AlfalfaGEDB | MsaG047093

M. sativa ssp. caerulea / MsaG047093

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047093	XP_039690635.1	65.176	313	76	1	265	544	408	720	1.35e-134	420
MsaG047093	XP_039690635.1	71.587	271	72	2	7	272	29	299	5.19e-133	416

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047093	sp\|Q9M8J3\|FRS7_ARATH	31.250	224	123	3	265	458	485	707	1.35e-24	112

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047093	A0A2K3MAC5	70.909	275	77	1	1	272	26	300	1.16e-133	405

TFs/TRs:

Gene ID	Type	Classification
MsaG047093	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003188	MsaG047093	0.824687	1.249550e-53	3.116473e-51
MsaG006048	MsaG047093	0.839268	3.233132e-57	1.233492e-54
MsaG009174	MsaG047093	0.816550	9.063184e-52	1.822343e-49
MsaG009357	MsaG047093	0.807302	9.173363e-50	1.468076e-47
MsaG011226	MsaG047093	0.824754	1.205463e-53	3.011992e-51
MsaG046456	MsaG047093	0.825894	6.496939e-54	1.675277e-51
MsaG047093	MsaG037361	0.842229	5.460046e-58	2.287118e-55
MsaG047093	MsaG037822	0.834217	6.188918e-56	2.025067e-53
MsaG012736	MsaG047093	0.806359	1.448620e-49	2.267291e-47
MsaG016835	MsaG047093	0.852510	8.443053e-61	4.992593e-58
MsaG017355	MsaG047093	0.810405	2.004676e-50	3.457522e-48
MsaG017356	MsaG047093	0.834782	4.472342e-56	1.488349e-53
MsaG033921	MsaG047093	0.816270	1.046340e-51	2.088928e-49
MsaG034328	MsaG047093	0.820357	1.254937e-52	2.786334e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047093	MtrunA17_Chr1g0203051	60.870	276	101	3	3	272	28	302	3.62e-111	346
MsaG047093	MtrunA17_Chr1g0203051	43.043	230	98	1	246	442	392	621	5.04e-57	202
MsaG047093	MtrunA17_Chr2g0308841	39.013	223	103	1	265	454	4	226	2.35e-51	177
MsaG047093	MtrunA17_Chr8g0389811	47.101	138	71	1	28	163	58	195	3.43e-41	148
MsaG047093	MtrunA17_Chr2g0287651	33.333	252	161	4	37	282	58	308	7.77e-38	149
MsaG047093	MtrunA17_Chr2g0287651	32.018	228	122	1	261	455	405	632	3.03e-33	135
MsaG047093	MtrunA17_Chr8g0340801	49.524	105	53	0	163	267	1	105	2.04e-30	115
MsaG047093	MtrunA17_Chr5g0448511	26.074	349	207	6	256	563	161	499	8.31e-29	120
MsaG047093	MtrunA17_Chr2g0331371	40.625	128	74	1	35	160	36	163	4.62e-27	108
MsaG047093	MtrunA17_Chr1g0171741	36.207	174	106	3	13	182	90	262	3.93e-26	107
MsaG047093	MtrunA17_Chr5g0448761	27.848	237	137	2	265	468	403	638	2.37e-24	108
MsaG047093	MtrunA17_Chr5g0448761	28.326	233	156	6	60	282	66	297	2.66e-16	82.8
MsaG047093	MtrunA17_Chr3g0118611	30.522	249	133	6	275	488	291	534	2.62e-24	107
MsaG047093	MtrunA17_Chr1g0202341	28.319	226	128	2	263	455	385	609	2.12e-23	104
MsaG047093	MtrunA17_Chr1g0202341	22.870	223	162	6	66	282	63	281	1.61e-12	70.5
MsaG047093	MtrunA17_Chr2g0287061	26.129	310	180	6	245	520	459	753	8.01e-23	103
MsaG047093	MtrunA17_Chr6g0473421	42.105	95	53	1	35	127	36	130	1.35e-22	94.4
MsaG047093	MtrunA17_Chr1g0203721	28.862	246	132	5	253	457	382	625	1.48e-20	96.3
MsaG047093	MtrunA17_Chr5g0440451	28.241	216	117	6	275	456	394	605	2.06e-20	95.9
MsaG047093	MtrunA17_Chr6g0458391	28.509	228	128	3	261	455	540	765	7.62e-20	94.0
MsaG047093	MtrunA17_Chr6g0458391	26.190	252	156	8	3	228	42	289	5.09e-14	75.5
MsaG047093	MtrunA17_Chr6g0458391	25.225	222	124	8	66	274	237	429	3.39e-12	69.7
MsaG047093	MtrunA17_Chr1g0198761	29.915	234	142	9	66	286	59	283	4.79e-19	91.3
MsaG047093	MtrunA17_Chr1g0172931	41.818	110	62	1	27	134	49	158	6.20e-19	84.3
MsaG047093	MtrunA17_Chr2g0324011	25.551	227	133	4	266	458	347	571	5.40e-18	87.8
MsaG047093	MtrunA17_Chr2g0324011	23.767	223	160	5	66	282	22	240	3.31e-11	66.2
MsaG047093	MtrunA17_Chr1g0207551	28.571	224	125	4	265	455	368	589	5.99e-18	87.8
MsaG047093	MtrunA17_Chr3g0082121	25.191	262	147	6	236	459	344	594	2.17e-16	82.8
MsaG047093	MtrunA17_Chr2g0290391	26.512	215	141	5	66	264	63	276	5.93e-16	81.3
MsaG047093	MtrunA17_Chr2g0290391	27.650	217	127	4	276	466	412	624	9.51e-13	71.2
MsaG047093	MtrunA17_Chr5g0431001	27.615	239	153	7	60	286	67	297	6.15e-15	77.8
MsaG047093	MtrunA17_Chr8g0363841	25.207	242	167	7	66	296	29	267	1.44e-14	77.0
MsaG047093	MtrunA17_Chr2g0276841	26.389	216	138	9	60	261	76	284	1.99e-14	76.6
MsaG047093	MtrunA17_Chr7g0258861	23.982	221	163	4	66	282	22	241	1.91e-13	71.6
MsaG047093	MtrunA17_Chr2g0294841	26.070	257	169	10	60	297	51	305	1.25e-12	70.9
MsaG047093	MtrunA17_Chr7g0228051	52.308	65	28	1	2	63	21	85	9.14e-12	61.6
MsaG047093	MtrunA17_Chr3g0080351	23.009	226	135	5	265	455	402	623	1.22e-11	67.8
MsaG047093	MtrunA17_Chr2g0291591	25.862	232	140	10	66	282	76	290	5.48e-11	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047093	AT3G06250.2	31.250	224	123	3	265	458	485	707	1.37e-25	112
MsaG047093	AT3G06250.1	31.250	224	123	3	265	458	485	707	1.37e-25	112
MsaG047093	AT3G06250.3	31.250	224	123	3	265	458	485	707	1.37e-25	112
MsaG047093	AT2G27110.2	29.362	235	122	5	275	469	369	599	7.72e-25	110
MsaG047093	AT2G27110.1	29.362	235	122	5	275	469	369	599	7.72e-25	110
MsaG047093	AT2G27110.3	29.362	235	122	5	275	469	224	454	9.83e-25	109
MsaG047093	AT5G18960.2	30.357	224	125	3	265	458	509	731	1.07e-23	106
MsaG047093	AT5G18960.1	30.357	224	125	3	265	458	509	731	1.07e-23	106
MsaG047093	AT4G38170.1	29.911	224	123	2	265	455	177	399	5.53e-23	103
MsaG047093	AT4G38180.1	27.542	236	137	2	256	458	403	637	8.12e-23	103
MsaG047093	AT4G38180.1	29.130	230	154	6	60	282	79	306	8.08e-17	84.7
MsaG047093	AT5G28530.5	24.950	505	264	17	66	464	67	562	1.13e-22	102
MsaG047093	AT5G28530.4	23.866	507	271	16	66	464	67	566	2.74e-22	101
MsaG047093	AT5G28530.1	27.668	253	157	9	66	294	67	317	4.15e-20	95.1
MsaG047093	AT5G28530.3	27.668	253	157	9	66	294	67	317	4.38e-20	94.7
MsaG047093	AT5G28530.2	27.668	253	157	9	66	294	67	317	4.38e-20	94.7
MsaG047093	AT3G22170.2	26.840	231	136	3	257	455	389	618	1.72e-18	90.1
MsaG047093	AT3G22170.1	26.840	231	136	3	257	455	389	618	1.72e-18	90.1
MsaG047093	AT1G10240.2	28.910	211	129	10	65	261	59	262	2.67e-16	82.8
MsaG047093	AT1G10240.1	28.910	211	129	10	65	261	59	262	2.67e-16	82.8

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Contig7	gene	435766	437971	435766	ID=MsaG047093
Contig7	mRNA	435766	437971	435766	ID=MsaT047093.1;Parent=MsaG047093
Contig7	exon	435766	436552	435766	ID=MsaT047093.1.exon3;Parent=MsaT047093.1
Contig7	CDS	435766	436552	435766	ID=cds.MsaT047093.1;Parent=MsaT047093.1
Contig7	exon	436647	436828	436647	ID=MsaT047093.1.exon2;Parent=MsaT047093.1
Contig7	CDS	436647	436828	436647	ID=cds.MsaT047093.1;Parent=MsaT047093.1
Contig7	exon	437180	437971	437180	ID=MsaT047093.1.exon1;Parent=MsaT047093.1
Contig7	CDS	437180	437971	437180	ID=cds.MsaT047093.1;Parent=MsaT047093.1

Gene Sequence

>MsaT047093.1

ATGGACAATAGCTCTTGTTCGGAGAGTGATGTATGTTCCTCGGATGAAGATGTCGAAGACATTTACAGTTCGTTGTATGGGTGCAACTTTGACGATGAAACGGCGGTTGATTGCATGGCTGACCTTGACAGAATTAATTTTAAGGAAATAGGGTCGGATGAAATCATGCGGTACCATTTTCAGGATCGTTTAGTTGCATTCAAGTTTTACAATTTGTACGGTTTTGTATGTGGATTTTCTGGTAGAAAAAGCCGTGTTGTTAAGAACAGGGATGGCGATGTTGTTCAACAAACCTTTGTTTGTCATAGAGAAGGTTACAGGGTTGGAAGTAATGCTGCCGATAGGAAAAGAGAGCAGAAGGCAACTAGTAGGTGTGGTTGCATGGCAAAAATTCAAGTACACGTTGACGCTGGTAGTGGTCGATGGTACATAAAATCTGTTGACGATATTCACAATCACACCTTTTTGGATGGGAAGTATGAGGGAATGCTACCTGCACATAGGAAGATGAGCGATTATGACAAATACCAAATGAAAATGATGAGGAAAGCTGGCATTCCTACGTCACGCATCTACGGTTTTTTTGCTTCACAGGCTGGTGGATTTAAAAATCTTGGATATACAAGAAGAGACATGTACAACGAGCAATTCAAGAACAAGGAGTGGAAGAGTACAGATGCAGAGGATGCAATTGATTTCCTTAAGGGTTTGTGTAGTACGGATGATATGATGTTTTGGAGGCACACAGTTAAAGAGGATGGAACACTTCGACATTTATTTTGGTGTGATGGGTTCAAACGGTGTATGTTCGGTGATTTTGATATTGAAGAGTTTGAAACTATGTGGGATTTGTTGGTTGCAGAGTTTGGGTTGGAAAATAATAAGTGGATTCGTGAGCTGTATGAGAAGCGGGAGCAATGGTCAACTGCCCATATCCGTGGTAGATTTTATGCTGGTTTCAGAACAACCTCAAGATACAGAGAAATTGAGGCGGATTATGCATCTTCTTTCGGTGACCCCGTTTTGCAAACTCAACATAGAAAATTAGAGAAGTCAGCTTCAAGAATATATACAAGGGCAGTGTTTAAGCAGTTTAGGCCCGTATTGGAGAGATCTAGTCGGTGCAAAGTCGAAGGTGATGTGCGCAGTGGTTCCATTTTTACCTATAATGTTTTCAAATTCCCTAGGGATGATATTCATTGGATCGTGACATTTTGCCAAGAACGGTTAACATTTAAATGTTCATGCAAAAGATTCGAGACATTTGGTATTCCTTGTGAACATATCTTACATGTTCTAGTGCATTTGAACATTGTTGTACTGCCAGAATGTCTCGTGATGGAACGATGGACCAAACGTGCTAAAGATGGAATCAATGCTCAAAATGCTAATAGTTCAAGTCACCGTGATCCTGCATTTGTAACTACGTATGTGATGTTTGTGGAGCGATGTAAGAGGATGGCCAATGCCGTGTTGAAGTGTGGAGATCCTGAATATATACACAAAACCATGGAAATGATTGAAAAACACACCGAAACATTGGAATCATTAAGCAGGGGTGAAGTTGATGAATTGCCCGTGGTCGGTTCAGTGACAGAAAAAAGTTTAGGTAATCCGCAACGGCTTAAGAAAAGAGGTGGAGCAGCAGCTGCGTCTTCATCTCGTAATGTAAGTGGAAAGAAAAAGCGGAGTTCGCCGAAATGTGGCATATGTGGATGTAAGGGTCACAACCGGCAGTCCTGCTGCTCACGAAGACTTTAA

Protein sequence

>MsaT047093.1

MDNSSCSESDVCSSDEDVEDIYSSLYGCNFDDETAVDCMADLDRINFKEIGSDEIMRYHFQDRLVAFKFYNLYGFVCGFSGRKSRVVKNRDGDVVQQTFVCHREGYRVGSNAADRKREQKATSRCGCMAKIQVHVDAGSGRWYIKSVDDIHNHTFLDGKYEGMLPAHRKMSDYDKYQMKMMRKAGIPTSRIYGFFASQAGGFKNLGYTRRDMYNEQFKNKEWKSTDAEDAIDFLKGLCSTDDMMFWRHTVKEDGTLRHLFWCDGFKRCMFGDFDIEEFETMWDLLVAEFGLENNKWIRELYEKREQWSTAHIRGRFYAGFRTTSRYREIEADYASSFGDPVLQTQHRKLEKSASRIYTRAVFKQFRPVLERSSRCKVEGDVRSGSIFTYNVFKFPRDDIHWIVTFCQERLTFKCSCKRFETFGIPCEHILHVLVHLNIVVLPECLVMERWTKRAKDGINAQNANSSSHRDPAFVTTYVMFVERCKRMANAVLKCGDPEYIHKTMEMIEKHTETLESLSRGEVDELPVVGSVTEKSLGNPQRLKKRGGAAAASSSRNVSGKKKRSSPKCGICGCKGHNRQSCCSRRL*