AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG047074

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG047074 MtrunA17_Chr2g0327351 96.262 321 5 4 1 315 1 320 0.0 628
MsaG047074 MtrunA17_Chr4g0028311 52.071 338 123 11 1 315 1 322 3.87e-95 284
MsaG047074 MtrunA17_Chr7g0264641 85.833 120 17 0 1 120 1 120 7.37e-78 238
MsaG047074 MtrunA17_Chr1g0152011 87.288 118 15 0 1 118 1 118 2.19e-76 237
MsaG047074 MtrunA17_Chr5g0400821 87.288 118 15 0 1 118 1 118 1.80e-75 234
MsaG047074 MtrunA17_Chr3g0135311 85.593 118 17 0 1 118 1 118 2.32e-74 232
MsaG047074 MtrunA17_Chr4g0054391 86.364 110 15 0 1 110 1 110 8.60e-71 221
MsaG047074 MtrunA17_Chr4g0072751 86.486 111 15 0 1 111 1 111 1.98e-69 219
MsaG047074 MtrunA17_Chr1g0151941 57.459 181 53 3 1 177 1 161 9.43e-68 212
MsaG047074 MtrunA17_Chr6g0487491 72.222 126 27 1 1 118 1 126 3.88e-62 198
MsaG047074 MtrunA17_Chr6g0452271 63.077 130 45 2 1 128 1 129 3.10e-56 185
MsaG047074 MtrunA17_Chr3g0103281 65.354 127 41 2 1 125 1 126 7.59e-56 184
MsaG047074 MtrunA17_Chr5g0410961 63.780 127 43 2 1 125 1 126 3.67e-55 182
MsaG047074 MtrunA17_Chr1g0203411 61.538 130 49 1 1 130 1 129 3.81e-55 181
MsaG047074 MtrunA17_Chr4g0039971 61.194 134 49 2 1 132 2 134 4.23e-55 182
MsaG047074 MtrunA17_Chr3g0115821 57.746 142 51 3 1 134 1 141 1.45e-54 181
MsaG047074 MtrunA17_Chr6g0453471 39.161 286 154 9 1 271 1 281 7.76e-54 179
MsaG047074 MtrunA17_Chr7g0217741 61.765 136 45 3 1 130 1 135 3.62e-53 176
MsaG047074 MtrunA17_Chr8g0349261 53.416 161 65 4 1 158 1 154 1.98e-52 174
MsaG047074 MtrunA17_Chr4g0048511 59.420 138 52 3 1 135 1 137 4.19e-52 175
MsaG047074 MtrunA17_Chr4g0042671 56.051 157 65 3 1 155 1 155 4.86e-52 176
MsaG047074 MtrunA17_Chr2g0281071 61.719 128 45 3 1 125 1 127 1.65e-51 173
MsaG047074 MtrunA17_Chr4g0037141 47.337 169 85 3 1 167 1 167 1.88e-51 171
MsaG047074 MtrunA17_Chr2g0323411 58.955 134 52 2 1 132 1 133 2.29e-51 172
MsaG047074 MtrunA17_Chr5g0395281 46.341 205 101 5 1 197 1 204 1.72e-50 169
MsaG047074 MtrunA17_Chr7g0275911 61.345 119 45 1 1 119 1 118 2.11e-50 167
MsaG047074 MtrunA17_Chr1g0187761 64.957 117 40 1 1 117 1 116 2.46e-50 167
MsaG047074 MtrunA17_Chr8g0346561 62.393 117 43 1 1 117 1 116 7.70e-50 167
MsaG047074 MtrunA17_Chr1g0167661 63.025 119 43 1 1 119 1 118 8.13e-50 166
MsaG047074 MtrunA17_Chr5g0435101 52.414 145 64 3 3 143 2 145 1.04e-49 164
MsaG047074 MtrunA17_Chr7g0217221 64.103 117 41 1 1 117 1 116 1.08e-49 166
MsaG047074 MtrunA17_Chr3g0131121 55.474 137 58 2 1 135 1 136 1.15e-49 167
MsaG047074 MtrunA17_Chr4g0060721 62.393 117 43 1 1 117 2 117 1.27e-49 168
MsaG047074 MtrunA17_Chr4g0070611 56.923 130 55 1 1 130 1 129 2.81e-49 166
MsaG047074 MtrunA17_Chr1g0167691 61.017 118 45 1 1 118 1 117 4.31e-49 164
MsaG047074 MtrunA17_Chr4g0070641 56.923 130 55 1 1 130 1 129 7.94e-49 160
MsaG047074 MtrunA17_Chr3g0092401 61.667 120 45 1 1 120 2 120 2.80e-48 164
MsaG047074 MtrunA17_Chr1g0193371 64.103 117 41 1 1 117 1 116 5.60e-48 164
MsaG047074 MtrunA17_Chr8g0385321 61.538 117 44 1 1 117 1 116 8.02e-48 162
MsaG047074 MtrunA17_Chr4g0068061 59.829 117 46 1 1 117 1 116 1.62e-47 162
MsaG047074 MtrunA17_Chr7g0254411 51.634 153 66 3 1 153 1 145 3.05e-47 162
MsaG047074 MtrunA17_Chr3g0121241 56.911 123 50 2 5 125 35 156 3.15e-47 160
MsaG047074 MtrunA17_Chr1g0193801 63.248 117 42 1 1 117 1 116 4.15e-47 162
MsaG047074 MtrunA17_Chr6g0453211 63.964 111 39 1 1 111 1 110 4.41e-47 160
MsaG047074 MtrunA17_Chr7g0261281 60.684 117 45 1 1 117 1 116 5.98e-47 159
MsaG047074 MtrunA17_Chr7g0274581 54.198 131 59 1 1 131 1 130 6.82e-47 157
MsaG047074 MtrunA17_Chr4g0058631 57.480 127 51 2 1 125 1 126 7.53e-47 161
MsaG047074 MtrunA17_Chr4g0057031 57.480 127 51 2 1 125 1 126 1.47e-46 158
MsaG047074 MtrunA17_Chr7g0270891 63.248 117 42 1 1 117 1 116 1.51e-46 160
MsaG047074 MtrunA17_Chr8g0387421 58.120 117 48 1 1 117 1 116 3.24e-46 159
MsaG047074 MtrunA17_Chr4g0022931 59.322 118 46 2 1 117 1 117 3.63e-46 157
MsaG047074 MtrunA17_Chr3g0117091 56.489 131 54 2 1 129 1 130 5.04e-46 159
MsaG047074 MtrunA17_Chr2g0323351 59.322 118 47 1 1 118 1 117 7.50e-46 155
MsaG047074 MtrunA17_Chr4g0022891 61.404 114 43 1 1 114 1 113 1.00e-45 155
MsaG047074 MtrunA17_Chr7g0228891 55.385 130 55 2 1 128 1 129 1.31e-45 155
MsaG047074 MtrunA17_Chr3g0110351 55.385 130 55 2 1 128 1 129 1.54e-45 156
MsaG047074 MtrunA17_Chr5g0434571 55.385 130 55 2 1 128 37 165 2.20e-45 157
MsaG047074 MtrunA17_Chr4g0022901 49.673 153 71 4 1 151 1 149 2.64e-45 155
MsaG047074 MtrunA17_Chr2g0311221 60.909 110 42 1 2 111 4 112 3.00e-45 156
MsaG047074 MtrunA17_Chr2g0309911 55.639 133 52 3 6 136 5 132 3.00e-45 156
MsaG047074 MtrunA17_Chr5g0397231 59.459 111 44 1 1 111 1 110 6.06e-45 155
MsaG047074 MtrunA17_Chr1g0211161 55.039 129 55 2 3 129 4 131 8.94e-45 152
MsaG047074 MtrunA17_Chr2g0330041 52.518 139 59 3 1 137 1 134 1.40e-44 156
MsaG047074 MtrunA17_Chr7g0271241 64.545 110 38 1 1 110 1 109 1.73e-44 155
MsaG047074 MtrunA17_Chr8g0342541 49.669 151 69 3 1 150 1 145 2.08e-44 154
MsaG047074 MtrunA17_Chr8g0342521 52.593 135 58 2 1 135 1 129 2.02e-43 152
MsaG047074 MtrunA17_Chr8g0342481 55.932 118 52 0 1 118 1 118 2.05e-43 153
MsaG047074 MtrunA17_Chr4g0022911 54.167 120 53 2 1 119 1 119 3.94e-43 150
MsaG047074 MtrunA17_Chr4g0022881 40.670 209 107 6 1 194 1 207 6.42e-42 145
MsaG047074 MtrunA17_Chr5g0417821 58.621 116 45 2 12 125 7 121 8.76e-42 146
MsaG047074 MtrunA17_Chr4g0044421 51.852 135 59 4 3 132 2 135 9.45e-42 143
MsaG047074 MtrunA17_Chr1g0194951 55.556 117 51 1 1 117 1 116 2.25e-41 147
MsaG047074 MtrunA17_Chr3g0099131 57.522 113 47 1 10 122 39 150 3.32e-41 150
MsaG047074 MtrunA17_Chr1g0203441 58.475 118 47 2 1 117 1 117 5.76e-41 144
MsaG047074 MtrunA17_Chr7g0269831 58.974 117 47 1 1 117 1 116 1.17e-40 145
MsaG047074 MtrunA17_Chr2g0328771 56.881 109 46 1 12 120 20 127 5.33e-40 142
MsaG047074 MtrunA17_Chr6g0470971 53.333 135 62 1 4 138 6 139 5.39e-40 141
MsaG047074 MtrunA17_Chr4g0032401 56.881 109 46 1 12 120 17 124 7.06e-39 140
MsaG047074 MtrunA17_Chr8g0354661 54.955 111 49 1 12 122 37 146 1.15e-38 143
MsaG047074 MtrunA17_Chr3g0080861 54.054 111 50 1 12 122 37 146 1.31e-38 142
MsaG047074 MtrunA17_Chr3g0088461 56.364 110 47 1 8 117 18 126 1.46e-38 139
MsaG047074 MtrunA17_Chr4g0055981 57.407 108 45 1 9 116 52 158 4.61e-38 135
MsaG047074 MtrunA17_Chr8g0343831 56.410 117 46 2 1 117 1 112 6.54e-38 135
MsaG047074 MtrunA17_Chr2g0322521 56.140 114 49 1 9 122 26 138 1.04e-37 138
MsaG047074 MtrunA17_Chr1g0186061 59.615 104 41 1 13 116 21 123 1.11e-37 134
MsaG047074 MtrunA17_Chr7g0228231 57.009 107 45 1 11 117 13 118 1.65e-37 132
MsaG047074 MtrunA17_Chr6g0450101 52.941 119 53 2 1 117 1 118 1.82e-37 132
MsaG047074 MtrunA17_Chr1g0194301 53.982 113 51 1 8 120 29 140 3.23e-37 134
MsaG047074 MtrunA17_Chr5g0434931 57.009 107 45 1 12 118 35 140 6.09e-37 133
MsaG047074 MtrunA17_Chr1g0180391 56.481 108 46 1 10 117 17 123 1.01e-36 131
MsaG047074 MtrunA17_Chr5g0434911 54.464 112 50 1 7 118 16 126 2.19e-36 132
MsaG047074 MtrunA17_Chr1g0168661 56.075 107 46 1 13 119 22 127 2.80e-36 131
MsaG047074 MtrunA17_Chr1g0194291 53.982 113 51 1 8 120 17 128 3.16e-36 131
MsaG047074 MtrunA17_Chr7g0240821 58.824 102 41 1 16 117 5 105 4.87e-36 129
MsaG047074 MtrunA17_Chr1g0209661 53.211 109 50 1 12 120 27 134 5.30e-36 132
MsaG047074 MtrunA17_Chr1g0192411 48.387 124 63 1 8 131 8 130 1.51e-35 132
MsaG047074 MtrunA17_Chr4g0042611 60.674 89 34 1 1 89 1 88 3.82e-35 122
MsaG047074 MtrunA17_Chr7g0220341 56.881 109 44 2 12 118 25 132 9.22e-35 127
MsaG047074 MtrunA17_Chr7g0228991 56.075 107 46 1 12 118 29 134 1.19e-34 127
MsaG047074 MtrunA17_Chr5g0440781 54.464 112 48 3 10 120 10 119 1.42e-34 124
MsaG047074 MtrunA17_Chr5g0434831 54.206 107 48 1 12 118 7 112 2.15e-34 124
MsaG047074 MtrunA17_Chr1g0154031 48.413 126 59 2 12 137 76 195 6.34e-34 128
MsaG047074 MtrunA17_Chr5g0440761 54.464 112 48 3 10 120 10 119 6.92e-34 125
MsaG047074 MtrunA17_Chr5g0441141 54.464 112 48 3 10 120 10 119 8.01e-34 125
MsaG047074 MtrunA17_Chr8g0360111 54.808 104 46 1 10 113 23 125 3.52e-33 123
MsaG047074 MtrunA17_Chr5g0434841 52.336 107 50 1 12 118 20 125 1.53e-32 122
MsaG047074 MtrunA17_Chr2g0327821 40.268 149 82 2 12 154 6 153 3.11e-32 119
MsaG047074 MtrunA17_Chr4g0068921 52.778 108 50 1 8 115 20 126 3.74e-32 118
MsaG047074 MtrunA17_Chr7g0247131 59.302 86 33 1 45 128 10 95 3.93e-32 120
MsaG047074 MtrunA17_Chr5g0441131 41.916 167 90 5 10 174 7 168 7.44e-32 117
MsaG047074 MtrunA17_Chr8g0334881 49.565 115 55 3 8 121 6 118 7.61e-32 120
MsaG047074 MtrunA17_Chr2g0293911 51.327 113 54 1 8 120 20 131 8.41e-32 121
MsaG047074 MtrunA17_Chr2g0294811 55.914 93 40 1 1 93 1 92 3.04e-31 113
MsaG047074 MtrunA17_Chr3g0099141 56.818 88 37 1 8 95 36 122 1.27e-30 112
MsaG047074 MtrunA17_Chr5g0401731 50.926 108 51 2 14 121 15 120 4.88e-30 116
MsaG047074 MtrunA17_Chr4g0013361 48.624 109 54 2 8 115 6 113 6.40e-30 115
MsaG047074 MtrunA17_Chr4g0053431 41.667 144 82 2 14 157 5 146 1.88e-29 113
MsaG047074 MtrunA17_Chr5g0395221 56.180 89 38 1 1 89 1 88 2.00e-29 107
MsaG047074 MtrunA17_Chr8g0342461 54.444 90 41 0 1 90 1 90 2.31e-29 109
MsaG047074 MtrunA17_Chr8g0342471 54.444 90 41 0 1 90 1 90 6.28e-29 108
MsaG047074 MtrunA17_Chr8g0342511 56.322 87 37 1 1 87 1 86 7.29e-29 106
MsaG047074 MtrunA17_Chr4g0008551 52.427 103 47 2 14 116 38 138 7.40e-29 113
MsaG047074 MtrunA17_Chr6g0454921 49.074 108 53 2 14 121 15 120 8.42e-29 110
MsaG047074 MtrunA17_Chr4g0030881 45.946 111 52 2 13 116 8 117 9.22e-29 111
MsaG047074 MtrunA17_Chr8g0342531 54.444 90 40 1 1 90 1 89 4.81e-28 106
MsaG047074 MtrunA17_Chr3g0133601 49.541 109 53 2 8 116 31 137 9.68e-28 107
MsaG047074 MtrunA17_Chr2g0323321 49.462 93 45 2 1 93 1 91 1.41e-26 101
MsaG047074 MtrunA17_Chr6g0480581 36.310 168 92 8 14 173 4 164 1.27e-25 102
MsaG047074 MtrunA17_Chr5g0429661 37.870 169 94 6 14 179 122 282 5.38e-25 103
MsaG047074 MtrunA17_Chr3g0093811 53.763 93 38 2 38 125 4 96 5.93e-25 101
MsaG047074 MtrunA17_Chr5g0434901 61.765 68 26 0 47 114 7 74 7.67e-24 94.4
MsaG047074 MtrunA17_Chr5g0425591 50.000 88 42 2 10 96 7 93 2.13e-23 92.0
MsaG047074 MtrunA17_Chr4g0058991 42.593 108 60 2 9 116 204 309 1.75e-22 97.4
MsaG047074 MtrunA17_Chr7g0229131 54.795 73 33 0 46 118 5 77 1.96e-22 92.0
MsaG047074 MtrunA17_Chr7g0229101 58.571 70 29 0 45 114 4 73 2.78e-22 92.8
MsaG047074 MtrunA17_Chr4g0042501 39.568 139 75 4 14 152 105 234 6.34e-22 95.5
MsaG047074 MtrunA17_Chr7g0238631 48.077 104 52 2 14 117 113 214 9.66e-22 95.5
MsaG047074 MtrunA17_Chr6g0453751 47.368 95 40 3 11 96 19 112 1.30e-21 88.6
MsaG047074 MtrunA17_Chr6g0460661 40.741 108 62 2 14 121 16 121 2.79e-21 88.6
MsaG047074 MtrunA17_Chr5g0417621 33.333 180 106 5 14 193 134 299 5.24e-21 92.8
MsaG047074 MtrunA17_Chr3g0117511 41.667 108 61 2 9 116 178 283 7.09e-21 92.4
MsaG047074 MtrunA17_Chr5g0437321 46.000 100 52 2 14 113 19 116 5.36e-20 88.2
MsaG047074 MtrunA17_Chr3g0125801 40.367 109 63 2 8 116 10 116 7.00e-20 87.8
MsaG047074 MtrunA17_Chr3g0139671 40.496 121 65 3 14 129 85 203 2.01e-19 89.0
MsaG047074 MtrunA17_Chr3g0139671 35.644 101 62 3 14 113 33 131 7.65e-11 63.2
MsaG047074 MtrunA17_Chr1g0157731 41.667 108 61 2 14 121 91 196 8.35e-19 87.0
MsaG047074 MtrunA17_Chr7g0254261 37.594 133 65 4 14 146 89 203 8.54e-19 85.9
MsaG047074 MtrunA17_Chr6g0460671 39.815 108 63 2 14 121 99 204 1.43e-18 85.1
MsaG047074 MtrunA17_Chr5g0397841 46.000 100 52 2 11 110 107 204 2.16e-18 85.5
MsaG047074 MtrunA17_Chr7g0238651 40.625 96 56 1 17 111 10 105 1.06e-17 82.8
MsaG047074 MtrunA17_Chr7g0228401 43.678 87 47 2 25 111 290 374 1.44e-17 83.2
MsaG047074 MtrunA17_Chr7g0228531 38.679 106 62 3 11 116 217 319 2.62e-17 82.0
MsaG047074 MtrunA17_Chr1g0177901 33.333 141 89 2 34 169 12 152 5.78e-17 78.2
MsaG047074 MtrunA17_Chr8g0362231 39.806 103 60 2 17 119 25 125 2.65e-15 76.3
MsaG047074 MtrunA17_Chr5g0416341 40.000 100 58 2 17 116 29 126 5.03e-15 75.5
MsaG047074 MtrunA17_Chr7g0233061 35.135 111 65 3 10 117 176 282 6.73e-15 74.3
MsaG047074 MtrunA17_Chr7g0228481 34.848 132 79 5 11 138 217 345 9.87e-15 74.3
MsaG047074 MtrunA17_Chr1g0193901 55.932 59 24 2 12 69 11 68 2.85e-14 68.2
MsaG047074 MtrunA17_Chr1g0193891 55.932 59 24 2 12 69 11 68 2.85e-14 68.2
MsaG047074 MtrunA17_Chr1g0193871 55.932 59 24 2 12 69 11 68 2.85e-14 68.2
MsaG047074 MtrunA17_Chr1g0193881 55.932 59 24 2 12 69 11 68 2.85e-14 68.2
MsaG047074 MtrunA17_Chr7g0247141 57.447 47 20 0 1 47 1 47 3.57e-13 63.5
MsaG047074 MtrunA17_Chr5g0434871 53.333 45 21 0 75 119 2 46 1.50e-11 59.3
MsaG047074 MtrunA17_Chr4g0024181 48.837 43 22 0 70 112 27 69 8.16e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG047074 AT5G57620.1 88.136 118 14 0 1 118 1 118 2.68e-76 237
MsaG047074 AT5G65790.1 88.235 119 14 0 1 119 1 119 4.82e-76 238
MsaG047074 AT3G49690.1 86.555 119 16 0 1 119 1 119 4.36e-75 233
MsaG047074 AT5G23000.1 83.898 118 19 0 1 118 1 118 1.67e-72 227
MsaG047074 AT4G37780.1 82.203 118 21 0 1 118 1 118 2.83e-71 223
MsaG047074 AT5G56110.1 65.354 127 41 2 1 125 1 126 1.63e-56 186
MsaG047074 AT3G01140.2 52.198 182 82 3 1 178 1 181 3.77e-56 186
MsaG047074 AT5G15310.4 64.567 127 42 2 1 125 1 126 1.74e-54 178
MsaG047074 AT5G15310.2 47.005 217 99 6 1 204 1 214 2.96e-54 179
MsaG047074 AT5G15310.1 64.567 127 42 2 1 125 1 126 3.17e-54 180
MsaG047074 AT4G21440.1 57.534 146 57 3 1 142 1 145 2.20e-53 178
MsaG047074 AT3G01140.1 51.397 179 82 3 4 178 47 224 5.18e-53 179
MsaG047074 AT1G35515.1 56.115 139 57 3 1 136 1 138 6.90e-53 173
MsaG047074 AT4G09460.1 58.462 130 51 2 1 128 1 129 7.26e-53 174
MsaG047074 AT3G61250.1 59.398 133 51 2 1 131 1 132 1.10e-52 175
MsaG047074 AT5G61420.2 53.488 172 71 4 1 170 1 165 2.05e-52 176
MsaG047074 AT4G28110.1 64.407 118 41 1 1 118 1 117 2.10e-52 174
MsaG047074 AT3G02940.2 58.209 134 53 2 1 132 1 133 2.11e-52 175
MsaG047074 AT4G38620.1 46.961 181 93 2 1 179 1 180 2.39e-52 174
MsaG047074 AT5G16770.4 60.630 127 47 2 1 125 1 126 3.79e-52 174
MsaG047074 AT5G16770.3 60.630 127 47 2 1 125 1 126 3.79e-52 174
MsaG047074 AT4G05100.1 62.500 128 44 3 1 125 1 127 3.90e-52 174
MsaG047074 AT3G02940.1 58.209 134 53 2 1 132 1 133 4.46e-52 174
MsaG047074 AT3G02940.3 58.209 134 53 2 1 132 1 133 4.46e-52 174
MsaG047074 AT1G22640.1 58.462 130 51 2 1 128 1 129 7.47e-52 172
MsaG047074 AT5G16770.1 60.630 127 47 2 1 125 1 126 1.01e-51 174
MsaG047074 AT5G16770.2 60.630 127 47 2 1 125 1 126 1.01e-51 174
MsaG047074 AT3G47600.1 53.012 166 64 2 1 166 1 152 3.47e-51 172
MsaG047074 AT3G28470.1 36.102 313 174 6 1 304 1 296 1.32e-50 170
MsaG047074 AT1G34670.1 61.417 127 46 2 1 125 1 126 1.68e-50 171
MsaG047074 AT4G17785.2 62.500 128 44 3 1 125 1 127 1.88e-50 171
MsaG047074 AT5G65230.1 61.417 127 46 2 1 125 1 126 2.45e-50 169
MsaG047074 AT4G17785.1 62.500 128 44 3 1 125 1 127 2.65e-50 171
MsaG047074 AT5G62470.2 63.333 120 43 1 1 120 1 119 2.70e-50 171
MsaG047074 AT1G79180.1 64.655 116 40 1 2 117 4 118 3.04e-50 169
MsaG047074 AT3G23250.1 58.268 127 52 1 1 127 1 126 5.38e-50 167
MsaG047074 AT2G16720.1 49.367 158 76 3 1 156 1 156 5.43e-50 167
MsaG047074 AT5G10280.1 59.055 127 49 2 1 125 1 126 6.39e-50 169
MsaG047074 AT5G60890.1 64.103 117 41 1 1 117 1 116 8.01e-50 167
MsaG047074 AT5G07690.1 60.630 127 47 2 1 125 1 126 1.14e-49 168
MsaG047074 AT2G31180.1 62.393 117 43 1 1 117 1 116 4.61e-49 164
MsaG047074 AT1G74650.1 63.559 118 42 1 1 118 1 117 6.21e-49 166
MsaG047074 AT4G34990.1 56.923 130 53 2 1 128 1 129 1.16e-48 164
MsaG047074 AT3G28910.1 60.800 125 48 1 1 125 1 124 1.21e-48 165
MsaG047074 AT4G12350.1 56.934 137 56 2 1 135 1 136 1.26e-48 164
MsaG047074 AT1G57560.1 49.171 181 81 4 1 177 1 174 1.27e-48 165
MsaG047074 AT1G16490.1 62.931 116 42 1 2 117 4 118 1.41e-48 164
MsaG047074 AT1G18570.1 58.015 131 51 3 1 128 1 130 1.67e-48 166
MsaG047074 AT1G08810.1 46.524 187 94 3 1 182 1 186 2.09e-48 163
MsaG047074 AT1G57560.2 44.737 228 89 7 1 202 1 217 3.06e-48 163
MsaG047074 AT4G01680.3 64.103 117 41 1 1 117 1 116 5.42e-48 161
MsaG047074 AT1G56160.1 62.931 116 42 1 2 117 4 118 7.70e-48 162
MsaG047074 AT4G22680.1 47.368 171 68 4 1 169 1 151 8.26e-48 161
MsaG047074 AT5G62470.1 62.500 120 43 2 1 120 1 118 1.21e-47 164
MsaG047074 AT4G01680.1 64.103 117 41 1 1 117 1 116 1.59e-47 163
MsaG047074 AT5G26660.1 57.252 131 53 2 1 129 1 130 1.63e-47 163
MsaG047074 AT1G09540.1 46.739 184 89 3 1 182 1 177 1.91e-47 163
MsaG047074 AT5G07700.1 46.809 188 88 5 1 184 1 180 4.03e-47 162
MsaG047074 AT5G07700.2 46.809 188 88 5 1 184 1 180 4.03e-47 162
MsaG047074 AT3G62610.1 56.923 130 53 2 1 128 1 129 4.14e-47 162
MsaG047074 AT1G63910.1 59.829 117 46 1 1 117 1 116 5.84e-47 162
MsaG047074 AT1G06180.1 62.393 117 43 1 1 117 1 116 7.34e-47 158
MsaG047074 AT5G54230.1 53.846 156 65 4 1 150 1 155 9.34e-47 160
MsaG047074 AT5G62320.1 54.545 132 52 2 2 125 3 134 1.72e-46 157
MsaG047074 AT1G74080.1 55.725 131 55 2 1 129 1 130 4.06e-46 159
MsaG047074 AT2G47460.1 56.198 121 52 1 1 121 1 120 5.61e-46 160
MsaG047074 AT3G13540.1 54.331 127 55 2 4 128 15 140 1.43e-45 155
MsaG047074 AT3G13890.2 58.475 118 48 1 1 118 1 117 1.86e-45 158
MsaG047074 AT1G66230.1 54.615 130 56 2 1 128 1 129 3.49e-45 155
MsaG047074 AT5G49330.1 53.788 132 57 2 1 129 1 131 4.28e-45 157
MsaG047074 AT3G12820.1 60.345 116 45 1 3 118 5 119 1.83e-44 152
MsaG047074 AT5G16600.1 56.693 127 52 2 1 125 1 126 2.47e-44 154
MsaG047074 AT4G01680.2 58.140 129 41 2 1 117 1 128 3.51e-44 154
MsaG047074 AT3G12720.1 55.285 123 52 2 6 126 16 137 8.73e-44 152
MsaG047074 AT1G79180.2 50.336 149 40 2 2 117 4 151 1.30e-43 152
MsaG047074 AT5G14340.1 56.250 128 51 4 1 125 13 138 3.25e-43 150
MsaG047074 AT3G13890.1 54.331 127 48 2 1 118 1 126 1.68e-42 150
MsaG047074 AT1G74430.1 55.118 127 54 2 1 125 1 126 2.51e-42 147
MsaG047074 AT1G18710.1 50.370 135 64 2 1 133 1 134 5.41e-42 146
MsaG047074 AT5G52600.1 58.333 108 44 1 9 116 9 115 5.88e-40 139
MsaG047074 AT2G32460.2 55.856 111 48 1 12 122 6 115 5.96e-40 146
MsaG047074 AT2G32460.1 55.856 111 48 1 12 122 18 127 6.34e-40 146
MsaG047074 AT5G55020.1 52.941 119 55 1 12 130 26 143 1.09e-39 146
MsaG047074 AT3G27810.1 40.314 191 107 3 9 199 17 200 2.68e-39 138
MsaG047074 AT5G06100.1 55.652 115 50 1 8 122 28 141 2.81e-39 144
MsaG047074 AT5G14750.1 56.190 105 45 1 13 117 17 120 4.11e-39 137
MsaG047074 AT5G40330.1 56.190 105 45 1 13 117 13 116 8.01e-39 137
MsaG047074 AT5G06100.5 55.652 115 50 1 8 122 28 141 9.35e-39 143
MsaG047074 AT5G06100.2 55.652 115 50 1 8 122 28 141 9.35e-39 143
MsaG047074 AT5G06100.3 55.652 115 50 1 8 122 28 141 9.35e-39 143
MsaG047074 AT5G06100.4 55.652 115 50 1 8 122 28 141 9.35e-39 143
MsaG047074 AT5G12870.1 57.547 106 44 1 12 117 18 122 1.19e-38 138
MsaG047074 AT5G40350.1 44.505 182 83 5 10 175 15 194 1.28e-38 136
MsaG047074 AT4G26930.1 44.737 152 76 3 12 161 19 164 1.80e-38 140
MsaG047074 AT3G27920.1 55.660 106 46 1 13 118 15 119 3.12e-38 135
MsaG047074 AT5G35550.1 54.128 109 49 1 9 117 11 118 6.08e-38 135
MsaG047074 AT3G01530.1 52.727 110 51 1 8 117 21 129 1.21e-37 133
MsaG047074 AT3G11440.2 51.754 114 54 1 9 122 38 150 1.24e-37 139
MsaG047074 AT3G11440.3 51.754 114 54 1 9 122 38 150 4.98e-37 139
MsaG047074 AT3G11440.4 51.754 114 54 1 9 122 38 150 4.98e-37 139
MsaG047074 AT3G11440.1 51.754 114 54 1 9 122 38 150 4.98e-37 139
MsaG047074 AT1G48000.1 58.654 104 42 1 12 115 32 134 9.41e-37 132
MsaG047074 AT3G08500.1 55.455 110 48 1 8 117 26 134 1.31e-36 134
MsaG047074 AT4G13480.1 58.654 104 42 1 13 116 7 109 5.09e-36 130
MsaG047074 AT5G52260.1 55.652 115 50 1 9 123 9 122 5.10e-36 131
MsaG047074 AT3G24310.1 57.692 104 43 1 13 116 19 121 6.87e-36 130
MsaG047074 AT4G25560.1 55.660 106 46 1 13 118 11 115 3.52e-35 129
MsaG047074 AT2G26960.1 51.402 107 51 1 9 115 17 122 4.37e-35 132
MsaG047074 AT3G48920.1 53.271 107 49 1 9 115 15 120 1.24e-34 127
MsaG047074 AT1G25340.1 50.413 121 57 2 10 128 16 135 2.21e-34 127
MsaG047074 AT1G66370.1 50.862 116 52 2 1 116 1 111 2.34e-34 126
MsaG047074 AT1G66380.1 56.190 105 45 1 12 116 8 111 8.28e-34 121
MsaG047074 AT3G30210.1 55.340 103 45 1 13 115 28 129 2.41e-33 124
MsaG047074 AT2G47190.1 48.673 113 57 1 8 120 16 127 3.31e-33 124
MsaG047074 AT1G68320.1 51.376 109 52 1 12 120 19 126 8.47e-33 123
MsaG047074 AT1G66390.1 55.238 105 46 1 12 116 8 111 1.37e-32 121
MsaG047074 AT1G56650.1 55.238 105 46 1 12 116 8 111 2.38e-32 120
MsaG047074 AT3G53200.1 44.295 149 77 3 12 158 9 153 5.28e-32 119
MsaG047074 AT3G06490.1 53.982 113 51 1 8 120 15 126 6.10e-32 121
MsaG047074 AT5G49620.1 52.212 113 53 1 8 120 22 133 8.27e-31 118
MsaG047074 AT5G59780.3 49.038 104 52 1 13 116 9 111 3.15e-30 115
MsaG047074 AT3G60460.1 47.368 114 57 3 9 121 8 119 4.54e-30 116
MsaG047074 AT3G46130.1 49.038 104 52 1 13 116 10 112 4.55e-30 115
MsaG047074 AT5G26660.2 60.759 79 31 0 39 117 7 85 1.01e-29 115
MsaG047074 AT1G25340.2 47.934 121 55 3 10 128 16 130 2.42e-29 113
MsaG047074 AT1G25340.3 47.934 121 55 3 10 128 16 130 4.23e-29 113
MsaG047074 AT2G26950.1 42.735 117 63 2 9 122 13 128 1.58e-28 113
MsaG047074 AT3G47600.2 49.587 121 48 1 46 166 39 146 3.42e-28 111
MsaG047074 AT5G14750.3 58.228 79 30 1 39 117 11 86 3.64e-28 107
MsaG047074 AT4G37260.1 53.398 103 46 2 14 116 13 113 5.60e-28 110
MsaG047074 AT3G50060.1 50.467 107 51 2 10 116 2 106 8.65e-28 110
MsaG047074 AT5G35550.2 59.494 79 32 0 39 117 43 121 1.12e-27 108
MsaG047074 AT2G23290.1 53.398 103 46 2 14 116 13 113 1.53e-27 109
MsaG047074 AT5G67300.1 49.533 107 52 2 10 116 2 106 1.76e-27 109
MsaG047074 AT5G49620.2 46.457 127 53 2 8 120 22 147 3.02e-27 108
MsaG047074 AT3G27810.2 37.662 154 90 2 46 199 4 151 5.99e-27 104
MsaG047074 AT3G55730.1 51.402 107 50 2 14 120 56 160 2.31e-26 107
MsaG047074 AT5G40350.2 42.466 146 67 4 46 175 5 149 2.51e-26 102
MsaG047074 AT3G53200.2 46.154 117 58 2 44 158 7 120 4.64e-26 103
MsaG047074 AT1G18960.1 42.188 128 66 4 14 141 10 129 2.43e-25 103
MsaG047074 AT3G09230.1 45.794 107 56 2 14 120 55 159 5.23e-25 103
MsaG047074 AT3G46130.3 58.333 72 30 0 45 116 9 80 6.07e-25 100
MsaG047074 AT5G59780.2 57.534 73 31 0 44 116 18 90 6.12e-25 100
MsaG047074 AT3G12820.2 61.429 70 27 0 49 118 2 71 7.87e-25 99.4
MsaG047074 AT3G46130.4 57.534 73 31 0 44 116 18 90 9.38e-25 100
MsaG047074 AT2G39880.1 49.515 103 50 2 14 116 50 150 1.66e-24 102
MsaG047074 AT1G66380.3 62.500 72 27 0 45 116 7 78 2.69e-24 95.5
MsaG047074 AT3G27785.1 45.370 108 57 2 9 116 184 289 4.47e-24 102
MsaG047074 AT1G69560.1 43.119 109 60 2 9 117 102 208 1.40e-23 99.4
MsaG047074 AT1G69560.2 43.119 109 60 2 9 117 118 224 1.62e-23 99.4
MsaG047074 AT4G18770.1 43.119 109 60 2 9 117 212 318 2.97e-23 99.8
MsaG047074 AT2G25230.1 45.045 111 58 3 9 119 21 128 3.87e-23 95.9
MsaG047074 AT1G17950.1 29.386 228 125 8 14 237 5 200 5.92e-23 95.9
MsaG047074 AT5G40360.1 43.269 104 57 2 12 115 156 257 6.01e-23 97.8
MsaG047074 AT5G58850.1 42.453 106 59 2 11 116 102 205 2.74e-22 97.1
MsaG047074 AT1G22640.3 52.778 72 32 1 59 128 1 72 1.45e-21 90.9
MsaG047074 AT3G09370.2 45.631 103 54 2 14 116 135 235 2.99e-21 94.4
MsaG047074 AT3G09370.1 45.631 103 54 2 14 116 130 230 3.33e-21 94.4
MsaG047074 AT5G11050.1 40.566 106 61 2 11 116 102 205 3.43e-21 93.6
MsaG047074 AT3G09370.3 45.631 103 54 2 14 116 143 243 3.46e-21 94.4
MsaG047074 AT5G02320.1 46.154 104 54 2 14 117 127 228 3.91e-21 94.0
MsaG047074 AT5G02320.2 46.154 104 54 2 14 117 127 228 3.91e-21 94.0
MsaG047074 AT5G02320.3 46.154 104 54 2 14 117 67 168 4.49e-21 93.6
MsaG047074 AT1G26780.1 33.158 190 95 6 14 178 98 280 5.00e-21 91.3
MsaG047074 AT1G26780.2 32.609 184 92 6 14 172 98 274 1.42e-20 91.3
MsaG047074 AT1G73410.1 43.689 103 56 2 14 116 6 106 2.08e-20 89.0
MsaG047074 AT1G71030.2 44.000 100 47 2 52 149 5 97 2.30e-20 87.0
MsaG047074 AT1G71030.1 44.000 100 47 2 52 149 19 111 3.25e-20 87.0
MsaG047074 AT1G73410.2 43.689 103 56 2 14 116 6 106 4.03e-20 87.0
MsaG047074 AT5G17800.1 40.777 103 59 2 14 116 93 193 7.01e-20 89.0
MsaG047074 AT3G29020.1 37.398 123 72 3 14 136 65 182 2.05e-19 85.9
MsaG047074 AT1G66380.2 47.561 82 42 1 12 93 8 88 4.11e-19 81.6
MsaG047074 AT3G23250.2 56.250 64 28 0 59 122 1 64 4.71e-19 84.7
MsaG047074 AT3G29020.2 35.252 139 81 4 14 148 67 200 5.57e-19 85.9
MsaG047074 AT4G33450.1 38.889 108 64 2 9 116 14 119 5.66e-19 85.1
MsaG047074 AT5G40430.1 38.333 120 70 3 9 128 49 164 1.00e-18 84.3
MsaG047074 AT5G14750.4 55.932 59 26 0 59 117 1 59 1.44e-18 81.3
MsaG047074 AT5G14750.2 55.932 59 26 0 59 117 1 59 1.44e-18 81.3
MsaG047074 AT4G32730.1 41.346 104 59 2 14 117 87 188 1.54e-18 86.7
MsaG047074 AT4G32730.5 41.346 104 59 2 14 117 87 188 1.58e-18 86.7
MsaG047074 AT4G32730.4 41.346 104 59 2 14 117 87 188 1.58e-18 86.7
MsaG047074 AT4G32730.3 41.346 104 59 2 14 117 87 188 1.58e-18 86.7
MsaG047074 AT4G32730.2 41.346 104 59 2 14 117 87 188 1.58e-18 86.7
MsaG047074 AT5G11510.2 40.385 104 60 2 14 117 81 182 4.20e-18 85.5
MsaG047074 AT5G11510.3 40.385 104 60 2 14 117 81 182 4.55e-18 85.5
MsaG047074 AT5G11510.1 40.385 104 60 2 14 117 81 182 4.55e-18 85.5
MsaG047074 AT5G11510.4 40.385 104 60 2 14 117 81 182 4.55e-18 85.5
MsaG047074 AT5G11510.5 40.385 104 60 2 14 117 81 182 4.81e-18 85.1
MsaG047074 AT1G14350.2 42.000 100 56 2 17 116 28 125 7.58e-16 78.2
MsaG047074 AT1G14350.1 42.000 100 56 2 17 116 28 125 7.58e-16 78.2
MsaG047074 AT4G00540.2 38.889 108 63 2 12 117 101 207 1.50e-15 77.0
MsaG047074 AT2G02820.1 41.000 100 57 2 17 116 33 130 1.59e-15 77.4
MsaG047074 AT2G02820.3 41.000 100 57 2 17 116 33 130 1.67e-15 76.3
MsaG047074 AT2G02820.2 41.000 100 57 2 17 116 33 130 1.92e-15 77.0
MsaG047074 AT2G37630.1 36.066 122 74 3 17 136 7 126 1.94e-15 76.6
MsaG047074 AT4G00540.1 38.889 108 63 2 12 117 99 205 2.32e-15 76.6
MsaG047074 AT5G39700.1 35.514 107 67 2 9 115 51 155 4.59e-13 67.4
MsaG047074 AT5G61420.1 45.055 91 42 3 82 170 2 86 1.01e-11 65.1
MsaG047074 AT5G59780.1 58.140 43 18 0 74 116 4 46 2.50e-11 62.0
MsaG047074 AT3G46130.2 58.140 43 18 0 74 116 4 46 3.62e-11 62.0
MsaG047074 AT4G25560.2 55.319 47 21 0 72 118 3 49 4.45e-11 62.0
MsaG047074 AT3G28910.2 60.417 48 19 0 78 125 1 48 7.11e-11 62.0

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig7 gene 207177 208603 207177 ID=MsaG047074
Contig7 mRNA 207177 208603 207177 ID=MsaT047074.1;Parent=MsaG047074
Contig7 exon 207177 207312 207177 ID=MsaT047074.1.exon1;Parent=MsaT047074.1
Contig7 CDS 207177 207312 207177 ID=cds.MsaT047074.1;Parent=MsaT047074.1
Contig7 exon 207401 207530 207401 ID=MsaT047074.1.exon2;Parent=MsaT047074.1
Contig7 CDS 207401 207530 207401 ID=cds.MsaT047074.1;Parent=MsaT047074.1
Contig7 exon 207922 208603 207922 ID=MsaT047074.1.exon3;Parent=MsaT047074.1
Contig7 CDS 207922 208603 207922 ID=cds.MsaT047074.1;Parent=MsaT047074.1
Gene Sequence

>MsaT047074.1

ATGGGAAGAGCTCCTTGCTGTGACAAAGCAAATGTGAAGAAAGGACCATGGTCTCCAGAAGAAGATACAAAGCTCAAAGAGTATATAGAAAAACATGGAACTGGTGGAAATTGGATTTCTCTTCCTCAAAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATTTAAGGCCAAACATTAAGCATGGAGAATTTTCAGATGAAGAAGACAGAATCATTTGCACTCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAATTACCTGGAAGAACTGATAATGATATAAAAAACTACTGGAACACAAAACTAAAGAAGAAACTCATGAATCTTCTTCCTCAATCTCATAACACAGTCTTACCATATCTAACCTCTTCTCATTGCACCTCCTATTACAACCGAACACCAACAAACACATCTTTCACAACATCCCTTGAACAACAATTTTCTGTTCCTTCATCAAGTAGCTCAATCTCTCTCCCTTTTTACCATAACCAAGAGTCCTTACTCAATGGTTTTAGTAGTAATACTAATACTACTTCCATGCAATATCAACTTCAAAACCCTATGATGAAAGAAAGTCTTGTCATGTTTGGAAGTGAGGGAAGTTGTTGCAGTTCATCTGATGGAAGTCTTGGGAAACAAGAAGAAATAATGGGGTTTCAGAATTTCATGCAAATCAACAAGTTCAATCTTAGTCATGGAAGTGATATTGTTGATGTTAACCAATGGGAAAGAGAAAAGGTGAATTTATGCTTTAATCAAAATCATGAAAAGCAGATTACTAGTACTACACCTTTGGATTATGATCTTGAGTATATTAAGCAATTAATTACTAGTAGTAATAGTGGTAGTTGTAATAATGGTTACTTGAGTATTGATGAAAACAAGATGGAGGAGAAGACTATGTACTATTACTGA
Protein sequence

>MsaT047074.1

MGRAPCCDKANVKKGPWSPEEDTKLKEYIEKHGTGGNWISLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMNLLPQSHNTVLPYLTSSHCTSYYNRTPTNTSFTTSLEQQFSVPSSSSSISLPFYHNQESLLNGFSSNTNTTSMQYQLQNPMMKESLVMFGSEGSCCSSSDGSLGKQEEIMGFQNFMQINKFNLSHGSDIVDVNQWEREKVNLCFNQNHEKQITSTTPLDYDLEYIKQLITSSNSGSCNNGYLSIDENKMEEKTMYYY*