AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG047135


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG047135 MtrunA17_Chr4g0057891 99.232 521 4 0 1 521 1 521 0.0 1079
MsaG047135 MtrunA17_Chr8g0357601 46.214 383 195 5 143 520 176 552 3.67e-104 323
MsaG047135 MtrunA17_Chr7g0224271 41.191 403 207 7 133 521 288 674 6.87e-95 302
MsaG047135 MtrunA17_Chr8g0376381 32.661 496 277 17 46 520 63 522 1.67e-71 237
MsaG047135 MtrunA17_Chr3g0110971 34.085 399 218 11 143 520 213 587 6.95e-66 224
MsaG047135 MtrunA17_Chr2g0319091 32.376 383 237 5 146 519 209 578 6.99e-63 215
MsaG047135 MtrunA17_Chr3g0125811 32.723 382 235 5 148 520 202 570 1.49e-61 211
MsaG047135 MtrunA17_Chr1g0159461 32.461 382 236 5 148 520 224 592 1.74e-61 212
MsaG047135 MtrunA17_Chr2g0306641 34.577 402 220 13 135 521 115 488 2.30e-61 209
MsaG047135 MtrunA17_Chr5g0447691 32.292 384 238 6 146 520 174 544 4.33e-60 207
MsaG047135 MtrunA17_Chr5g0445331 30.928 388 242 7 146 520 158 532 5.84e-58 201
MsaG047135 MtrunA17_Chr4g0031741 32.642 386 231 9 146 519 281 649 1.22e-57 202
MsaG047135 MtrunA17_Chr4g0057291 34.109 387 234 12 143 519 286 661 2.66e-56 199
MsaG047135 MtrunA17_Chr3g0101141 29.948 384 247 5 146 520 172 542 9.63e-56 195
MsaG047135 MtrunA17_Chr4g0031721 29.024 410 266 7 120 519 289 683 1.52e-55 197
MsaG047135 MtrunA17_Chr4g0038761 33.602 372 226 10 153 520 88 442 6.27e-53 186
MsaG047135 MtrunA17_Chr4g0031701 29.306 389 244 8 146 518 251 624 2.72e-52 187
MsaG047135 MtrunA17_Chr2g0328411 29.870 385 242 7 146 519 286 653 4.02e-52 188
MsaG047135 MtrunA17_Chr4g0031711 28.676 408 260 8 128 519 340 732 6.66e-52 188
MsaG047135 MtrunA17_Chr2g0290241 31.458 391 239 9 144 521 52 426 1.55e-51 181
MsaG047135 MtrunA17_Chr4g0076091 30.670 388 246 7 144 521 170 544 2.83e-51 183
MsaG047135 MtrunA17_Chr2g0328391 29.950 404 246 10 134 519 284 668 3.45e-51 185
MsaG047135 MtrunA17_Chr7g0238891 29.870 385 247 6 146 520 369 740 4.22e-51 186
MsaG047135 MtrunA17_Chr4g0031731 28.792 389 246 8 146 518 251 624 5.29e-51 184
MsaG047135 MtrunA17_Chr7g0245601 31.622 370 232 8 153 520 442 792 3.28e-50 184
MsaG047135 MtrunA17_Chr4g0038851 28.345 441 240 10 143 520 42 469 8.23e-50 177
MsaG047135 MtrunA17_Chr2g0328431 28.718 390 250 7 141 519 281 653 4.02e-48 176
MsaG047135 MtrunA17_Chr2g0328381 28.534 382 252 8 146 519 272 640 4.72e-46 171
MsaG047135 MtrunA17_Chr2g0328341 28.721 383 250 10 146 519 269 637 1.34e-45 169
MsaG047135 MtrunA17_Chr1g0200401 30.024 413 233 15 141 521 72 460 2.58e-45 165
MsaG047135 MtrunA17_Chr2g0294461 29.487 390 257 8 142 520 203 585 2.39e-44 165
MsaG047135 MtrunA17_Chr3g0114841 30.732 410 251 11 133 521 104 501 6.58e-44 162
MsaG047135 MtrunA17_Chr4g0039661 27.532 385 250 7 146 520 190 555 1.24e-42 159
MsaG047135 MtrunA17_Chr1g0183641 28.837 430 263 13 112 521 72 478 2.23e-42 157
MsaG047135 MtrunA17_Chr2g0328401 28.487 337 214 6 146 472 287 606 1.07e-41 158
MsaG047135 MtrunA17_Chr5g0424131 29.440 411 259 10 130 521 102 500 6.01e-41 154
MsaG047135 MtrunA17_Chr3g0085681 26.241 423 248 6 150 520 26 436 1.10e-40 152
MsaG047135 MtrunA17_Chr1g0194621 30.179 391 246 13 144 520 141 518 5.55e-40 151
MsaG047135 MtrunA17_Chr2g0294471 28.571 399 258 12 133 520 194 576 8.68e-40 152
MsaG047135 MtrunA17_Chr2g0328361 25.984 381 238 9 146 519 271 614 2.61e-37 145
MsaG047135 MtrunA17_Chr7g0270031 26.500 400 272 11 127 520 171 554 8.18e-36 140
MsaG047135 MtrunA17_Chr7g0236851 30.592 304 199 6 224 519 357 656 1.19e-34 138
MsaG047135 MtrunA17_Chr3g0085361 26.801 347 184 7 232 520 16 350 3.79e-34 132
MsaG047135 MtrunA17_Chr5g0396491 39.216 153 90 2 371 521 328 479 7.72e-34 134
MsaG047135 MtrunA17_Chr5g0396491 31.982 222 139 5 143 364 50 259 8.00e-22 98.6
MsaG047135 MtrunA17_Chr2g0328371 28.794 257 172 5 227 477 1 252 3.57e-33 126
MsaG047135 MtrunA17_Chr5g0401131 25.575 391 258 10 149 520 114 490 8.70e-33 130
MsaG047135 MtrunA17_Chr6g0468561 30.102 392 232 15 148 520 294 662 5.24e-31 127
MsaG047135 MtrunA17_Chr5g0401421 25.891 421 254 13 148 519 34 445 1.48e-26 112
MsaG047135 MtrunA17_Chr2g0329591 24.824 427 267 14 121 520 52 451 2.73e-26 111
MsaG047135 MtrunA17_Chr4g0053901 26.047 430 240 14 148 519 58 467 1.16e-25 109
MsaG047135 MtrunA17_Chr7g0230731 25.581 387 251 11 146 521 369 729 1.30e-22 102
MsaG047135 MtrunA17_Chr7g0230771 25.389 386 253 11 146 521 372 732 1.35e-22 102
MsaG047135 MtrunA17_Chr8g0383981 27.366 391 236 16 146 519 136 495 8.21e-22 98.6
MsaG047135 MtrunA17_Chr4g0012071 24.685 397 261 12 136 521 183 552 4.31e-21 96.7
MsaG047135 MtrunA17_Chr8g0344101 24.146 410 255 13 142 520 216 600 1.26e-19 92.4
MsaG047135 MtrunA17_Chr2g0323111 28.652 178 118 4 348 519 131 305 1.48e-15 77.8
MsaG047135 MtrunA17_Chr8g0373561 25.000 304 198 11 231 521 256 542 3.84e-15 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG047135 AT1G66350.1 36.554 383 215 10 143 521 149 507 1.62e-73 242
MsaG047135 AT1G14920.1 36.132 393 215 11 139 520 162 529 1.35e-69 232
MsaG047135 AT3G03450.1 35.294 391 218 12 143 520 177 545 4.21e-69 231
MsaG047135 AT5G17490.1 35.990 389 212 13 143 520 154 516 9.60e-69 230
MsaG047135 AT2G01570.1 34.359 390 220 11 142 520 217 581 4.96e-66 224
MsaG047135 AT5G48150.1 33.684 380 231 6 150 520 123 490 2.11e-63 215
MsaG047135 AT5G48150.4 33.684 380 231 6 150 520 123 490 2.11e-63 215
MsaG047135 AT5G48150.2 33.684 380 231 6 150 520 123 490 2.11e-63 215
MsaG047135 AT5G48150.3 33.684 380 231 6 150 520 123 490 2.11e-63 215
MsaG047135 AT1G21450.1 32.637 383 235 6 148 520 224 593 1.44e-60 210
MsaG047135 AT2G04890.1 31.733 375 239 5 149 520 53 413 1.08e-58 200
MsaG047135 AT2G29065.1 31.877 389 234 10 149 519 252 627 5.72e-56 198
MsaG047135 AT1G50600.3 32.031 384 239 6 146 520 156 526 6.53e-56 196
MsaG047135 AT1G50600.1 32.031 384 239 6 146 520 227 597 1.98e-55 196
MsaG047135 AT1G50600.2 32.031 384 239 6 146 520 231 601 2.37e-55 196
MsaG047135 AT3G54220.1 34.054 370 224 9 153 519 297 649 3.78e-54 193
MsaG047135 AT1G07520.2 30.695 417 254 11 124 519 126 528 1.28e-53 189
MsaG047135 AT1G07520.4 30.695 417 254 11 124 519 126 528 1.28e-53 189
MsaG047135 AT3G46600.2 30.729 384 238 8 149 520 4 371 6.84e-53 184
MsaG047135 AT1G07520.1 30.695 417 254 11 124 519 290 692 9.09e-53 190
MsaG047135 AT1G07520.3 30.695 417 254 11 124 519 291 693 1.01e-52 190
MsaG047135 AT1G50420.1 30.206 437 240 11 143 521 51 480 1.33e-52 186
MsaG047135 AT5G41920.1 32.564 390 241 10 135 521 31 401 2.37e-52 183
MsaG047135 AT5G59450.1 30.670 388 243 8 146 520 224 598 4.10e-52 187
MsaG047135 AT3G46600.1 30.729 384 238 8 149 520 212 579 2.23e-51 184
MsaG047135 AT3G46600.3 30.729 384 238 8 149 520 180 547 2.52e-51 184
MsaG047135 AT4G17230.1 31.606 386 242 6 144 520 153 525 1.69e-50 181
MsaG047135 AT4G17230.2 31.606 386 242 6 144 520 153 525 1.69e-50 181
MsaG047135 AT1G07530.1 28.385 384 253 5 146 519 393 764 1.84e-50 185
MsaG047135 AT2G37650.2 29.457 387 244 8 146 520 332 701 5.99e-49 180
MsaG047135 AT2G37650.1 29.457 387 244 8 146 520 344 713 8.13e-49 179
MsaG047135 AT2G29060.2 29.208 404 252 10 133 519 268 654 4.74e-48 177
MsaG047135 AT2G29060.1 29.208 404 252 10 133 519 305 691 6.11e-48 177
MsaG047135 AT1G55580.1 34.680 297 176 6 238 520 153 445 1.14e-44 163
MsaG047135 AT5G66770.1 27.792 385 251 7 146 520 217 584 5.43e-44 164
MsaG047135 AT1G63100.1 29.592 392 246 8 146 519 249 628 5.79e-44 165
MsaG047135 AT1G63100.2 29.592 392 246 8 146 519 274 653 6.22e-44 165
MsaG047135 AT3G50650.1 29.412 357 216 7 180 520 206 542 1.36e-41 157
MsaG047135 AT5G52510.1 29.808 312 191 8 232 520 334 640 8.14e-35 139
MsaG047135 AT4G08250.1 27.990 393 250 12 143 519 101 476 7.06e-34 134
MsaG047135 AT4G37650.1 26.551 403 246 14 149 520 146 529 1.18e-31 128
MsaG047135 AT3G49950.1 26.173 405 256 9 140 519 21 407 3.26e-28 117
MsaG047135 AT2G45160.1 26.593 361 213 14 181 521 312 640 3.89e-25 109
MsaG047135 AT3G60630.1 27.796 313 187 13 230 521 329 623 8.38e-24 105
MsaG047135 AT4G00150.1 25.140 358 222 12 188 521 220 555 5.46e-22 99.8
MsaG047135 AT4G36710.1 25.604 414 255 17 126 520 106 485 6.15e-18 87.0
MsaG047135 AT3G13840.1 24.818 411 253 15 133 520 133 510 1.22e-13 73.9

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig8 gene 225797 227362 225797 ID=MsaG047135
Contig8 mRNA 225797 227362 225797 ID=MsaT047135.1;Parent=MsaG047135
Contig8 exon 225797 227362 225797 ID=MsaT047135.1.exon1;Parent=MsaT047135.1
Contig8 CDS 225797 227362 225797 ID=cds.MsaT047135.1;Parent=MsaT047135.1
Gene Sequence

>MsaT047135.1

ATGTCACCTGCACTTTATGCTAGTACCTTCAAATGTGAGGTAGATGAAAATCCATCATTAATGGGTTCTTACTATGCTTCTTTATATCCAAATTTGCCTATTTTAGAAAACAGTGCTAGTTCAACATGGATCCTTAATCCATTTTCTGATCATGAAACTGAAACCACTAGGGATCACAAGAAATTGAAAAGATCAACCGTAACTATCCCTATTTGGTTTGCGAATTTCAGCAGCCATAGTAATAGTTTCTTCAATAACATCAACAGCAATAACAACAGTGTGAATAGCATTCCAAGGCTTCATTTCAGAGATCACATAAGAACTTATAAGCAAAGATATTTTGCTGCTGAAGCTGTTGAAGAAGCAGCAGAAGATAACTTCAACTGCAATAATTGCGAAGCTGAAGAAGATGGTTCATGTGCTGATGGAATGAGACTAGTTCAACTTCTAATTGCATGTGCTGAAGCTGTCGCGTGTCGCGACAAATCACACGCTTCGGTTTTATTATCCGAGCTTAAATCAAATGCTTTGGTGTTTGGTTCTTCATTCCAAAGAGTTGCTTCTTGTTTTGTTCAAGGACTCACAGAGAGACTAACTCTGATTCAACCAATTGGTAATAATTCTGCTGGATCAGATACAAAATCAATGATGAACATAATGGATGCTGCATCAGAAGAAATGGAAGAAGCATTCAAGTTGGTTTATGAAAATTGTCCACATATTCAATTTGGACATTTTGTGGCTAATTCCATAATATTGGAAGCCTTTGAGGGTGAGAGTTTTCTTCACGTGGTTGATCTTGGCATGAGCCTTGGTCTTCCACATGGACACCAATGGCGAGGACTAATTCAAAGTCTCGCGGATCGATCCAGCCACCGTGTTCGGCGGCTTAGGATCACAGCGATTGGTCTATGCATTGCTAGAATCCAAGTCATTGGTGAAGAACTCTCAATTTACGCGAAAAATTTGGGGATTCATTTGGAATTCTCAATTGTTGAGAAGAATTTGGAGAATTTGAAACCTAAGGACATAAAAGTGAATGAAAAAGAGGTCCTTGTGGTTAACAGCATTCTTCAATTGCATTGTGTTGTTAAAGAGAGTCGTGGCGCTTTGAATGCGGTTTTACAAATGATCCACGGTCTTTCGCCAAAAGTGTTGGTTATGGCTGAGCAAGATTCTGGTCACAATGGACCATTTTTCCTTGGAAGGTTTATGGAATCATTGCATTATTATTCTGCTATTTTTGACTCATTGGATGCTATGCTGCCAAAGTATGACACTAAGAGGGCAAAAATGGAACAGTTTTATTTTGCCGAGGAGATAAAGAACATTGTGAGCTGTGAAGGACCATTGAGGATGGAGAGGCATGAGAAAGTTGATCAGTGGAGGAGGAGAATGAGTAGGGCTGGATTTCAAGGTTCACCTATTAAGATGGTTGTTCAAGCTAAGCAGTGGCTTGTGAAGAATAATGTTTGTGATGGATATACTGTTGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCAAAGCCTATTGTTGCAGTTTCTTGCTGGAAATGCTGA

Protein sequence

>MsaT047135.1

MSPALYASTFKCEVDENPSLMGSYYASLYPNLPILENSASSTWILNPFSDHETETTRDHKKLKRSTVTIPIWFANFSSHSNSFFNNINSNNNSVNSIPRLHFRDHIRTYKQRYFAAEAVEEAAEDNFNCNNCEAEEDGSCADGMRLVQLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLTERLTLIQPIGNNSAGSDTKSMMNIMDAASEEMEEAFKLVYENCPHIQFGHFVANSIILEAFEGESFLHVVDLGMSLGLPHGHQWRGLIQSLADRSSHRVRRLRITAIGLCIARIQVIGEELSIYAKNLGIHLEFSIVEKNLENLKPKDIKVNEKEVLVVNSILQLHCVVKESRGALNAVLQMIHGLSPKVLVMAEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGSPIKMVVQAKQWLVKNNVCDGYTVVEEKGCLVLGWKSKPIVAVSCWKC*