.801171	1.710370e-48	2.374448e-46
MsaG025969	MsaG046945	0.808584	4.910797e-50	8.104781e-48
MsaG026721	MsaG046945	0.821454	7.037405e-53	1.608466e-50
MsaG027235	MsaG046945	0.830163	6.162185e-55	1.791747e-52
MsaG027716	MsaG046945	0.801492	1.470931e-48	2.056968e-46
MsaG028034	MsaG046945	0.802559	8.901282e-49	1.275445e-46
MsaG028374	MsaG046945	0.811473	1.179922e-50	2.088842e-48
MsaG028351	MsaG046945	0.803186	6.613084e-49	9.613521e-47
MsaG028715	MsaG046945	0.807725	7.470003e-50	1.207639e-47
MsaG028716	MsaG046945	0.815159	1.845431e-51	3.581659e-49
MsaG028811	MsaG046945	0.819648	1.819501e-52	3.964451e-50
MsaG029324	MsaG046945	0.812333	7.681489e-51	1.388947e-48
MsaG029899	MsaG046945	0.800442	2.405932e-48	3.285630e-46
MsaG030198	MsaG046945	0.810614	1.807954e-50	3.134018e-48
MsaG030471	MsaG046945	0.826610	4.395579e-54	1.156161e-51
MsaG030501	MsaG046945	0.810150	2.274007e-50	3.897519e-48
MsaG031295	MsaG046945	0.800355	2.505184e-48	3.414445e-46
MsaG032062	MsaG046945	0.822858	3.335839e-53	7.917129e-51
MsaG033343	MsaG046945	0.822214	4.702730e-53	1.096853e-50
MsaG033693	MsaG046945	0.803688	5.211023e-49	7.663578e-47
MsaG033831	MsaG046945	0.811278	1.300065e-50	2.290564e-48
MsaG034172	MsaG046945	0.814457	2.635843e-51	5.026060e-49
MsaG034659	MsaG046945	0.804402	3.707887e-49	5.544031e-47
MsaG034827	MsaG046945	0.813220	4.921775e-51	9.098515e-49
MsaG034829	MsaG046945	0.822892	3.277143e-53	7.784559e-51
MsaG035057	MsaG046945	0.817662	5.112790e-52	1.057849e-49
MsaG038016	MsaG046945	0.847618	1.949448e-59	9.746185e-57
MsaG039206	MsaG046945	0.827925	2.135398e-54	5.827418e-52
MsaG039621	MsaG046945	0.829778	7.644494e-55	2.198325e-52
MsaG040994	MsaG046945	0.820654	1.073397e-52	2.401910e-50
MsaG041039	MsaG046945	0.804259	3.971089e-49	5.917911e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046945	MtrunA17_Chr1g0147111	97.518	282	7	0	1	282	1	282	0.0	570
MsaG046945	MtrunA17_Chr3g0126721	72.340	282	68	5	1	278	1	276	7.23e-134	380
MsaG046945	MtrunA17_Chr8g0387241	48.235	85	42	1	194	276	185	269	4.34e-21	90.9
MsaG046945	MtrunA17_Chr1g0168401	34.868	152	81	4	143	277	214	364	5.02e-18	83.2
MsaG046945	MtrunA17_Chr5g0397361	45.882	85	42	1	194	278	139	219	2.15e-17	79.7
MsaG046945	MtrunA17_Chr1g0186171	34.932	146	78	4	148	277	217	361	4.98e-17	80.5
MsaG046945	MtrunA17_Chr2g0327621	33.813	139	76	4	154	280	69	203	1.60e-16	77.0
MsaG046945	MtrunA17_Chr4g0030421	42.857	84	44	2	194	277	1	80	3.39e-16	73.6
MsaG046945	MtrunA17_Chr2g0311591	53.061	49	23	0	228	276	166	214	1.06e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG046945	AT5G53420.1	50.000	278	121	7	1	276	1	262	2.34e-84	254
MsaG046945	AT4G27900.1	50.534	281	113	7	1	277	1	259	2.24e-82	249
MsaG046945	AT4G27900.2	50.534	281	113	7	1	277	1	259	2.24e-82	249
MsaG046945	AT5G53420.2	55.276	199	72	6	79	276	1	183	7.92e-64	199
MsaG046945	AT5G53420.5	55.276	199	72	6	79	276	1	183	7.92e-64	199
MsaG046945	AT5G53420.4	55.276	199	72	6	79	276	1	183	7.92e-64	199
MsaG046945	AT5G53420.3	41.905	210	109	5	1	208	1	199	1.99e-45	152
MsaG046945	AT5G41380.1	46.316	95	45	2	189	277	166	260	1.16e-19	87.4
MsaG046945	AT1G63820.1	41.584	101	40	2	194	277	139	237	8.79e-19	84.7
MsaG046945	AT1G04500.4	36.641	131	77	3	147	277	209	333	3.28e-17	81.3
MsaG046945	AT1G04500.1	36.641	131	77	3	147	277	209	333	3.28e-17	81.3
MsaG046945	AT1G04500.3	36.641	131	77	3	147	277	200	324	4.26e-17	80.9
MsaG046945	AT2G33350.2	39.831	118	47	3	184	277	238	355	5.46e-17	80.9
MsaG046945	AT2G33350.4	39.831	118	47	3	184	277	227	344	8.12e-17	80.1
MsaG046945	AT2G33350.5	39.831	118	47	3	184	277	247	364	8.30e-17	80.1
MsaG046945	AT2G33350.1	56.452	62	24	1	216	277	298	356	6.01e-16	77.8
MsaG046945	AT5G59990.1	59.091	44	18	0	239	282	170	213	1.28e-11	63.5

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Contig3	gene	982684	986554	982684	ID=MsaG046945
Contig3	mRNA	982684	986554	982684	ID=MsaT046945.1;Parent=MsaG046945
Contig3	exon	982684	982773	982684	ID=MsaT046945.1.exon4;Parent=MsaT046945.1
Contig3	CDS	982684	982773	982684	ID=cds.MsaT046945.1;Parent=MsaT046945.1
Contig3	exon	983441	983587	983441	ID=MsaT046945.1.exon3;Parent=MsaT046945.1
Contig3	CDS	983441	983587	983441	ID=cds.MsaT046945.1;Parent=MsaT046945.1
Contig3	exon	984004	984510	984004	ID=MsaT046945.1.exon2;Parent=MsaT046945.1
Contig3	CDS	984004	984510	984004	ID=cds.MsaT046945.1;Parent=MsaT046945.1
Contig3	exon	986450	986554	986450	ID=MsaT046945.1.exon1;Parent=MsaT046945.1
Contig3	CDS	986450	986554	986450	ID=cds.MsaT046945.1;Parent=MsaT046945.1

Gene Sequence

>MsaT046945.1

ATGTTTGCAGAAACTGGTCTTCTTTTCCCTTATCTACAGAATTACTCTCAAGAGTATCAACAACTTGAAGAGTATTGCATGACTCATAAGTCCAATGCTTCAATGAGTGACCTTGTTCAATCATATGCGATGTCAGAATTTGATTTATTTGTAGAGGGAGATCTGTTCAAAGCACCCGAGACGATTATTGAAGAACCGGAGATGGACCTTGATCAAATGCAAGCAGCCATGTCAATGATGTCTGGTGGGGAAGACATGTCGTCGCAGGGTCTAAAATCTTCGGATATTGATGATGTGCTTCAAAGCGAACAACTTTTGAGTGAGGTCTACTATGATTGCAAAAAAGATCTCTTAGAAAAGGCCGCTATAGAATCACCACTTTCTGAAATCCTTGAAATCAAGATTCCTGCTCTGAACATTGACGAGAATTCGATTCAAGAATACAAACCAATTCCTGATGTACTATTATCAAAGAGTGTCAGTTCAGGAAATTTGAGTTCAATGGATTGGATGCATGGTCCTGCAATGAAGCCTGCTTTCCTTGATTTCCCTGGAATTGATTTTAACGCGGTTTATGGCATGCGAAGAGCATTTAGTGAAGGAGATATAAAGACTCTTGGCAATGGTAACATGAGTGTTGGCCAATCCACTCTAGAGAGGCCTTTTCTTCTCAGCAACTGCACGAGTGAGCAACGTCAAGAAAAACTCTCCAGATATAGGAATAAGAAGACAAGGAGAAACTTTGGGAGGAAAATCAAGTATGCTTGTAGGAAGGCGCTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCGAAAACGGAGGAGTTAGATATCAAGAGGCAATGA

Protein sequence

>MsaT046945.1

MFAETGLLFPYLQNYSQEYQQLEEYCMTHKSNASMSDLVQSYAMSEFDLFVEGDLFKAPETIIEEPEMDLDQMQAAMSMMSGGEDMSSQGLKSSDIDDVLQSEQLLSEVYYDCKKDLLEKAAIESPLSEILEIKIPALNIDENSIQEYKPIPDVLLSKSVSSGNLSSMDWMHGPAMKPAFLDFPGIDFNAVYGMRRAFSEGDIKTLGNGNMSVGQSTLERPFLLSNCTSEQRQEKLSRYRNKKTRRNFGRKIKYACRKALADSQPRIRGRFAKTEELDIKRQ*